g.barbadense_cottongen_reftransV1_0097261, g.barbadense_cottongen_reftransV1_0097261 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0097261
Unique Nameg.barbadense_cottongen_reftransV1_0097261
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At02chromosomeg.barbadense_cottongen_reftransV1_0097261:1..2454 .
At02:9764983..9768881 +
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.445e-68
Identity = 111/134 (82.84%), Postives = 125/134 (93.28%), Query Frame = -3 
Query: 1691 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVS-EPTADENVKMASC 2089
             + L M+PQLEQIHGEIRD FRAL+NGFQRLDK+KDS RQSKQLEELT KMRECKRL+KEFDRE+KDEE++N PEVNKQLNDEKQSMIKELNSYVA+RKTYM+TLGNKK+ELFDMGAGVS EPTA+ENV++AS 
Sbjct:    2 ASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVSGEPTAEENVQVASS 135

HSP 2 Score: 224.942 bits (572), Expect = 2.093e-65
Identity = 116/133 (87.22%), Postives = 125/133 (93.98%), Query Frame = -3 
Query:  854 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 1252
             ++MSNQELVD GMK MDETDQAIERSK+VVEQT+EVGTQTA  LKGQTDQMGR+VN LDTIQFSIKKASQLVKEIGRQVATDKCIM FLFLIVCGV+AII+VKIVNPNNKDIRDIPGLAPPA SR+LLYLR+
Sbjct:  133 ASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYLRN 265
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS12_ARATH (Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.656e-66
Identity = 107/133 (80.45%), Postives = 123/133 (92.48%), Query Frame = -3 
Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVS-EPTADENVKMAS 2089
             +EL M+P LEQIHGEIRD FRAL+NGFQRLDK+KDS+RQSKQLEEL  KMR+CKRL+KEFDRE+KD E++N P+VNKQLNDEKQSMIKELNSYVA+RKTY+NTLGNKK+ELFD GAGVS EPTA+ENV+MAS
Sbjct:    2 ASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGVSGEPTAEENVQMAS 134

HSP 2 Score: 221.476 bits (563), Expect = 3.980e-64
Identity = 114/133 (85.71%), Postives = 123/133 (92.48%), Query Frame = -3 
Query:  854 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 1252
             + MSNQELVD GMK MDETDQAIERSK+VV QT+EVGTQTA  LKGQTDQMGR+VN+LDTIQFS+KKASQLVKEIGRQVATDKCIM FLFLIVCGVIAII+VKIVNPNNKDIRDIPGLAPPA SR+LLY R+
Sbjct:  133 ASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYFRE 265
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS11_ARATH (Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.073e-48
Identity = 98/134 (73.13%), Postives = 114/134 (85.07%), Query Frame = -3 
Query:  863 MTCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIP--GLAPPAPSRRLLY 1258
            +  + MSNQEL+D G   MD+TDQAIER KK+V++TI VGT T+  LK QT+QM R+VNELD+I FS+KKAS+LVKEIGRQVATDKCIM FLFLIV GVIAII+VKIVNPNNKDIRDIP  GLAPPA +RRLL+
Sbjct:  129 LLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMSRVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDIRDIPGVGLAPPAMNRRLLW 262

HSP 2 Score: 149.828 bits (377), Expect = 1.147e-38
Identity = 75/126 (59.52%), Postives = 97/126 (76.98%), Query Frame = -3 
Query: 1694 QLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLG--NKKIELFDMGAGVSEPTADENVKMAS 2065
            +L +I G+I D+FRALSNGFQ+L+K+KD+NRQS+QLEELT KMR+CK LIK+FDREIK  ES N    N+ LND +QSM+KELNSYVA++K Y + L   NK+++LFD   G  E   +ENV +AS
Sbjct:   10 ELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEHMEENVLLAS 132
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: PT148_ARATH (Probable sugar phosphate/phosphate translocator At1g48230 OS=Arabidopsis thaliana GN=At1g48230 PE=2 SV=2)

