g.barbadense_cottongen_reftransV1_0097272, g.barbadense_cottongen_reftransV1_0097272 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097272
Unique Nameg.barbadense_cottongen_reftransV1_0097272
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1847
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At05chromosomeg.barbadense_cottongen_reftransV1_0097272:1..1832 .
At05:3897802..3900469 +		n/a
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_CANAL (COP9 signalosome complex subunit 5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.544e-59
Identity = 93/162 (57.41%), Postives = 117/162 (72.22%), Query Frame = -2 
Query: 1013 FYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQ---AGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFR 1489
            FY   A     + +KPW  D +YF +  IS+LAL+KM  HA++GG+IE+MG++ GK  G +IIVMD + LPVEGTETRVNAQ +AY YMV+Y    +Q       EN+VGWYH HP YGCWL GIDVSTQ LNQ  Q+P+LA+V+DP +T+  GKVEIGAFR
Sbjct:   49 FYRLPAMDPIARDKKPWKQDVNYFNKCYISSLALMKMCTHAQTGGSIEIMGMLVGKISGHSIIVMDTYRLPVEGTETRVNAQNEAYTYMVEYLTERQQLSNGKNEENIVGWYHRHPRYGCWLKGIDVSTQSLNQGLQDPYLAIVVDPVKTLKQGKVEIGAFR 210
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.324e-55
Identity = 94/196 (47.96%), Postives = 133/196 (67.86%), Query Frame = -2 
Query:  884 AQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFK 1471
            +Q + QQE  W  DP YF++  +SALA +K++ HA  GG +EV+G++ G    + I+V+D++ LPVEGTETRVNAQ ++YEY V Y +T    G    +VGWYHSHPGYGCWLSGID  TQ LNQ FQ+P+LA+V+DP R+ ++G ++IGAFRT PE        +S +     +    +G H  +YY L+++YF+
Sbjct:   54 SQVRVQQEL-WKQDPTYFQKAALSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPEGLA--IVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPETAD--TRSVSSH-----SNASRYGHHSARYYELEVSYFE 239
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.576e-49
Identity = 90/201 (44.78%), Postives = 125/201 (62.19%), Query Frame = -2 
Query:  854 PWAND----PHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDL 1444
            P+A D    P +F++  IS LA  KM+ HA  GG IEVMG++ G T  D I+V D ++LPV+GTETRVNA  ++YEYMV Y   +    + + +VGWYHSHPGYGCWLS ID+ TQ LNQ +Q+P+LA+V+DP +++S   ++IGAFRT P                     +D   H   YY L+I  +++SLD ++  L
Sbjct:   51 PYATDLKRNPCHFQKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQY--LDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTLPS--------------------KDNNEHV-DYYPLNIQLYQNSLDVNISKL 228
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.886e-44
Identity = 82/176 (46.59%), Postives = 112/176 (63.64%), Query Frame = -2 
Query:  935 NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY--SQTNKQAGRLE---NVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTI----PLNKIED 1435
            N P +++ V +S LA  K++ HA  GG IEVMG++ G   G+  ++ D F LPVEGTET VNA  ++YEYMV +      +   R E   N++GWYHSHPGY CWLS ID+ TQ LNQQ Q+P+LA+V+DP ++ +  KV IG+FRTY +  +  D    E  T      LNK+E+
Sbjct:   66 NSPLFYQNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQD--QNDDTNFYELNTTVFDSELNKLEN 239
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 3.718e-40
Identity = 85/206 (41.26%), Postives = 116/206 (56.31%), Query Frame = -2 
Query:  833 FKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY-----SQTNKQAGR-----LENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWV 1420
            +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y     +  +   GR       NVVGW+HSHPGY CWLS ID+ TQ LNQ+FQ+P++A+V+DP +++    + +GAFRT     K  D+  +                   YY L+   F S L+  L +   N + V
Sbjct:   68 YTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRTIES--KSDDNSAT------------------SYYELETIIFDSELNRALFETKLNLHCV 253
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: B9ILG7_POPTR (COP9 complex family protein OS=Populus trichocarpa GN=POPTR_0018s03690g PE=4 SV=1)

HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 319/358 (89.11%), Postives = 339/358 (94.69%), Query Frame = -2 
Query:  521 SAIAQKTWELENNILTVETPDPS--------SDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPLGPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            S+IAQKTWELENNI T++T  P+        SD+IF+YD+AAQAKF QEKPW+NDP+YF+RV+ISALALLKMVVHARSGGTIEVMGLMQGKTDGD+IIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDP+SEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLE AENQLAHSR+GPL  P++K  EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS+RS+ + SGPEPM+ET
Sbjct:    9 SSIAQKTWELENNIKTIDTSTPTIATGTSFLSDAIFHYDDAAQAKFLQEKPWSNDPNYFRRVRISALALLKMVVHARSGGTIEVMGLMQGKTDGDSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEHAENQLAHSRLGPLMAPQRKKDEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSNRSRAETSGPEPMVET 366
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: V4WAN0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008736mg PE=4 SV=1)

HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0
Identity = 322/361 (89.20%), Postives = 338/361 (93.63%), Query Frame = -2 
Query:  521 MDSAIAQKTWELENNILTVETP-------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL--GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1576
            MDS+IAQKTWELENNI+++ETP         +SD+IF+YDE AQ KFQQEKPW NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLEN VGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPD+PISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL+HSR GPL   PPR+K QE+SQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS+++    S PEPMIE+
Sbjct:    1 MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEQEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAGPSDPEPMIES 361
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: A0A0A0LPC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G378560 PE=4 SV=1)

HSP 1 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 321/358 (89.66%), Postives = 338/358 (94.41%), Query Frame = -2 
Query:  521 SAIAQKTWELENNILTVETP-------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            S IAQKTWELENNI++V+TP       D +SD+IFYYDEAAQAKFQQEKPW NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPD+P+SEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQ ENQLAHSR GPL  P ++K +E+SQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQ ++S+ + S PEPM+E+
Sbjct:    8 SQIAQKTWELENNIISVDTPPTTSKASDSASDAIFYYDEAAQAKFQQEKPWQNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQVENQLAHSRFGPLIAPSQRKKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQPNKSRPESSSPEPMVES 365
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: A0A067FMD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018085mg PE=4 SV=1)

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 319/360 (88.61%), Postives = 338/360 (93.89%), Query Frame = -2 
Query:  521 MDSAIAQKTWELENNILTVETP-------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1576
            MDS+IAQKTWELENNI+++ETP         +SD+IF+YDE AQ KFQQEKPW NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLEN VGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPD+PISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL+HSR GPL  PP ++ +E+SQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS+++  + S PEPMIE+
Sbjct:    1 MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAEPSDPEPMIES 360
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: M5XNA2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007500mg PE=4 SV=1)

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 322/366 (87.98%), Postives = 341/366 (93.17%), Query Frame = -2 
Query:  521 MDSAIAQKTWELENNILTVETP--------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSR-----SQNDQSGPEPMIET 1576
            MD+ IAQ+TWELENNI+ ++TP        DPS+D+IFYYDEAAQAKFQQEKPW NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKV+IGAFRTYPEGYKPPDDP+SEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAEN L+HSR GPL  PP++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS++     S  + S PEPM+E+
Sbjct:    1 MDAQIAQQTWELENNIIPMDTPPSVAKSKADPSADAIFYYDEAAQAKFQQEKPWTNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVDIGAFRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENHLSHSRFGPLITPPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSNKSLTQPSLTEPSDPEPMVES 366
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: V4UGT0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008736mg PE=4 SV=1)

HSP 1 Score: 667.537 bits (1721), Expect = 0.000e+0
Identity = 319/360 (88.61%), Postives = 337/360 (93.61%), Query Frame = -2 
Query:  521 MDSAIAQKTWELENNILTVETP-------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1576
            MDS+IAQKTWELENNI+++ETP         +SD+IF+YDE AQ KFQQEKPW NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLEN VGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPD+PISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL+HSR GPL  PP ++ +E+SQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS+++    S PEPMIE+
Sbjct:    1 MDSSIAQKTWELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAGPSDPEPMIES 360
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: A0A0D2TKS6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G068200 PE=4 SV=1)

HSP 1 Score: 666.381 bits (1718), Expect = 0.000e+0
Identity = 324/352 (92.05%), Postives = 324/352 (92.05%), Query Frame = -2 
Query:  521 MDSAIAQKTWELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPLGPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1576
            MDSAIAQKTWELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPLGPPRKK                            VIKDILFNSVRQSSRSQNDQSGPEPMIET
Sbjct:    1 MDSAIAQKTWELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPLGPPRKK----------------------------VIKDILFNSVRQSSRSQNDQSGPEPMIET 324
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: M1AJ46_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009240 PE=4 SV=1)

HSP 1 Score: 658.292 bits (1697), Expect = 0.000e+0
Identity = 314/357 (87.96%), Postives = 336/357 (94.12%), Query Frame = -2 
Query:  521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            +A+AQ+TWELENNI+T++ P      + +SD+IF+YD+AAQ KFQ+EKPW +DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LD+TYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL HSR GPL   P++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV QS +SQ + S PEPMIET
Sbjct:   11 AAMAQQTWELENNIVTMDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDVTYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLPHSRFGPLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCQSGKSQTEPSDPEPMIET 367
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: M1CK31_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026918 PE=4 SV=1)

HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 313/357 (87.68%), Postives = 338/357 (94.68%), Query Frame = -2 
Query:  521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            +A+AQ+TWELENNI+T++ P      + +SD+IF+YD+AAQ KFQ+EKPWA+DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLE AENQL++SR   L  PP++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV +SS+SQ + SGPEPMIE+
Sbjct:   11 AAMAQQTWELENNIVTIDAPSGSTPENSASDAIFHYDDAAQTKFQREKPWASDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEHAENQLSNSRYASLMAPPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVGKSSKSQTEPSGPEPMIES 367
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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: K4C935_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g073150.2 PE=4 SV=1)

HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 312/357 (87.39%), Postives = 337/357 (94.40%), Query Frame = -2 
Query:  521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            +A+AQ+TWELENNI+T++ P      + +SD+IF+YD+AAQ KFQ+EKPWA+DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDC LLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLE AENQL++SR   L  PP++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV +SS+SQ + SGPEPMIE+
Sbjct:   11 AAMAQQTWELENNIVTIDAPSGSKPENSASDAIFHYDDAAQTKFQREKPWASDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCRLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEHAENQLSNSRYASLMAPPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVGKSSKSQTESSGPEPMIES 367
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
CSN5_CANAL2.544e-5957.41COP9 signalosome complex subunit 5 OS=Candida albi... [more]
CSN5_ASHGO2.324e-5547.96COP9 signalosome complex subunit 5 OS=Ashbya gossy... [more]
CSN5_KLULA6.576e-4944.78COP9 signalosome complex subunit 5 OS=Kluyveromyce... [more]
CSN5_CANGA2.886e-4446.59COP9 signalosome complex subunit 5 OS=Candida glab... [more]
CSN5_YEAS13.718e-4041.26COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9ILG7_POPTR0.000e+089.11COP9 complex family protein OS=Populus trichocarpa... [more]
V4WAN0_9ROSI0.000e+089.20Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0A0LPC3_CUCSA0.000e+089.66Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A067FMD4_CITSI0.000e+088.61Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
M5XNA2_PRUPE0.000e+087.98Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V4UGT0_9ROSI0.000e+088.61Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0D2TKS6_GOSRA0.000e+092.05Uncharacterized protein OS=Gossypium raimondii GN=... [more]
M1AJ46_SOLTU0.000e+087.96Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
M1CK31_SOLTU0.000e+087.68Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4C935_SOLLC0.000e+087.39Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 267..287
NoneNo IPR availableGENE3D3.40.140.10coord: 55..187
e-value: 5.9E-9
score: 35.2
NoneNo IPR availablePANTHERPTHR10410EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATEDcoord: 7..352
NoneNo IPR availablePANTHERPTHR10410:SF6COP9 SIGNALOSOME COMPLEX SUBUNIT 5coord: 7..352
NoneNo IPR availableSUPERFAMILY102712JAB1/MPN domaincoord: 55..192
IPR000555JAB1/MPN/MOV34 metalloenzyme domainSMARTSM00232pad1_6coord: 55..192
e-value: 4.6E-47
score: 172.3
IPR000555JAB1/MPN/MOV34 metalloenzyme domainPFAMPF01398JABcoord: 53..164
e-value: 2.4E-34
score: 117.7

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097272 ID=g.barbadense_cottongen_reftransV1_0097272; Name=g.barbadense_cottongen_reftransV1_0097272; organism=Gossypium barbadense; type=contig; length=1847bp
GGAGAAAGATATAACTGCAAACTTGGGTTGGGCCCAACTCAACAATAGTT
TAGTAATATGTTGTAGACTTCAGTTGTTGATTATACGACACAAAGGCCTA
GTTCACCTGAGTCCAATGGACATTTTTTTTCCTTTTGGTGTTCTTCATTT
CACTGCAAGTATTCTCAACTAGTACCCCTTCTAATTTTGTAAAACTGCCA
GACAGGAATCAAATTAAGGAAATTTTATCACTCCACTCCATAACCAGCTT
ACATAGGAAAATTGAAATTAACAATTTTAAAATACTGTGATTTGATTCCA
TGCAAATATTTCTTCAACAACAATGCATAAACTAAGAATTATGCAAAAAG
CTTAGTTCAAAACAAATTAAGACCCCTTCCCAACAGGATAGGCTTACATC
AGTAGTGCAAGGAAGGGTACAAAACTATCCAGCCTGGAATCCAATATATA
TTTCCTTCTTGTAAAAAACTGGTCTCTCACGCTCAAGGTAACCATTTCAT
CTGGCAGGATGTTAGAATTAGGTTTCAATCATAGGCTCAGGACCAGACTG
ATCGTTCTGGGACCTACTCGACTGTCGTACAGAGTTGAAAAGAATGTCTT
TGATGACCTGTGACATTAAACCATGGACTTGCTCCACAGTTATCTTTGCA
CTATCTCTAGTAATCTTAGCAAGCTGAGATTCTTCCTGCAACTTCTTTCG
AGGGGGTCCTAGTGGGCCAATGCGAGAGTGAGCCAATTGGTTCTCTGCTT
GCTCCAGCTTTTCAGCTAAATCTGAAATTTGTCCTGCAACATAATCTCCA
TTACCCAAGAGAGGTGAAGAAGAAAGGGTGTTTACCCAGTACTTATTCCA
TAACAGATCCAGGAGGTGACAATCAAGTGAGGATTTGAAATAAGTGATGT
CCAATGCATAATACTGTTTACAATGCACACCAAAGTCTTCAATCTTATTC
AGAGGAATGGTCTGATATTCAGAGATAGGGTCATCAGGAGGCTTATATCC
TTCAGGGTATGTCCTGAAAGCTCCAATCTCAACTTTTCCAGCGGAAACAG
TCCTTGTTGGGTCAATTACAACCGCCAGGAAGGGCTCCTGGAACTGCTGG
TTAAGCATTTGGGTTGAAACATCAATACCGGACAGCCAGCATCCATACCC
GGGATGTGAATGGTACCATCCAACAACATTTTCCAATCGCCCAGCCTGCT
TGTTGGTCTGGGAATAATCGACCATATACTCATAGGCATCCGCCTGAGCG
TTAACCCTAGTCTCAGTGCCTTCAACAGGCAAAGCAAAGGCGTCCATGAC
AATGATAGCATCGCCGTCAGTCTTGCCTTGCATCAGCCCCATCACCTCTA
TGGTACCACCAGATCGGGCGTGGACAACCATCTTAAGAAGAGCGAGCGCA
GAGATCTTAACGCGCTTGAAGTAGTGAGGATCATTGGCCCAAGGCTTCTC
TTGCTGGAACTTGGCTTGAGCCGCCTCGTCGTAGTAGAATATAGAATCCG
ATGAAGGGTCAGGTGTCTCGACGGTAAGTATATTGTTTTCTAATTCCCAT
GTTTTCTGAGCTATGGCAGAATCCATTCTTGTTCTTCAAATTCTCTCTAA
CTGAAGCACCCCAGGCCTAGGTTTTAATTTTATAGATATCAATTATCAAG
CACCGAGAGGAGAAGAGTGGGGAGAGAGGGATGGATTGAAAAAACCATCG
CCATTCGCCACCCTCCCCTAGGATTGAGGCCCATTACGACACTGTTCGGC
AGTTATTGGGCTTGGCCTTTAATTCTGGCTCCACAATACTGGTTTGGTGG
CTCACTGATTATATAATTTCCTTTTAATTATCATGCATGACATAGCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding