g.barbadense_cottongen_reftransV1_0097269, g.barbadense_cottongen_reftransV1_0097269 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097269 vs. ExPASy TrEMBL
Match: V4URI3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007959mg PE=4 SV=1) HSP 1 Score: 421.394 bits (1082), Expect = 2.127e-135 Identity = 204/479 (42.59%), Postives = 320/479 (66.81%), Query Frame = -3 Query: 401 VKRKMEETESRNSSIILAKEETERPDPLNKFKDYKGGWDITSKHYLASVGYSSAPFALMAIVWFMLFGIFLLXXXXXXXXCHRNKPYGYSRLAYACSLIFLILFTIATVAGCALMFTGEGKFLASVNDVSHYIVNQGLSIYDNIIGIQNFLISAKNVVLNNKFVPDDLKGEVDKANKLIDSVGSLPRIKSQDITDEIRKLLKQINTALITITVXXXXXXXXXXXXXXLGMKTCVYMFVVIGWIVITLTFFLCGLFLVFHNIVSDTCIAMDEWIQDPMADSAMGEVLPCFDMAFGEEIKEAGKGVTTNVNDLLNQFITVLANNN-------TANNQSGPFVPLICDPYKHGDSQESC-GDEVPLKNATEEWKKYVCQVSEDGDCTTPGRLTPDMYTEMIKAVNISNGLYDYNPFIAGVADCSIIQDTLKNITTNHCPGLKKYSEWVYSGLVAATGSVMFSLFFWVLYARERRHRKYTKRI 1813 +KR + E + NS++ILA++ T+R DP++ F YKGGW+I++KHY ASVG+++APF ++A +WF++FG+ L C+ CCC R +PYGYSR YA SLI L+ FTI+ + GC +++TG+GKF +S D +Y+V Q +++ + ++L +AK + +N+ + D++ +DK ++ I+S + +++ + +I+ L + ALI + ML LAFLGFLFS+ G++ VY V++GWI++ TF LCG+FL+ HN+V+DTC++MDEW+++P A +A+ ++LPC D A +E + K VT + ++++ I + N N NQSGP +P++C+P+ + C EV NATE WK Y+CQ S G C TPGRLTP ++ +M AVN+S LY Y PF+ + DC+ ++DT +I+ +HCPGL+++S+W+Y GL + +VM SL FWV+YARERRHR YTK + Sbjct: 57 LKRYLAEEPTDNSTLILAEKRTQRKDPIDNFHKYKGGWNISNKHYWASVGFTAAPFFIIAGIWFVVFGLSLCFMCLHYCCCRR-EPYGYSRTCYALSLILLVFFTISAIVGCIVLYTGQGKFHSSTLDTLNYVVKQAHITSESLQNVSDYLAAAKTIGVNSVTLAPDVQSNIDKIDRKINSSATTLSYQTKKNSKDIKDALDSVGLALIIVAAVMLFLAFLGFLFSVFGLQCLVYFLVILGWILVAGTFILCGIFLLLHNVVADTCVSMDEWVKNPTAHTALDDILPCVDNATAQETLKQTKTVTNQLVSVVDRIIINVVNRNFLPQAGIVYYNQSGPLLPVLCNPFNSDLTNRQCVASEVDFSNATELWKNYICQPSSSGICKTPGRLTPTLHNQMASAVNVSYALYRYGPFLVNLQDCTFVRDTFTDISRDHCPGLQRHSKWIYIGLFMVSAAVMLSLIFWVIYARERRHRVYTKNL 534
BLAST of g.barbadense_cottongen_reftransV1_0097269 vs. ExPASy TrEMBL
Match: A0A087HCS7_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G307800 PE=4 SV=1) HSP 1 Score: 420.624 bits (1080), Expect = 3.728e-135 Identity = 216/482 (44.81%), Postives = 308/482 (63.90%), Query Frame = -3 Query: 377 EETESRNSSIILAKEETERPDPLNKFKDYKGGWDITSKHYLASVGYSSAPFALMAIVWFMLFGIFLLXXXXXXXXCHRNKPYGYSRLAYACSLIFLILFTIATVAGCALMFTGEGKFLASVNDVSHYIVNQGLSIYDNIIGIQNFLISAKNVVLNNKFVPDDLKGEVDKANKLIDSVGSLPRIKSQDITDEIRKLLKQINTALITITVXXXXXXXXXXXXXXLGMKTCVYMFVVIGWIVITLTFFLCGLFLVFHNIVSDTCIAMDEWIQDPMADSAMGEVLPCFDMAFGEEIKEAGKGVTTNVNDLLNQFITVLANNNTAN-------NQSGPFVPLICDPYKHGDSQESCG-DEVPLKNATEEWKKYVCQVSEDGDCTTPGRLTPDMYTEMIKAVNISNGLYDYNPFIAGVADCSIIQDTLKNITTNHCPGLKKYSEWVYSGLVAATGSVMFSLFFWVLYARERRHRKYTKRINKGYDESP 1798 EE NSS+ILA + T+R DP + FK Y GGW+I++ +Y SV +++APF ++A VWF+ FG+ L C+ CCC R +PYGYS+LAYA SLI LILFT+A + GC ++TG+GKF AS D Y+V+Q +N+ + ++L +AK V + + +P D+ +D I+S + +K+ + D I+ +L + AL+ I ML LAF+GF+ SI G++ VY V++GWI++T TF LCG+FL+ HN+V DTC+AMDEW+Q P A +A+ ++LPC D A E K VT + +L++ I + N N NQSGP +PL+C+P+ S C EV L NATE WK + CQ+ G C+T GRLTP +YT++ AVN+S GLY Y PF+A + C+ ++ T +I +HCPGLK+Y+ W+Y GLV + +VM SL FWV+YARERRHR YTK N + E P Sbjct: 47 EENGQNNSSMILAAKRTKRKDPHDNFKLYTGGWNISNTNYWTSVAFTAAPFFVIAGVWFVFFGLCLSLICLLHCCCAR-RPYGYSKLAYALSLILLILFTLAAIVGCVFLYTGQGKFHASTTDTLDYVVSQANLTSENLRNVSDYLNAAKKVDVQSIVLPGDVLSSIDNIQGKINSSATTLSVKTMENQDRIQDVLDNMRLALVIIAAVMLFLAFIGFVLSIFGLQCLVYTLVILGWILVTGTFVLCGVFLLLHNVVGDTCVAMDEWVQHPTAHTALDDILPCVDNATARETLARTKLVTYQLVNLVDSSINNMTNRNFPPQFRPLYYNQSGPLMPLLCNPFNADLSDHQCQPGEVHLSNATEVWKNFTCQIVTPGTCSTQGRLTPKLYTQLAAAVNVSYGLYRYGPFLADLQSCNFVRSTFTDIERDHCPGLKRYTRWIYVGLVLVSTAVMLSLVFWVIYARERRHRVYTKDYNAMHSEVP 527
BLAST of g.barbadense_cottongen_reftransV1_0097269 vs. ExPASy TrEMBL
Match: A0A0D2TKI3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G060000 PE=4 SV=1) HSP 1 Score: 421.394 bits (1082), Expect = 3.755e-135 Identity = 229/552 (41.49%), Postives = 329/552 (59.60%), Query Frame = -3 Query: 386 KLKQFYIIPALFLILSTLFSVSHG----------------------RKNENVDLQSDGIMRL------VKRKMEETESRNSSIILAKEETERPDPLNKFKDYKGGWDITSKHYLASVGYSSAPFALMAIVWFMLFGIFLLXXXXXXXXCHRNKPYGYSRLAYACSLIFLILFTIATVAGCALMFTGEGKFLASVNDVSHYIVNQGLSIYDNIIGIQNFLISAKNVVLNNKFVPDDLKGEVDKANKLIDSVGSLPRIKSQDITDEIRKLLKQINTALITITVXXXXXXXXXXXXXXLGMKTCVYMFVVIGWIVITLTFFLCGLFLVFHNIVSDTCIAMDEWIQDPMADSAMGEVLPCFDMAFGEEIKEAGKGVTTNVNDLLNQFITVLANNNTAN-------NQSGPFVPLICDPYKHGDSQESC-GDEVPLKNATEEWKKYVCQVSEDGDCTTPGRLTPDMYTEMIKAVNISNGLYDYNPFIAGVADCSIIQDTLKNITTNHCPGLKKYSEWVYSGLVAATGSVMFSLFFWVLYARERRHRKYTKRINKGYD 1933 L F + FL LST + SHG V+L S GI R + + + E SS+ LA E T R DPLN FK Y GGWDI +HY ASV Y++ P +A +WF+ FG+ LL CI CC R +PYGY ++AYA SL+FL LFTIA + GC +++ G+ +F +S Y+VNQ + + + L +AK V ++ F+P +++ ++D+ I+S S K+ D +D+IR LL + ALI I ML+L FLG LFSI GM+ VY+ VV+GW+++T TF LCG FLV HN +DTC+AM +W+Q+P A +A+ ++LPC D A +E + VT+ + +++N IT ++N N + NQSGP VP++C+P+ ++ +C E+ NATE W+ YVCQVS G CTT GR+TP +Y +M AVN+ + LY+Y PF+ + DC+ +++T + HCPGL++YS WVY GLV + +VM SL FWV+Y RERRHR YTK+IN+G + Sbjct: 8 SLLSFTPVLITFLFLSTFLTFSHGVSVSLSPTPLAQQLTSGKVNGSEAKSGVEL-SWGITRRSVVEVPIGQPLPPLEVTTSSLALAAERTYRKDPLNGFKRYTGGWDIRERHYWASVAYTAVPLFAIAAIWFVGFGLCLLLVCIFYFCCKR-QPYGYYQIAYATSLVFLALFTIAAILGCIVLYVGQDRFHSSTTKTLQYVVNQADMTVRKLKDVSDSLATAKQVGVDKVFLPSNVQTDIDEIGTKINSSASTLADKTVDNSDDIRDLLDSVRVALIVIAAIMLVLTFLGLLFSIFGMQLLVYILVVLGWLLVTGTFILCGTFLVLHNAAADTCVAMHDWMQNPTAHTALDDILPCVDNATTQETLLKSREVTSQLVEVINTVITNVSNINFSPNFPTMYFNQSGPLVPVLCNPFSADLTERTCTAGELNADNATEVWRNYVCQVSPTGICTTTGRITPALYDQMTAAVNVGSALYNYAPFLVQLQDCTFVRETFTGVYVEHCPGLRRYSRWVYIGLVMVSTAVMLSLIFWVIYGRERRHRLYTKQINEGAE 557
BLAST of g.barbadense_cottongen_reftransV1_0097269 vs. ExPASy TrEMBL
Match: Q8H0U2_ARATH (Putative uncharacterized protein At2g12400 OS=Arabidopsis thaliana GN=At2g12400 PE=2 SV=1) HSP 1 Score: 420.624 bits (1080), Expect = 4.829e-135 Identity = 223/492 (45.33%), Postives = 318/492 (64.63%), Query Frame = -3 Query: 365 LVKRKMEETESRNSSIILAKEETERPDPLNKFKDYKGGWDITSKHYLASVGYSSAPFALMAIVWFMLFGIFLLXXXXXXXXCHRNKPYGYSRLAYACSLIFLILFTIATVAGCALMFTGEGKFLASVNDVSHYIVNQGLSIYDNIIGIQNFLISAKNVVLNNKFVPDDLKGEVDKANKLIDSVGSLPRIKSQDITDEIRKLLKQINTALITITVXXXXXXXXXXXXXXLGMKTCVYMFVVIGWIVITLTFFLCGLFLVFHNIVSDTCIAMDEWIQDPMADSAMGEVLPCFDMAFGEEIKEAGKGVTTNVNDLLNQFITVLANNNTAN-------NQSGPFVPLICDPYKHGDSQESCG-DEVPLKNATEEWKKYVCQVSEDGDCTTPGRLTPDMYTEMIKAVNISNGLYDYNPFIAGVADCSIIQDTLKNITTNHCPGLKKYSEWVYSGLVAATGSVMFSLFFWVLYARERRHRKYTKRINKGYDESPLVGG 1816 +++R + E NSS+ILA + T R DP + FK Y GGW+I++ HYL SVGY++APF ++A+VWF+ FG+ L C+C CCC R + YGYSR+AYA SLI LI FTIA + GC ++TG+GKF AS D Y+V+Q +N+ + ++L +AK V + + +P D+ +D I+S + +K+ + D+I+ +L + AL+ I ML LAF+GFL SI G++ VY V++GWI++T+TF LCG FL+ HN+V DTC+AMD+W+Q+P A +A+ ++LPC D A E K VT + +LL+ I+ + N N NQSGP +PL+C+P+ S C +V L NATE WK + CQ+ G C+TPGRLTP +Y++M AVN+S GLY Y PF+A + C ++ T +I +HCPGLK+Y++W+Y GLV + SVM SL FWV+YARERRHR YTK N + E P G Sbjct: 50 VIERVIAEESGENSSLILAAKRTRRKDPADNFKLYTGGWNISNSHYLTSVGYTAAPFIIIALVWFVFFGLSLSLICLCYCCCAR-QSYGYSRVAYALSLILLISFTIAAIIGCVFLYTGQGKFHASTTDTLDYVVSQANLTSENLRNVSDYLNAAKKVDVQSSILPQDVLSSIDNIQGKINSSATTLSVKTMENQDKIQNVLDIMRLALVIIAAVMLFLAFIGFLLSIFGLQCLVYTLVILGWILVTVTFVLCGGFLLLHNVVGDTCVAMDQWVQNPTAHTALDDILPCVDNATARETLTRTKLVTYQLVNLLDNAISNMTNRNFPPQFRPLYYNQSGPLMPLLCNPFNADLSDRQCQPGQVHLNNATEVWKNFTCQIVTPGTCSTPGRLTPKLYSQMAAAVNVSYGLYKYGPFLADLQGCDFVRSTFTDIERDHCPGLKRYTQWIYVGLVVVSASVMSSLVFWVIYARERRHRVYTKDYNAMHSEDPRSKG 540
BLAST of g.barbadense_cottongen_reftransV1_0097269 vs. ExPASy TrEMBL
Match: A0A0A0LFD9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009430 PE=4 SV=1) HSP 1 Score: 420.624 bits (1080), Expect = 5.358e-135 Identity = 227/531 (42.75%), Postives = 330/531 (62.15%), Query Frame = -3 Query: 404 FYIIPALF--LILSTLFSVSHGRKN----------ENV----DLQSDGIMRLVKRKMEETESRNSSIILAKEETERPDPLNKFKDYKGGWDITSKHYLASVGYSSAPFALMAIVWFMLFGIFLLXXXXXXXXCHRNKPYGYSRLAYACSLIFLILFTIATVAGCALMFTGEGKFLASVNDVSHYIVNQGLSIYDNIIGIQNFLISAKNVVLNNKFVPDDLKGEVDKANKLIDSVGSLPRIKSQDITDEIRKLLKQINTALITITVXXXXXXXXXXXXXXLGMKTCVYMFVVIGWIVITLTFFLCGLFLVFHNIVSDTCIAMDEWIQDPMADSAMGEVLPCFDMAFGEEIKEAGKGVTTNVNDLLNQFITVLANNNTAN--------NQSGPFVPLICDPYKHGDSQESC-GDEVPLKNATEEWKKYVCQVSEDGDCTTPGRLTPDMYTEMIKAVNISNGLYDYNPFIAGVADCSIIQDTLKNITTNHCPGLKKYSEWVYSGLVAATGSVMFSLFFWVLYARERRHRKYTKR 1921 F + P F L+ +LF VSH EN + Q R + E+ + NSS++LA++ T R DPL+ FK Y GGW+I+++HY ASV ++S PF+++ I WF+LFGI L C+CCCCC R +PYGYSR AYA SL FLI FTI+ + GC +++ G+GKF + + YIVNQ +N+ + +L SAK++ +++ F+ D++ +D I SV S + + +D I+K L + LI I MLLLAF+GFL SI G++ VY V++GWI++T+TFFLCG FL+ HN+V DTC+AM++W+Q+P A++A+ ++LPC D A ++I+ K V+ + L+N I ++N N NQSGP VP +C + + +C +EV L A WK + CQVS G CTT GRLTP +Y +M A N+S GLY Y PF+ + DC+ ++ +I+ NHCPGL+ Y++W+Y GLV +G+VMFSL FW++YARERRHR YTK+ Sbjct: 2 FLLRPIFFFSLLFYSLFLVSHSSLTVSALSAIPIFENSAGVEEFQVSEPWRTGRSLAEQDPAVNSSLVLAEDRTRRKDPLDDFKPYTGGWNISNQHYWASVAFTSIPFSVLGIAWFVLFGICLFITCLCCCCCRR-EPYGYSRTAYALSLAFLIFFTISAIVGCVVLYVGQGKFHSRTSSTLEYIVNQADGTAENLKNLSVYLSSAKSIKVDSIFLTPDIQKGIDDIGTKISSVSSTLTDAASNNSDTIQKGLDKNRLILIIIAAVMLLLAFIGFLCSIFGLQCVVYTLVILGWILVTVTFFLCGAFLLLHNVVGDTCVAMEDWLQNPTANTALDDILPCVDNATAKQIQSVTKNVSFQLVSLVNGVINTVSNVNPPPNIGPPVNYNQSGPLVPPLCSRFNSDLTSRTCLANEVQLNEAPAVWKDFTCQVSASGICTTTGRLTPALYNQMTAAANVSYGLYRYGPFLVELVDCTFVRQVFTDISNNHCPGLRLYTKWIYVGLVLMSGAVMFSLIFWIIYARERRHRVYTKQ 531 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097269 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0097269 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097269 ID=g.barbadense_cottongen_reftransV1_0097269; Name=g.barbadense_cottongen_reftransV1_0097269; organism=Gossypium barbadense; type=contig; length=2091bpback to top |