g.barbadense_cottongen_reftransV1_0097272, g.barbadense_cottongen_reftransV1_0097272 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097272
Unique Nameg.barbadense_cottongen_reftransV1_0097272
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1847
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At05chromosomeg.barbadense_cottongen_reftransV1_0097272:1..1832 .
At05:3897802..3900469 +
n/a
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_ASPFU (COP9 signalosome complex subunit 5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=csn5 PE=3 SV=2)

HSP 1 Score: 374.015 bits (959), Expect = 7.942e-123
Identity = 182/338 (53.85%), Postives = 238/338 (70.41%), Query Frame = -2
Query:  560 AQKTWELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDD--PISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL--AHSRIGPLGPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRS 1561
            AQ++WELEN I  +   DP  D+++ YDE         +PWA DPHYFK ++ISA+AL+KM +HARSGG++EVMGLMQG    +  +V DAF LPVEGTETRVNAQ +A EYMV Y Q+ + AGR+EN VGWYHSHPGYGCWLSGIDV+TQ + QQ   PF+AVVIDP RT+SAGKV+IGAFRT+P+ Y PP +     +YQTIPL+K EDFG +  QYY+L++++FKSSLD  LL  LWNKYWV TLS SPL    DY + Q+ DL++K+ +A   +  + SR G   P      ++ QL KI RD  +I  E+V GL++  +K  LF  + + +++
Sbjct:    4 AQQSWELENTISLI---DPQRDALYRYDEETHKALSAARPWAKDPHYFKSIRISAVALIKMTMHARSGGSLEVMGLMQGYILPETFVVTDAFRLPVEGTETRVNAQEEANEYMVSYLQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTTQDM-QQLGGPFVAVVIDPERTISAGKVDIGAFRTFPKDYTPPKEGNEDEDYQTIPLSKAEDFGAYAHQYYSLEVSFFKSSLDTELLSQLWNKYWVATLSQSPLFTTRDYGSRQMMDLSQKVRRAARGIESSGSRGGATTP------KDQQLEKIVRDGQRIVSEEVKGLLAAEVKMKLFQGIGEGTQT 331          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_USTMA (COP9 signalosome complex subunit 5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 375.17 bits (962), Expect = 3.105e-122
Identity = 197/391 (50.38%), Postives = 252/391 (64.45%), Query Frame = -2
Query:  530 WELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTD--GDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYK---PPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL-----------------AHSRIG--------------------PLGPPR------KKLQEESQLAKITR---DSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPM 1549
            +EL N I+ + +   + DSIF YD  AQ      +PW  DPH+F++V+ISA+AL+KMV+HARSGG  E+MGLMQGK D     + VMD+FALPVEGTETRVNAQ +AYEYMV Y   +K+ GRLENVVGWYHSHPGYGCWLSGIDV+TQ  NQQFQ+PF+A+VIDP RT+S+GKV+IGAFRT+PEGY          SEYQ+IPL+KIEDFGVH  +YY L++ +FKSSLD  LLDLLWNKYW NTLS SPL+ N  Y   QI DLA+KL Q    +                 A  RIG                    P G  +      K+ ++ S+++ I+R   D+AK+  E  HGL++  +K  LF++   ++ +    S P P+
Sbjct:   17 FELNNAIIPLSST--TLDSIFAYDNEAQRAILHAQPWKTDPHFFQKVRISAVALIKMVMHARSGGIYEIMGLMQGKIDVENRTLYVMDSFALPVEGTETRVNAQNEAYEYMVQYLDHSKEVGRLENVVGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVAIVIDPNRTISSGKVDIGAFRTFPEGYTSSSSIGGGDSEYQSIPLSKIEDFGVHANEYYPLEVEHFKSSLDGKLLDLLWNKYWQNTLSQSPLVSNRAYTTSQIRDLADKLAQTNAAVLNRNSVSSAPFTTTAGAASVRIGAGKDVAAETEQNSGGSAKDTPAGTAQDAAGLVKEFEQRSKMSAISRASNDAAKLASEANHGLLASQLKHTLFHN-HTATPTPASASAPTPI 404          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_EMENI (COP9 signalosome complex subunit 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rri1 PE=1 SV=2)