HSP 1 Score: 44.669 bits (104), Expect = 1.418e-10
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:  181 LEKPRIAVPYIQSNYRIFFSISLSALGSE------LGRTGAVTFRVAG 306
            LEKP I V  IQ N+ IFFS +L AL         +GRTGAVT RVAG
Sbjct:  214 LEKPNIDVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAG 261

HSP 2 Score: 44.2838 bits (103), Expect = 1.418e-10
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  305 AGVLKDWLPIALSSVVFSESTITGPNI 385
            AGVLKDW+ IALS+V+F ESTITG NI
Sbjct:  260 AGVLKDWILIALSTVIFPESTITGLNI 286
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: PT317_ARATH (Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 2.993e-10
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  305 AGVLKDWLPIALSSVVFSESTITGPNI 385
            AGVLKDW+ IALS+V+F ESTITG NI
Sbjct:  260 AGVLKDWILIALSTVIFPESTITGLNI 286

HSP 2 Score: 43.8986 bits (102), Expect = 2.993e-10
Identity = 28/56 (50.00%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:  157 WYFFLCLQLEKPRIAVPYIQSNYRIFFSISLSALGSE------LGRTGAVTFRVAG 306
            WY      LEKP + V  IQ N+ IFFS +L AL         +GRTGAVT RVAG
Sbjct:  211 WYV-----LEKPTMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAG 261
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0A0K9V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G000720 PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 8.169e-69
Identity = 114/130 (87.69%), Postives = 125/130 (96.15%), Query Frame = -3 
Query: 1691 LQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASC 2080
            LQM PQLEQIHGEIRD FRALSNGFQRLDK+KDS+RQSKQLEELTGKMRECKRLIK+FDREIKDEESKNPP+VNKQLNDEKQSMIKELNS+VA+RKTYMN+LGNK++ELFD G GVSEPTAD+NV+MAS 
Sbjct:    5 LQMTPQLEQIHGEIRDNFRALSNGFQRLDKIKDSSRQSKQLEELTGKMRECKRLIKDFDREIKDEESKNPPDVNKQLNDEKQSMIKELNSFVALRKTYMNSLGNKRVELFDEG-GVSEPTADDNVRMASS 133

HSP 2 Score: 222.631 bits (566), Expect = 1.390e-62
Identity = 116/132 (87.88%), Postives = 125/132 (94.70%), Query Frame = -3 
Query:  857 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLR 1252
             ++M+NQEL+D G KTMDETDQAI+R++KVVEQTIEVGTQTA  LKGQTDQMGRIVNELDTI FSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNK+IRDIPGLAPP P+RRLLYLR
Sbjct:  131 ASSMTNQELIDAGKKTMDETDQAIQRTQKVVEQTIEVGTQTAAQLKGQTDQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKNIRDIPGLAPPVPARRLLYLR 262
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: B9HXA1_POPTR (SNARE 12 family protein OS=Populus trichocarpa GN=POPTR_0010s00430g PE=4 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.172e-68
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = -3 
Query: 1691 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASC 2089
             +ELQM+PQLEQIHGEI+D FRALSNGFQRL+ +KDSNRQSKQLEELTG+M+ECKRLIKEFDREIK EESKNPPEVNKQLNDEKQSMIKELNSYV +RKTYMN+L NK++ELFDMGAG SEP A+ENV+MAS 
Sbjct:    2 ASELQMSPQLEQIHGEIKDNFRALSNGFQRLNNIKDSNRQSKQLEELTGRMKECKRLIKEFDREIKVEESKNPPEVNKQLNDEKQSMIKELNSYVQLRKTYMNSLDNKRVELFDMGAGASEPMAEENVRMASA 134

HSP 2 Score: 228.024 bits (580), Expect = 1.109e-64
Identity = 120/129 (93.02%), Postives = 126/129 (97.67%), Query Frame = -3 
Query:  866 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLL 1252
             +AMSNQELVD GMKTM+ETDQAIERSK+VVEQTIEVGTQTAGTLKGQT+QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFL LIVCGVIAII+VKIVNP+NKDIRDIPGLAPPAPSRRLL
Sbjct:  132 ASAMSNQELVDAGMKTMNETDQAIERSKQVVEQTIEVGTQTAGTLKGQTEQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLLLIVCGVIAIIIVKIVNPSNKDIRDIPGLAPPAPSRRLL 260
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: B9S000_RICCO (Novel plant snare, putative OS=Ricinus communis GN=RCOM_1003490 PE=4 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.771e-68
Identity = 113/132 (85.61%), Postives = 124/132 (93.94%), Query Frame = -3 
Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2089
              +LQM+PQLEQIHGEI+D  RALSNGFQRLDK+KDSNRQ+KQLEELT KMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIK+LNSYVA+RKTYMNTLGNKKIELFD+G G SEP A+ENV++AS
Sbjct:    2 AADLQMSPQLEQIHGEIKDNLRALSNGFQRLDKIKDSNRQTKQLEELTAKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKDLNSYVALRKTYMNTLGNKKIELFDVGPGASEPLAEENVQLAS 133

HSP 2 Score: 233.417 bits (594), Expect = 1.832e-66
Identity = 122/133 (91.73%), Postives = 128/133 (96.24%), Query Frame = -3 
Query:  854 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 1252
             + MSNQEL+D GMKTMDETDQAIERS KVV+QTIEVGTQTA +LKGQT+QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFL+VCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD
Sbjct:  132 ASEMSNQELIDAGMKTMDETDQAIERSNKVVQQTIEVGTQTAVSLKGQTEQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLVVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 264
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: I1LYG4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.810e-67
Identity = 110/132 (83.33%), Postives = 124/132 (93.94%), Query Frame = -3 
Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2089
             + LQM+PQ+EQIHGEIRD FRAL+NGFQ+LDK+KD+NRQS QLEELT KMRECKRLIKEFDREIKDEE +NPPEVNKQLNDEKQSMIKELNSYVA+RKTYMNT+GNKK+ELFD GAGVS PTA+ENV++AS
Sbjct:    2 ASNLQMSPQVEQIHGEIRDNFRALANGFQKLDKIKDANRQSNQLEELTDKMRECKRLIKEFDREIKDEEGRNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDNGAGVSVPTAEENVQLAS 133

HSP 2 Score: 223.016 bits (567), Expect = 9.718e-63
Identity = 119/141 (84.40%), Postives = 127/141 (90.07%), Query Frame = -3 
Query:  830 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ*KGDHF 1252
             + MSNQEL++ G KTMDETDQAIERSK+VV QTIEVGTQTA TLKGQT+QMGRIVNELD+IQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIV+PNNKDIRDIPGLAPP P+RRLLY R     GDH 
Sbjct:  132 ASEMSNQELINAGTKTMDETDQAIERSKQVVHQTIEVGTQTAATLKGQTEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVHPNNKDIRDIPGLAPPVPTRRLLYAR----SGDHL 268
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A0B2SIV2_GLYSO (Putative plant SNARE 13 OS=Glycine soja GN=glysoja_023567 PE=4 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.810e-67
Identity = 110/132 (83.33%), Postives = 124/132 (93.94%), Query Frame = -3 
Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2089
             + LQM+PQ+EQIHGEIRD FRAL+NGFQ+LDK+KD+NRQS QLEELT KMRECKRLIKEFDREIKDEE +NPPEVNKQLNDEKQSMIKELNSYVA+RKTYMNT+GNKK+ELFD GAGVS PTA+ENV++AS
Sbjct:    2 ASNLQMSPQVEQIHGEIRDNFRALANGFQKLDKIKDANRQSNQLEELTDKMRECKRLIKEFDREIKDEEGRNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDNGAGVSVPTAEENVQLAS 133

HSP 2 Score: 223.016 bits (567), Expect = 9.718e-63
Identity = 119/141 (84.40%), Postives = 127/141 (90.07%), Query Frame = -3 
Query:  830 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ*KGDHF 1252
             + MSNQEL++ G KTMDETDQAIERSK+VV QTIEVGTQTA TLKGQT+QMGRIVNELD+IQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIV+PNNKDIRDIPGLAPP P+RRLLY R     GDH 
Sbjct:  132 ASEMSNQELINAGTKTMDETDQAIERSKQVVHQTIEVGTQTAATLKGQTEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVHPNNKDIRDIPGLAPPVPTRRLLYAR----SGDHL 268
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
NPS13_ARATH2.445e-6882.84Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NP... [more]
NPS12_ARATH5.656e-6680.45Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NP... [more]
NPS11_ARATH1.073e-4873.13Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NP... [more]
PT148_ARATH1.418e-1056.25Probable sugar phosphate/phosphate translocator At... [more]
PT317_ARATH2.993e-1077.78Probable sugar phosphate/phosphate translocator At... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0K9V5_CUCSA8.169e-6987.69Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
B9HXA1_POPTR1.172e-6883.46SNARE 12 family protein OS=Populus trichocarpa GN=... [more]
B9S000_RICCO6.771e-6885.61Novel plant snare, putative OS=Ricinus communis GN... [more]
I1LYG4_SOYBN5.810e-6783.33Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2SIV2_GLYSO5.810e-6783.33Putative plant SNARE 13 OS=Glycine soja GN=glysoja... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 22..89
e-value: 1.8E-6
score: 37.5
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 27..89
score: 9.707
NoneNo IPR availableGENE3D1.20.5.110coord: 18..90
e-value: 1.3E-17
score: 62.9
NoneNo IPR availablePANTHERPTHR21230:SF27NOVEL PLANT SNARE 11coord: 17..135
NoneNo IPR availablePANTHERPTHR21230VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATEDcoord: 17..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 120..148
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..119
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 17..90
NoneNo IPR availableTMHMMTMhelixcoord: 99..116
IPR005606Sec20PFAMPF03908Sec20coord: 35..113
e-value: 5.4E-7
score: 29.3

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0097261 ID=g.barbadense_cottongen_reftransV1_0097261; Name=g.barbadense_cottongen_reftransV1_0097261; organism=Gossypium barbadense; type=contig; length=2454bp
CTTTTTGAAACATGAAAAAAAGATTTAAAAAAAATAAAAACACAAATGCC
CAACTCGCTGGCAAAATTTAATGTACGTAGATCTTATTATATTATATATT
AAGTGCAATATACCGGTGGCTGAAGGGTCAATGTTTGATCTCCCCTTTTT
GCAGTCTGGTACTTCTTTTTGTGCCTTCAGCTGGAGAAGCCTAGGATTGC
AGTTCCATATATACAATCGAATTACCGAATCTTTTTCTCCATTTCTCTTT
CTGCATTGGGCTCTGAACTTGGAAGAACTGGAGCTGTCACCTTCAGGGTC
GCTGGCTGGCGTTCTAAAGGACTGGTTACCGATTGCCCTTTCCTCTGTTG
TTTTTTCGGAGTCTACAATAACTGGGCCCAATATTTGTCATTCACAAATG
GTCACAGCAAGTATGTATTATGATGTGTTCATTAAGTTGGCAGCTGAGCA
CTAGTTTTATGATAAGCTCCAGTTCTGGTTCTAGGCTAACCCGGTCCAGA
TACCTATTTTTGGTTGAGATGAGCTTGGCCACAAAATTCATACATGTATA
TCCCCCAAGGACATTTGAAAATTATATGGAATTCACTTCAGAGATGACTT
ATTTCTAACCCTACAATAATCTTCAAAGTTCATTCAAATAATTCAACTGC
TCCCATAAAATTTACAAAGACAACAAACACCACCAACCGTATATGCACAT
CTCAGGCAAGAATCAATCATATAAAATCGAAAAGCGAAAAACCATCACAT
CCCTCAAATGCCAACTTCCCAATACTCCCCACTCCTGTCTCTATTCAAGC
ATAAGCAGAACAAAACCACTCACTTATTTGAAATGATCACCTTTTTACTG
CGGGTCCCTTAGATATAACAATCTCCTCGAAGGTGCTGGAGGTGCCAATC
CTGGAATATCTCTGATATCTTTGTTGTTCGGATTCACAATCTTCACAACT
ATGATGGCTATAACACCGCATACGATAAGAAAAAGAAATAGCATGATGCA
TTTATCAGTGGCTACCTGCCTACCAATCTCCTTCACCAGCTGGGAGGCCT
TCTTAATTGAAAACTGAATTGTATCCAGCTCATTTACAATACGGCCCATT
TGATCAGTTTGTCCTTTTAGAGTACCAGCAGTTTGAGTTCCTACTTCAAT
TGTTTGTTCAACAACCTTTTTTGAGCGTTCAATGGCCTGATCAGTCTCAT
CCATTGTCTTCATCCCATGATCAACAAGCTCTTGGTTTGACATTGCTGTG
CAAGTCATGCAATAGTAAGATAGTTTGATGAAAAAGTACAGTTAACCTCT
ACGCCGAGATTCTGTTGTTTTAAGTTCATAACTTTCAGTAAAGATAATGG
ACTAGATCAATTTTCTTGTAGCATCCAAAGTCGAGAATGCTTAGCCTTGT
TCCCAAACTGTCCAACATTCAAAGAAGACTTCACATCCCAGTTTTCTAGG
CAGTAGTTGATTGAAAATGCATATAGCATGACAATATATAAAATCAACTA
AATCGGCAAAATCATAATTGATACAAGATACTTTGGTATTAGAATGTATT
TAAATACATCAAATTAAAAGAAAAAACCAATGGCAGGTAATGAAAGCATA
CCCATCATTTTCAGAACTAAGAGTCTTTGATCCAAAGTAAATGTTCTATA
TAAATCAAACTCAATGGAGGGTTAGAAGAAGTAAGATCTTACATGATGCC
ATTTTAACATTTTCATCAGCTGTAGGTTCACTGACTCCAGCTCCCATATC
AAAGAGTTCAATTTTCTTGTTACCAAGGGTATTCATGTATGTTTTCCTCA
TAGCTACATACGAATTCAGTTCTTTGATCATAGACTGCTTCTCATCATTG
AGTTGCTTGTTCACTTCGGGAGGATTTTTGCTTTCCTCATCTTTAATTTC
ACGATCAAACTCCTTGATTAATCTTTTACATTCCCTCATCTTGCCAGTAA
GCTCTTCCAGCTGTTTGCTTTGCCTATTGGAATCTTTCATCTTATCCAGT
CTCTGGAAGCCATTTGAAAGAGCACGGAAAAGATCGCGGATTTCGCCATG
GATCTGCTCCAACTGAGGATTCATCTGCAACTCCGTGGTGGCCATCTAAT
CCGCCGATTGAAGATTTTCAATTTCCCAAAAGTATTTCAGTTCTCATTCA
AAACCCCCCATAGTACAAAATTCATAAAAAAAAAAAAACATAAACACTCA
CTCCCACGCTGGGAATTTTTTTTTATTTTTTTCCCAAAATTTTCTCTATT
TTTAGAAAAAAAAAAGGGGAGAAATTTGGAAAAATGAAATTGAAAATTGA
AGGGTTCTAGAGAGAGAGAGAGAAAACAAAAGTTAGGAGAAAAGCAACAA
AGTGTGGAATGGAATTAAACTGTAACACAGAGAGAGATAACAAGAGAATC
GCTGTCTCTGTGTGTCTTTTATTATTTTATTGTTATTAGATGATTTTTAT
TTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR005606Sec20
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding