g.barbadense_cottongen_reftransV1_0097272, g.barbadense_cottongen_reftransV1_0097272 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_CANAL (COP9 signalosome complex subunit 5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RRI1 PE=3 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 2.544e-59 Identity = 93/162 (57.41%), Postives = 117/162 (72.22%), Query Frame = -2 Query: 1013 FYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQ---AGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 1489 FY A + +KPW D +YF + IS+LAL+KM HA++GG+IE+MG++ GK G +IIVMD + LPVEGTETRVNAQ +AY YMV+Y +Q EN+VGWYH HP YGCWL GIDVSTQ LNQ Q+P+LA+V+DP +T+ GKVEIGAFR Sbjct: 49 FYRLPAMDPIARDKKPWKQDVNYFNKCYISSLALMKMCTHAQTGGSIEIMGMLVGKISGHSIIVMDTYRLPVEGTETRVNAQNEAYTYMVEYLTERQQLSNGKNEENIVGWYHRHPRYGCWLKGIDVSTQSLNQGLQDPYLAIVVDPVKTLKQGKVEIGAFR 210
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RRI1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.324e-55 Identity = 94/196 (47.96%), Postives = 133/196 (67.86%), Query Frame = -2 Query: 884 AQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFK 1471 +Q + QQE W DP YF++ +SALA +K++ HA GG +EV+G++ G + I+V+D++ LPVEGTETRVNAQ ++YEY V Y +T G +VGWYHSHPGYGCWLSGID TQ LNQ FQ+P+LA+V+DP R+ ++G ++IGAFRT PE +S + + +G H +YY L+++YF+ Sbjct: 54 SQVRVQQEL-WKQDPTYFQKAALSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPEGLA--IVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPETAD--TRSVSSH-----SNASRYGHHSARYYELEVSYFE 239
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RRI1 PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 6.576e-49 Identity = 90/201 (44.78%), Postives = 125/201 (62.19%), Query Frame = -2 Query: 854 PWAND----PHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDL 1444 P+A D P +F++ IS LA KM+ HA GG IEVMG++ G T D I+V D ++LPV+GTETRVNA ++YEYMV Y + + + +VGWYHSHPGYGCWLS ID+ TQ LNQ +Q+P+LA+V+DP +++S ++IGAFRT P +D H YY L+I +++SLD ++ L Sbjct: 51 PYATDLKRNPCHFQKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQY--LDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTLPS--------------------KDNNEHV-DYYPLNIQLYQNSLDVNISKL 228
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RRI1 PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.886e-44 Identity = 82/176 (46.59%), Postives = 112/176 (63.64%), Query Frame = -2 Query: 935 NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY--SQTNKQAGRLE---NVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTI----PLNKIED 1435 N P +++ V +S LA K++ HA GG IEVMG++ G G+ ++ D F LPVEGTET VNA ++YEYMV + + R E N++GWYHSHPGY CWLS ID+ TQ LNQQ Q+P+LA+V+DP ++ + KV IG+FRTY + + D E T LNK+E+ Sbjct: 66 NSPLFYQNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQD--QNDDTNFYELNTTVFDSELNKLEN 239
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 3.718e-40 Identity = 85/206 (41.26%), Postives = 116/206 (56.31%), Query Frame = -2 Query: 833 FKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY-----SQTNKQAGR-----LENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWV 1420 + V IS L+ K+ +A GG IE+MG++ G T D I+VMD F LPV GTETRVNAQ ++YEYMV Y + + GR NVVGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++ + +GAFRT K D+ + YY L+ F S L+ L + N + V Sbjct: 68 YTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIES--KSDDNSAT------------------SYYELETIIFDSELNRALFETKLNLHCV 253
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: K4D6N3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=LOC543616 PE=4 SV=1) HSP 1 Score: 653.67 bits (1685), Expect = 0.000e+0 Identity = 311/357 (87.11%), Postives = 335/357 (93.84%), Query Frame = -2 Query: 521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570 +A+AQ+TWELENNI+T + P + +SD+IF+YD+AAQ KFQ+EKPW +DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDV+TQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL+HSR G L P++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV +S +SQ + S PEPM+ET Sbjct: 11 AAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET 367
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: B9N696_POPTR (COP9 complex family protein OS=Populus trichocarpa GN=POPTR_0006s29000g PE=4 SV=1) HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0 Identity = 314/360 (87.22%), Postives = 336/360 (93.33%), Query Frame = -2 Query: 521 SAIAQKTWELENNILTVETPDPSSDSI----------FYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPLGPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570 S+IA+KTWELENNI+ ++T P++ FY+DEAAQAKFQ+EKPW+NDP+YF+RVKISALALLKMVVHARSGGTIEVMGLMQGKTDGD+IIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENV+GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDP+SEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLE AENQLAHSR+GPL P++K EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV QS+RSQ + SGPEPM+ET Sbjct: 7 SSIAKKTWELENNIIPIDTATPTTTDTSSSSSSSDAIFYFDEAAQAKFQKEKPWSNDPNYFRRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEHAENQLAHSRLGPLMTPQRKKDEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQSNRSQTEPSGPEPMVET 366
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: W9S9C6_9ROSA (COP9 signalosome complex subunit 5b OS=Morus notabilis GN=L484_002292 PE=4 SV=1) HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0 Identity = 325/361 (90.03%), Postives = 339/361 (93.91%), Query Frame = -2 Query: 521 SAIAQKTWELENNILTVETPDP----------SSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570 S IAQ+TWELENNI+ +ETP P SSD++FYYDEAAQAKFQQEKPW+NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPD+P+SEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLD HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSR GPL PP++K EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS+RS + SGP+PMIE+ Sbjct: 8 SQIAQQTWELENNIIPMETPTPPATAKSSGGDSSDAVFYYDEAAQAKFQQEKPWSNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPPQRKKDEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSNRSHAEPSGPDPMIES 368
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: D6CIB3_SOLLC (CSN5 protein OS=Solanum lycopersicum GN=csn5 PE=2 SV=1) HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0 Identity = 309/357 (86.55%), Postives = 333/357 (93.28%), Query Frame = -2 Query: 521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570 +A+AQ+TWELENNI+T + P + +SD+IF+YD+AAQ KFQ+EKPW +DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDV+TQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQ EN L+HSR G L P++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV +S +SQ + S PEPM+ET Sbjct: 11 AAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQGENHLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET 367
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: Q9FR56_SOLLC (JAB OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 647.506 bits (1669), Expect = 0.000e+0 Identity = 308/357 (86.27%), Postives = 333/357 (93.28%), Query Frame = -2 Query: 521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570 +A+AQ+TWELENNI+T + P + +SD+IF+YD+AAQ KFQ+EKPW +DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDV+TQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLL NGDYVAGQISDLAEK+EQAEN L+HSR G L P++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV +S +SQ + S PEPM+ET Sbjct: 11 AAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLENGDYVAGQISDLAEKMEQAENHLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET 367 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
Pages
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097272 ID=g.barbadense_cottongen_reftransV1_0097272; Name=g.barbadense_cottongen_reftransV1_0097272; organism=Gossypium barbadense; type=contig; length=1847bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|