HSP 1 Score: 370.163 bits (949), Expect = 2.599e-121
Identity = 180/333 (54.05%), Postives = 229/333 (68.77%), Query Frame = -2
Query:  578 AQKTWELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPIS--EYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPLGPPRKKLQ---EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV 1561
            AQ +WELEN +  +   DP  DS++ YDE         +PW  DPHYFK V+ISA+ALLKMV+HARSGG++EVMGLMQG    +  +V DAF LPVEGTETRVNAQ +A EYMV Y Q+ ++AGR+EN VGWYHSHPGYGCWLSGIDVSTQ + QQ   PF+AVVIDP RT+SAGKV+IGAFRT+P+ Y PP +     EYQT+PLNK EDFG H   YY+L+++ FKS+LD  +L LLWNKYWV TLS SPL    DY + Q+ DL++K  +    +  +      PPR        + QL ++ +D  +I  E+V GL++  +K  LF  +
Sbjct:    4 AQLSWELENAVTLI---DPQRDSLYRYDEETHKYLSDTRPWTKDPHYFKSVRISAVALLKMVMHARSGGSLEVMGLMQGYILPNTFVVTDAFRLPVEGTETRVNAQDEANEYMVSYLQSCREAGRMENAVGWYHSHPGYGCWLSGIDVSTQDM-QQMSGPFVAVVIDPERTISAGKVDIGAFRTFPKDYTPPKEEQEEDEYQTVPLNKAEDFGAHASHYYSLEVSLFKSALDTEILSLLWNKYWVATLSQSPLFTTRDYGSKQMLDLSQKTRRVARGIESN------PPRGGAPTQVRDQQLERVVKDGQRIVSEEVKGLLAAEVKMQLFQGI 326          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_GIBZE (COP9 signalosome complex subunit 5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.270e-119
Identity = 176/334 (52.69%), Postives = 234/334 (70.06%), Query Frame = -2
Query:  578 AIAQKTWELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISE-YQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGP---LGPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV 1567
            A A K WEL+NN+  V   DP  D+++ +D  AQ    +E+PW  DP +FK V+ISA AL+KM +HARSGG +EVMGLMQG T GD  IV DAF LPVEGTETRVNAQ +A EY+V+Y    +  GR ENVVGWYHSHPGYGCWLSGIDV T+ + QQFQ+PFLAVVIDP RT+++GKV+IGAFRTYP  YKP     S+ +Q +PL K  +FG H  +YY+L++++FKSSLD HLL+LLW+KYWV TLS +PL+ N DY   Q+ DL+ K+++A   +  +R G    +G   K    +  + K+ +++  I  ++  GL++  +K  LFN +
Sbjct:    3 ASALKAWELDNNVQLV---DPKRDALYNFDADAQKAINKEQPWKQDPSHFKHVRISATALIKMTMHARSGGNLEVMGLMQGYTQGDTFIVTDAFRLPVEGTETRVNAQDEANEYIVEYLDLCRAQGRQENVVGWYHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVIDPDRTINSGKVDIGAFRTYPADYKPSGGVTSDGFQAVPLAKAAEFGAHASRYYSLEVSHFKSSLDSHLLELLWHKYWVQTLSQNPLITNRDYGNKQLLDLSSKIKEATTGITRNRAGQGMMMGMSTKS--SDKAVDKLAKEANLIASKERSGLIANQVKASLFNDL 331          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_CRYNJ (COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 1.363e-117
Identity = 184/355 (51.83%), Postives = 240/355 (67.61%), Query Frame = -2
Query:  581 SAIAQKTWELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHS----RIGPLGPPR----------KKL-----------QEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNS 1570
            ++ A+KT+E+ NN+  V   DPS+ +IF Y    +     E PW  DPHYF  VKISA+AL+KMV HARSGG  E+MG+M GK       +MD  ALPV+GTETRVNA  +A EYMV++   N +AG+ E + GWYHSHPGYGCWLSGIDV+TQ+ NQ+F +P+LAVVIDP RTVSAGKVEIGAFRTYPEGY PP    S+YQ+IP++KIEDFGVH   YY L +  +KS LD  +LDLLWNKYWV TLSS+ L+ N +Y   Q+ DL  KL  A   +++S    ++ P  P            KKL           +EE+ L K+T++S++IT E  +G++SQ++K+ LFN+
Sbjct:    2 ASTARKTFEINNNVQVV---DPSA-AIFQYSREEEKLLDDEAPWRTDPHYFHTVKISAVALIKMVTHARSGGIYEIMGIMYGKVRDGTFWIMDVAALPVQGTETRVNAGNEAMEYMVNFQTANAEAGKGELLRGWYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVSAGKVEIGAFRTYPEGYTPPATGNSQYQSIPMDKIEDFGVHANAYYPLKVEIYKSKLDEKMLDLLWNKYWVATLSSNSLVSNLEYSTSQVQDLNAKLRAASQSISNSSSKLKLKPTQPTTKGKETTEGSDKKLKKGEKEFSGVEEEETPLNKVTQESSRITSEAENGIISQLLKEKLFNT 352          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_CRYNB (COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 1.363e-117
Identity = 184/355 (51.83%), Postives = 240/355 (67.61%), Query Frame = -2
Query:  581 SAIAQKTWELENNILTVETPDPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHS----RIGPLGPPR----------KKL-----------QEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNS 1570
            ++ A+KT+E+ NN+  V   DPS+ +IF Y    +     E PW  DPHYF  VKISA+AL+KMV HARSGG  E+MG+M GK       +MD  ALPV+GTETRVNA  +A EYMV++   N +AG+ E + GWYHSHPGYGCWLSGIDV+TQ+ NQ+F +P+LAVVIDP RTVSAGKVEIGAFRTYPEGY PP    S+YQ+IP++KIEDFGVH   YY L +  +KS LD  +LDLLWNKYWV TLSS+ L+ N +Y   Q+ DL  KL  A   +++S    ++ P  P            KKL           +EE+ L K+T++S++IT E  +G++SQ++K+ LFN+
Sbjct:    2 ASTARKTFEINNNVQVV---DPSA-AIFQYSREEEKLLDDEAPWRTDPHYFHTVKISAVALIKMVTHARSGGIYEIMGIMYGKVRDGTFWIMDVAALPVQGTETRVNAGNEAMEYMVNFQTANAEAGKGELLRGWYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVSAGKVEIGAFRTYPEGYTPPATGNSQYQSIPMDKIEDFGVHANAYYPLKVEIYKSKLDEKMLDLLWNKYWVATLSSNSLVSNLEYSTSQVQDLNAKLRAASQSISNSSSKLKLKPTQPTTKGKETTEGSDKKLKKGEKEFSGVEEEETPLNKVTQESSRITSEAENGIISQLLKEKLFNT 352          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_NEUCR (COP9 signalosome complex subunit 5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csn-5 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 3.167e-112
Identity = 167/329 (50.76%), Postives = 220/329 (66.87%), Query Frame = -2
Query:  536 DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKP---PDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAH-SRIGPLGPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPE 1510
            D   D+++ YD  A       +PW ND  YFK V+IS++A++KMV+HARSGG +EVMG+MQG  +G  +++ DA+ LPVEGTETRVNAQ +A EYMV+Y +  ++  RLENV+GWYHSHPGYGCWLSGIDV TQ L QQF EPF+AVVIDP RTVS  KVEIGAFRT PEG KP    +    + Q++PLNK+EDFG H  +YYALD+ +FKS+LD  LL+ LWNKYWV TL+ +PLL N DY + Q+ DL  ++ +A   L   S  G  GP    + +   + K+  +  +I  ++  GLM+  +K  +F       R Q +   PE
Sbjct:   11 DVQRDALYAYDSEAHKAVVNSRPWTNDHKYFKTVRISSVAMIKMVMHARSGGNLEVMGMMQGYIEGSTMVITDAYRLPVEGTETRVNAQDEANEYMVEYLRLCREENRLENVIGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVIDPDRTVSQNKVEIGAFRTIPEGIKPFAATNTTTGDGQSVPLNKVEDFGAHSHRYYALDVEHFKSTLDSKLLETLWNKYWVQTLAQNPLLTNRDYTSSQMVDLGSRISKASKSLEMLSTTGQRGPKSDAVDQ--NIEKLLSEVKQIAAKERSGLMAAEVKGKVFGC---GCRGQAEGVQPE 334          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_YARLI (COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RRI1 PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 3.359e-104
Identity = 169/349 (48.42%), Postives = 220/349 (63.04%), Query Frame = -2
Query:  575 TWELENNILTVE-TPDPS--SDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEY--QTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPLG------------PPRKKLQEESQ------LAKITRDSAKITVEQVHGLMSQVIKDILFNSVR 1552
            T+++EN+I+ V+ TP      D ++ YD+  Q       PW  DP YF+ V +S++AL+KM +HARSGG IEVMG+M GK   +  +VMD + LPVEGTETRVNAQ +  E+MV+Y Q  K  GR EN+VGWYHSHPGYGCWLSGIDV TQ  NQQFQEPFLAVV+DP RT+SAGKVEIGAFRTYP+ YKPP     +   Q++PL+K +D+G H ++YY LD+++FKSSLD +LL LLWNK W  TLS S +  N DY +  + DL+EK  Q    L        G             P   L   S       + +  +D  +I  +++ GLMS  I+  LF   +
Sbjct:    6 TFQVENDIVDVDSTPQQGFDRDDLYKYDDVEQKAILAAHPWRTDPSYFRNVLVSSIALVKMAMHARSGGAIEVMGMMTGKILPNTFVVMDCYPLPVEGTETRVNAQQEGIEFMVEYLQGLKDVGRRENIVGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVVDPNRTISAGKVEIGAFRTYPKDYKPPKKATKQNQDQSVPLSKAKDYGAHSERYYELDVSFFKSSLDENLLQLLWNKNWAATLSQSTIQLNHDYTSKLMLDLSEKNAQLAIGLGEKTPQSQGRGFREAMSKADNEPHTNLLNYSTKGQWEAVNRSVKDGVQIGSDELQGLMSLEIQRRLFGRAK 354          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_DEBHA (COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.797e-89
Identity = 141/269 (52.42%), Postives = 184/269 (68.40%), Query Frame = -2
Query:  719 DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDD--PISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNG--DYVAGQISDLAEKLEQAE-NQLAHSRI 1510
            D  +D   ++   +     + +PW ++  YFK+  IS+LAL KM VHA+SGG IEVMG+M GK   ++IIVMD + LPVEGTETRVNAQA+ YEYMV Y + +KQ GR EN+VGWYHSHPGYGCWLSGIDV+TQ LNQ FQ+P+LA+VIDP +T   GKVEIGAFRT+P+ YK PD   P +  + +P +K +DFGVH  +YY+LDI  FKS+LD  +L+++ NK W+  L  S    N     +   +  L  KL++ E NQL    I
Sbjct:   30 DKHADYESFFSINSDESIMKARPWKSNAKYFKKTYISSLALCKMSVHAKSGGAIEVMGMMTGKIIKNSIIVMDVYPLPVEGTETRVNAQAEGYEYMVQYLENSKQVGRDENIVGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQGKVEIGAFRTFPDNYKSPDSAAPTNNTRGVPPSKQKDFGVHSDKYYSLDIQIFKSNLDTEILNIISNKSWIGKLIKSVNTANHQEQNMIENVFKLINKLQKKEVNQLNRFEI 298          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Match: CSN5_SCHPO (COP9 signalosome complex subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=csn5 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 7.960e-77
Identity = 116/243 (47.74%), Postives = 163/243 (67.08%), Query Frame = -2
Query:  788 DSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEG------YKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYV 1498
            +++F +DE  +    +E PW +DP +F+ VKISA+ALLKM+ H   G  +EVMG +QGK +G ++I++D+FALPVEGTETRVNA  +A EY V Y    K   R ENV+GWYHSHP YGCWLSG+DV TQ  NQ++Q+PF+AVV+DP R++ +  V IGAFRTYP G       K    P   ++ +P +KIED G H + YY+L ITYF S  +  + + L N+ W  +++   +L N +++
Sbjct:    6 ENVFRFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQGKVEGASLIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGVDVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFRTYPVGNDGSIRTKSRHHPSVLFKNLPSSKIEDAGAHAEAYYSLPITYFHSKAEKKVTEFLRNRNWSRSITECSILQNNEFL 248          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: K4D6N3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=LOC543616 PE=4 SV=1)

HSP 1 Score: 653.67 bits (1685), Expect = 0.000e+0
Identity = 311/357 (87.11%), Postives = 335/357 (93.84%), Query Frame = -2
Query:  521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            +A+AQ+TWELENNI+T + P      + +SD+IF+YD+AAQ KFQ+EKPW +DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDV+TQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQL+HSR G L   P++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV +S +SQ + S PEPM+ET
Sbjct:   11 AAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET 367          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: B9N696_POPTR (COP9 complex family protein OS=Populus trichocarpa GN=POPTR_0006s29000g PE=4 SV=1)

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 314/360 (87.22%), Postives = 336/360 (93.33%), Query Frame = -2
Query:  521 SAIAQKTWELENNILTVETPDPSSDSI----------FYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPLGPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            S+IA+KTWELENNI+ ++T  P++             FY+DEAAQAKFQ+EKPW+NDP+YF+RVKISALALLKMVVHARSGGTIEVMGLMQGKTDGD+IIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENV+GWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDP+SEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLE AENQLAHSR+GPL  P++K  EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV QS+RSQ + SGPEPM+ET
Sbjct:    7 SSIAKKTWELENNIIPIDTATPTTTDTSSSSSSSDAIFYFDEAAQAKFQKEKPWSNDPNYFRRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEHAENQLAHSRLGPLMTPQRKKDEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQSNRSQTEPSGPEPMVET 366          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: W9S9C6_9ROSA (COP9 signalosome complex subunit 5b OS=Morus notabilis GN=L484_002292 PE=4 SV=1)

HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 325/361 (90.03%), Postives = 339/361 (93.91%), Query Frame = -2
Query:  521 SAIAQKTWELENNILTVETPDP----------SSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            S IAQ+TWELENNI+ +ETP P          SSD++FYYDEAAQAKFQQEKPW+NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPD+P+SEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLD HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSR GPL  PP++K  EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS+RS  + SGP+PMIE+
Sbjct:    8 SQIAQQTWELENNIIPMETPTPPATAKSSGGDSSDAVFYYDEAAQAKFQQEKPWSNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPVSEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPPQRKKDEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSNRSHAEPSGPDPMIES 368          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: D6CIB3_SOLLC (CSN5 protein OS=Solanum lycopersicum GN=csn5 PE=2 SV=1)

HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0
Identity = 309/357 (86.55%), Postives = 333/357 (93.28%), Query Frame = -2
Query:  521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            +A+AQ+TWELENNI+T + P      + +SD+IF+YD+AAQ KFQ+EKPW +DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDV+TQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQ EN L+HSR G L   P++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV +S +SQ + S PEPM+ET
Sbjct:   11 AAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQGENHLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET 367          
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Match: Q9FR56_SOLLC (JAB OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 647.506 bits (1669), Expect = 0.000e+0
Identity = 308/357 (86.27%), Postives = 333/357 (93.28%), Query Frame = -2
Query:  521 SAIAQKTWELENNILTVETP------DPSSDSIFYYDEAAQAKFQQEKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRIGPL-GPPRKKLQEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSSRSQNDQSGPEPMIET 1570
            +A+AQ+TWELENNI+T + P      + +SD+IF+YD+AAQ KFQ+EKPW +DPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMV+YSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDV+TQMLNQQ+QEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYY+LDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLL NGDYVAGQISDLAEK+EQAEN L+HSR G L   P++K +EESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV +S +SQ + S PEPM+ET
Sbjct:   11 AAMAQQTWELENNIVTTDAPSGSAPENSASDAIFHYDDAAQTKFQREKPWTSDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVEYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVTTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDDPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLENGDYVAGQISDLAEKMEQAENHLSHSRFGHLVAAPQRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVCKSGKSQTEPSDPEPMVET 367          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
CSN5_ASPFU7.942e-12353.85COP9 signalosome complex subunit 5 OS=Neosartorya ... [more]
CSN5_USTMA3.105e-12250.38COP9 signalosome complex subunit 5 OS=Ustilago may... [more]
CSN5_EMENI2.599e-12154.05COP9 signalosome complex subunit 5 OS=Emericella n... [more]
CSN5_GIBZE1.270e-11952.69COP9 signalosome complex subunit 5 OS=Gibberella z... [more]
CSN5_CRYNJ1.363e-11751.83COP9 signalosome complex subunit 5 OS=Cryptococcus... [more]
CSN5_CRYNB1.363e-11751.83COP9 signalosome complex subunit 5 OS=Cryptococcus... [more]
CSN5_NEUCR3.167e-11250.76COP9 signalosome complex subunit 5 OS=Neurospora c... [more]
CSN5_YARLI3.359e-10448.42COP9 signalosome complex subunit 5 OS=Yarrowia lip... [more]
CSN5_DEBHA2.797e-8952.42COP9 signalosome complex subunit 5 OS=Debaryomyces... [more]
CSN5_SCHPO7.960e-7747.74COP9 signalosome complex subunit 5 OS=Schizosaccha... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0097272 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K4D6N3_SOLLC0.000e+087.11Uncharacterized protein OS=Solanum lycopersicum GN... [more]
B9N696_POPTR0.000e+087.22COP9 complex family protein OS=Populus trichocarpa... [more]
W9S9C6_9ROSA0.000e+090.03COP9 signalosome complex subunit 5b OS=Morus notab... [more]
D6CIB3_SOLLC0.000e+086.55CSN5 protein OS=Solanum lycopersicum GN=csn5 PE=2 ... [more]
Q9FR56_SOLLC0.000e+086.27JAB OS=Solanum lycopersicum PE=2 SV=1[more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 267..287
NoneNo IPR availableGENE3D3.40.140.10coord: 55..187
e-value: 5.9E-9
score: 35.2
NoneNo IPR availablePANTHERPTHR10410EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATEDcoord: 7..352
NoneNo IPR availablePANTHERPTHR10410:SF6COP9 SIGNALOSOME COMPLEX SUBUNIT 5coord: 7..352
NoneNo IPR availableSUPERFAMILY102712JAB1/MPN domaincoord: 55..192
IPR000555JAB1/MPN/MOV34 metalloenzyme domainSMARTSM00232pad1_6coord: 55..192
e-value: 4.6E-47
score: 172.3
IPR000555JAB1/MPN/MOV34 metalloenzyme domainPFAMPF01398JABcoord: 53..164
e-value: 2.4E-34
score: 117.7

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097272 ID=g.barbadense_cottongen_reftransV1_0097272; Name=g.barbadense_cottongen_reftransV1_0097272; organism=Gossypium barbadense; type=contig; length=1847bp
GGAGAAAGATATAACTGCAAACTTGGGTTGGGCCCAACTCAACAATAGTT
TAGTAATATGTTGTAGACTTCAGTTGTTGATTATACGACACAAAGGCCTA
GTTCACCTGAGTCCAATGGACATTTTTTTTCCTTTTGGTGTTCTTCATTT
CACTGCAAGTATTCTCAACTAGTACCCCTTCTAATTTTGTAAAACTGCCA
GACAGGAATCAAATTAAGGAAATTTTATCACTCCACTCCATAACCAGCTT
ACATAGGAAAATTGAAATTAACAATTTTAAAATACTGTGATTTGATTCCA
TGCAAATATTTCTTCAACAACAATGCATAAACTAAGAATTATGCAAAAAG
CTTAGTTCAAAACAAATTAAGACCCCTTCCCAACAGGATAGGCTTACATC
AGTAGTGCAAGGAAGGGTACAAAACTATCCAGCCTGGAATCCAATATATA
TTTCCTTCTTGTAAAAAACTGGTCTCTCACGCTCAAGGTAACCATTTCAT
CTGGCAGGATGTTAGAATTAGGTTTCAATCATAGGCTCAGGACCAGACTG
ATCGTTCTGGGACCTACTCGACTGTCGTACAGAGTTGAAAAGAATGTCTT
TGATGACCTGTGACATTAAACCATGGACTTGCTCCACAGTTATCTTTGCA
CTATCTCTAGTAATCTTAGCAAGCTGAGATTCTTCCTGCAACTTCTTTCG
AGGGGGTCCTAGTGGGCCAATGCGAGAGTGAGCCAATTGGTTCTCTGCTT
GCTCCAGCTTTTCAGCTAAATCTGAAATTTGTCCTGCAACATAATCTCCA
TTACCCAAGAGAGGTGAAGAAGAAAGGGTGTTTACCCAGTACTTATTCCA
TAACAGATCCAGGAGGTGACAATCAAGTGAGGATTTGAAATAAGTGATGT
CCAATGCATAATACTGTTTACAATGCACACCAAAGTCTTCAATCTTATTC
AGAGGAATGGTCTGATATTCAGAGATAGGGTCATCAGGAGGCTTATATCC
TTCAGGGTATGTCCTGAAAGCTCCAATCTCAACTTTTCCAGCGGAAACAG
TCCTTGTTGGGTCAATTACAACCGCCAGGAAGGGCTCCTGGAACTGCTGG
TTAAGCATTTGGGTTGAAACATCAATACCGGACAGCCAGCATCCATACCC
GGGATGTGAATGGTACCATCCAACAACATTTTCCAATCGCCCAGCCTGCT
TGTTGGTCTGGGAATAATCGACCATATACTCATAGGCATCCGCCTGAGCG
TTAACCCTAGTCTCAGTGCCTTCAACAGGCAAAGCAAAGGCGTCCATGAC
AATGATAGCATCGCCGTCAGTCTTGCCTTGCATCAGCCCCATCACCTCTA
TGGTACCACCAGATCGGGCGTGGACAACCATCTTAAGAAGAGCGAGCGCA
GAGATCTTAACGCGCTTGAAGTAGTGAGGATCATTGGCCCAAGGCTTCTC
TTGCTGGAACTTGGCTTGAGCCGCCTCGTCGTAGTAGAATATAGAATCCG
ATGAAGGGTCAGGTGTCTCGACGGTAAGTATATTGTTTTCTAATTCCCAT
GTTTTCTGAGCTATGGCAGAATCCATTCTTGTTCTTCAAATTCTCTCTAA
CTGAAGCACCCCAGGCCTAGGTTTTAATTTTATAGATATCAATTATCAAG
CACCGAGAGGAGAAGAGTGGGGAGAGAGGGATGGATTGAAAAAACCATCG
CCATTCGCCACCCTCCCCTAGGATTGAGGCCCATTACGACACTGTTCGGC
AGTTATTGGGCTTGGCCTTTAATTCTGGCTCCACAATACTGGTTTGGTGG
CTCACTGATTATATAATTTCCTTTTAATTATCATGCATGACATAGCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding