g.barbadense_cottongen_reftransV1_0097261, g.barbadense_cottongen_reftransV1_0097261 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097261
Unique Name	g.barbadense_cottongen_reftransV1_0097261
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At02	chromosome	g.barbadense_cottongen_reftransV1_0097261:1..2454 . At02:9764983..9768881 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.445e-68
Identity = 111/134 (82.84%), Postives = 125/134 (93.28%), Query Frame = -3

Query: 1691 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVS-EPTADENVKMASC 2089
             + L M+PQLEQIHGEIRD FRAL+NGFQRLDK+KDS RQSKQLEELT KMRECKRL+KEFDRE+KDEE++N PEVNKQLNDEKQSMIKELNSYVA+RKTYM+TLGNKK+ELFDMGAGVS EPTA+ENV++AS 
Sbjct:    2 ASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVSGEPTAEENVQVASS 135

HSP 2 Score: 224.942 bits (572), Expect = 2.093e-65
Identity = 116/133 (87.22%), Postives = 125/133 (93.98%), Query Frame = -3

Query:  854 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 1252
             ++MSNQELVD GMK MDETDQAIERSK+VVEQT+EVGTQTA  LKGQTDQMGR+VN LDTIQFSIKKASQLVKEIGRQVATDKCIM FLFLIVCGV+AII+VKIVNPNNKDIRDIPGLAPPA SR+LLYLR+
Sbjct:  133 ASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMGRVVNHLDTIQFSIKKASQLVKEIGRQVATDKCIMGFLFLIVCGVVAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYLRN 265

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS12_ARATH (Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 5.656e-66
Identity = 107/133 (80.45%), Postives = 123/133 (92.48%), Query Frame = -3

Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVS-EPTADENVKMAS 2089
             +EL M+P LEQIHGEIRD FRAL+NGFQRLDK+KDS+RQSKQLEEL  KMR+CKRL+KEFDRE+KD E++N P+VNKQLNDEKQSMIKELNSYVA+RKTY+NTLGNKK+ELFD GAGVS EPTA+ENV+MAS
Sbjct:    2 ASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGVSGEPTAEENVQMAS 134

HSP 2 Score: 221.476 bits (563), Expect = 3.980e-64
Identity = 114/133 (85.71%), Postives = 123/133 (92.48%), Query Frame = -3

Query:  854 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 1252
             + MSNQELVD GMK MDETDQAIERSK+VV QT+EVGTQTA  LKGQTDQMGR+VN+LDTIQFS+KKASQLVKEIGRQVATDKCIM FLFLIVCGVIAII+VKIVNPNNKDIRDIPGLAPPA SR+LLY R+
Sbjct:  133 ASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGRVVNDLDTIQFSLKKASQLVKEIGRQVATDKCIMAFLFLIVCGVIAIIIVKIVNPNNKDIRDIPGLAPPAQSRKLLYFRE 265

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: NPS11_ARATH (Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.073e-48
Identity = 98/134 (73.13%), Postives = 114/134 (85.07%), Query Frame = -3

Query:  863 MTCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIP--GLAPPAPSRRLLY 1258
            +  + MSNQEL+D G   MD+TDQAIER KK+V++TI VGT T+  LK QT+QM R+VNELD+I FS+KKAS+LVKEIGRQVATDKCIM FLFLIV GVIAII+VKIVNPNNKDIRDIP  GLAPPA +RRLL+
Sbjct:  129 LLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQMSRVVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLFLIVIGVIAIIIVKIVNPNNKDIRDIPGVGLAPPAMNRRLLW 262

HSP 2 Score: 149.828 bits (377), Expect = 1.147e-38
Identity = 75/126 (59.52%), Postives = 97/126 (76.98%), Query Frame = -3

Query: 1694 QLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLG--NKKIELFDMGAGVSEPTADENVKMAS 2065
            +L +I G+I D+FRALSNGFQ+L+K+KD+NRQS+QLEELT KMR+CK LIK+FDREIK  ES N    N+ LND +QSM+KELNSYVA++K Y + L   NK+++LFD   G  E   +ENV +AS
Sbjct:   10 ELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEHMEENVLLAS 132

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: PT148_ARATH (Probable sugar phosphate/phosphate translocator At1g48230 OS=Arabidopsis thaliana GN=At1g48230 PE=2 SV=2)

HSP 1 Score: 44.669 bits (104), Expect = 1.418e-10
Identity = 27/48 (56.25%), Postives = 30/48 (62.50%), Query Frame = 1

Query:  181 LEKPRIAVPYIQSNYRIFFSISLSALGSE------LGRTGAVTFRVAG 306
            LEKP I V  IQ N+ IFFS +L AL         +GRTGAVT RVAG
Sbjct:  214 LEKPNIDVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAG 261

HSP 2 Score: 44.2838 bits (103), Expect = 1.418e-10
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  305 AGVLKDWLPIALSSVVFSESTITGPNI 385
            AGVLKDW+ IALS+V+F ESTITG NI
Sbjct:  260 AGVLKDWILIALSTVIFPESTITGLNI 286

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Match: PT317_ARATH (Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 2.993e-10
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 2

Query:  305 AGVLKDWLPIALSSVVFSESTITGPNI 385
            AGVLKDW+ IALS+V+F ESTITG NI
Sbjct:  260 AGVLKDWILIALSTVIFPESTITGLNI 286

HSP 2 Score: 43.8986 bits (102), Expect = 2.993e-10
Identity = 28/56 (50.00%), Postives = 32/56 (57.14%), Query Frame = 1

Query:  157 WYFFLCLQLEKPRIAVPYIQSNYRIFFSISLSALGSE------LGRTGAVTFRVAG 306
            WY      LEKP + V  IQ N+ IFFS +L AL         +GRTGAVT RVAG
Sbjct:  211 WYV-----LEKPTMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAG 261

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: V4TZP2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005631mg PE=4 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.514e-71
Identity = 116/132 (87.88%), Postives = 129/132 (97.73%), Query Frame = -3

Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2089
             T+LQM+PQLEQIHGEIRD FRALSNGFQ+LDK+KDSNRQ+KQLEELTG+MRECKRLIKE DREIKDEE++NPPEVNKQLNDEKQSMIKELNSYVA+RKTYMN+LGNKK+ELFDMGAGVSEPTADENV++AS
Sbjct:    2 ATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVAS 133

HSP 2 Score: 229.565 bits (584), Expect = 3.618e-65
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = -3

Query:  830 TCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ*KGDHF 1255
              ++MSNQEL+D G KTMDETDQAI+RS+ VVEQTIEVGTQTA TLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVK+VNPNNKDIRDIPGLAPPAP+RRLL L+ P+    HF
Sbjct:  131 VASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRLLSLQAPE----HF 268

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A067G9P0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022587mg PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.194e-71
Identity = 116/132 (87.88%), Postives = 129/132 (97.73%), Query Frame = -3

Query: 1694 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2089
             T+LQM+PQLEQIHGEIRD FRALSNGFQ+LDK+KDSNRQ+KQLEELTG+MRECKRLIKE DREIKDEE++NPPEVNKQLNDEKQSMIKELNSYVA+RKTYMN+LGNKK+ELFDMGAGVSEPTADENV++AS
Sbjct:    2 ATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVAS 133

HSP 2 Score: 237.269 bits (604), Expect = 1.611e-67
Identity = 121/169 (71.60%), Postives = 130/169 (76.92%), Query Frame = -3

Query:  830 TCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVK---------------------------IVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ*KGDHF 1255
              ++MSNQEL+D G KTMDETDQAI+RS+ VVEQTIEVGTQTA TLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVK                           +VNPNNKDIRDIPGLAPPAP+RRLL L+ P    +HF
Sbjct:  131 VASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVLTHIKSQHNFQQWQFSIFCLLSMNFQVVNPNNKDIRDIPGLAPPAPARRLLSLQAP----EHF 295

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: K4DHR8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc12g098950.1 PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 3.909e-71
Identity = 116/134 (86.57%), Postives = 130/134 (97.01%), Query Frame = -3

Query: 1694 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2095
            MA  +LQMNPQ+EQIHGEIRD FRAL+NGFQ+LDK+KDSNRQSKQLEELTGKMRECKRL+KEFDREIKDEESK+PPEVNKQLNDEKQSMIKELNSYVA+RKTYM++LGNK++ELFDMGAG SEPTA+ENV+MAS
Sbjct:    1 MANLDLQMNPQMEQIHGEIRDNFRALANGFQKLDKIKDSNRQSKQLEELTGKMRECKRLVKEFDREIKDEESKSPPEVNKQLNDEKQSMIKELNSYVALRKTYMSSLGNKRVELFDMGAGGSEPTAEENVQMAS 134

HSP 2 Score: 227.639 bits (579), Expect = 1.833e-64
Identity = 118/135 (87.41%), Postives = 125/135 (92.59%), Query Frame = -3

Query:  848 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ 1252
             + MSNQEL+  G KTMDETDQAIERSK+VV QTIEVGTQTA TLKGQTDQMGR+VNELDTI FSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGV+AIIVVKIVNP+NKDIRDIPGLAPPAP+RRLLYLR  Q
Sbjct:  133 ASEMSNQELISAGNKTMDETDQAIERSKQVVHQTIEVGTQTAATLKGQTDQMGRVVNELDTIHFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPHNKDIRDIPGLAPPAPARRLLYLRPGQ 267

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A059B5A3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04121 PE=4 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.139e-70
Identity = 113/131 (86.26%), Postives = 128/131 (97.71%), Query Frame = -3

Query: 1691 ELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASC 2083
            ELQM+PQ+EQIHGEI+D FRAL+NGFQ++DK+KDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEE +NPPEVN+QLNDEKQS+IKELNSYVA+RKTYM+TLGNKK+ELFDMGAGVSEPTADENV++AS 
Sbjct:    4 ELQMSPQMEQIHGEIKDNFRALANGFQKIDKVKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEEGRNPPEVNRQLNDEKQSLIKELNSYVALRKTYMSTLGNKKLELFDMGAGVSEPTADENVQVASA 134

HSP 2 Score: 206.453 bits (524), Expect = 7.694e-57
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = -3

Query:  854 TCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRD 1255
              +AMSNQ+L+D G K MDETDQ IERSKKVVEQT+EVGTQTA TLKGQT+QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFL LIV GVIAIIVVK+VNP+NK+IRDIPGLAPPAP+RRLL L D
Sbjct:  131 VASAMSNQQLMDAGTKQMDETDQVIERSKKVVEQTVEVGTQTAVTLKGQTEQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLLLIVIGVIAIIVVKVVNPSNKNIRDIPGLAPPAPARRLLSLGD 264

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: M1A017_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004602 PE=4 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 4.872e-70
Identity = 114/134 (85.07%), Postives = 129/134 (96.27%), Query Frame = -3

Query: 1694 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2095
            MA  +LQMNPQ+EQIHGEIRD FRAL+NGFQ+LDK+KDSNRQSKQLEELTGKMRECKRL+KEFDREIKDEESK+PPEVNKQLNDEKQSMIKELNSYVA+RKTYM++LGNK++ELFDMGAG S+PTA+EN +MAS
Sbjct:    1 MANLDLQMNPQMEQIHGEIRDNFRALANGFQKLDKIKDSNRQSKQLEELTGKMRECKRLVKEFDREIKDEESKSPPEVNKQLNDEKQSMIKELNSYVALRKTYMSSLGNKRVELFDMGAGGSDPTAEENAQMAS 134

HSP 2 Score: 227.639 bits (579), Expect = 2.067e-64
Identity = 118/135 (87.41%), Postives = 125/135 (92.59%), Query Frame = -3

Query:  848 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ 1252
             + MSNQEL+  G KTMDETDQAIERSK+VV QTIEVGTQTA TLKGQTDQMGR+VNELDTI FSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGV+AIIVVKIVNP+NKDIRDIPGLAPPAP+RRLLYLR  Q
Sbjct:  133 ASEMSNQELISAGNKTMDETDQAIERSKQVVHQTIEVGTQTASTLKGQTDQMGRVVNELDTIHFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPHNKDIRDIPGLAPPAPARRLLYLRPGQ 267

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: I3SMK2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 9.424e-70
Identity = 113/131 (86.26%), Postives = 124/131 (94.66%), Query Frame = -3

Query: 1694 TELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2086
            T LQM PQLEQIHGEIRD FRAL+NGFQ+LDK+KDSNRQS QLEELTGKMRECKRLIKEFDREIKDEE +NPPEV+KQLNDEKQSMIKELNSYVA+RKTYMNT+GNKK+ELFD GAG SEPTA+ENV++AS
Sbjct:    3 TNLQMTPQLEQIHGEIRDHFRALANGFQKLDKIKDSNRQSTQLEELTGKMRECKRLIKEFDREIKDEEGRNPPEVSKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDTGAGASEPTAEENVQLAS 133

HSP 2 Score: 229.18 bits (583), Expect = 5.243e-65
Identity = 118/132 (89.39%), Postives = 128/132 (96.97%), Query Frame = -3

Query:  857 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLR 1252
             + MSNQELV+ GMKTMDETDQAIERSK+VV QT+EVGTQTAGTLKGQT+QMGRIVNELD+IQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGV+AIIVVKIVNPNNKDI+DIPGLAPPAP+RRLLY+R
Sbjct:  132 ASEMSNQELVNAGMKTMDETDQAIERSKQVVHQTVEVGTQTAGTLKGQTEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKDIKDIPGLAPPAPTRRLLYVR 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A022QC07_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011801mg PE=4 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.574e-69
Identity = 113/134 (84.33%), Postives = 126/134 (94.03%), Query Frame = -3

Query: 1694 MATTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2095
            M   ELQMNPQ+EQIHGEIRD  RAL+NGFQ+LDK+KDSNRQSKQLEEL GKMRECKRLIKEFDREIKDEES+NP EVNKQLNDEKQSMIKELNS+VA+RKTY++TLGNK++ELFDMGAG SEPTADENV++AS
Sbjct:    1 MPVQELQMNPQMEQIHGEIRDTIRALANGFQKLDKIKDSNRQSKQLEELAGKMRECKRLIKEFDREIKDEESRNPTEVNKQLNDEKQSMIKELNSFVALRKTYISTLGNKRVELFDMGAGASEPTADENVQVAS 134

HSP 2 Score: 223.016 bits (567), Expect = 8.371e-63
Identity = 118/137 (86.13%), Postives = 126/137 (91.97%), Query Frame = -3

Query:  848 TCTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAP-SRRLLYLRDPQ 1255
              + MSNQEL+  GMKTMDETDQAIERSK+VV QTIEVGT+TA TLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGV+AIIVVKIVNPNNK IRDIPGLAPPAP +RRLLY++  Q
Sbjct:  132 VASEMSNQELIHAGMKTMDETDQAIERSKQVVHQTIEVGTETATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVVAIIVVKIVNPNNKSIRDIPGLAPPAPTTRRLLYVKPAQ 268

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: V4S193_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005631mg PE=4 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.306e-69
Identity = 113/127 (88.98%), Postives = 125/127 (98.43%), Query Frame = -3

Query: 1694 MNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2074
            M+PQLEQIHGEIRD FRALSNGFQ+LDK+KDSNRQ+KQLEELTG+MRECKRLIKE DREIKDEE++NPPEVNKQLNDEKQSMIKELNSYVA+RKTYMN+LGNKK+ELFDMGAGVSEPTADENV++AS
Sbjct:    1 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVSEPTADENVQVAS 127

HSP 2 Score: 226.868 bits (577), Expect = 3.577e-64
Identity = 121/141 (85.82%), Postives = 130/141 (92.20%), Query Frame = -3

Query:  830 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYLRDPQ*KGDHF 1252
             ++MSNQEL+D G KTMDETDQAI+RS+ VVEQTIEVGTQTA TLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVK+VNPNNKDIRDIPGLAPPAP+RRLL L+ P+    HF
Sbjct:  126 ASSMSNQELIDAGKKTMDETDQAIKRSQMVVEQTIEVGTQTATTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKVVNPNNKDIRDIPGLAPPAPARRLLSLQAPE----HF 262

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: A0A068TS02_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00025595001 PE=4 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.508e-69
Identity = 112/130 (86.15%), Postives = 127/130 (97.69%), Query Frame = -3

Query: 1694 ELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMAS 2083
            +LQM+PQ+EQIHGEIRD FRAL+NGFQ+LDK+KDSNRQ+KQLEELT KMRECKRLIKEFDREIKDEES+NPPEVNKQLNDEKQSMIKELNSYVA+RKTYM++LGNK++ELFDMGAG SEPTA+ENV+MAS
Sbjct:    6 DLQMSPQMEQIHGEIRDNFRALANGFQKLDKIKDSNRQNKQLEELTAKMRECKRLIKEFDREIKDEESRNPPEVNKQLNDEKQSMIKELNSYVALRKTYMSSLGNKRVELFDMGAGASEPTAEENVQMAS 135

HSP 2 Score: 217.238 bits (552), Expect = 1.047e-60
Identity = 114/130 (87.69%), Postives = 123/130 (94.62%), Query Frame = -3

Query:  857 MSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAP-SRRLLYLR 1243
            MSNQELV+ GMKTM+ETDQ IERSK+VV QTIEVGTQTA TLKGQT+QMGR+VNELDTIQFSIKKASQLVKEIGRQVATDKCIM FLFL+VCGVIAIIVVKIVNP+NK IRDIPGLAPPAP +RRLLYL+
Sbjct:  137 MSNQELVNAGMKTMNETDQTIERSKQVVHQTIEVGTQTATTLKGQTEQMGRVVNELDTIQFSIKKASQLVKEIGRQVATDKCIMFFLFLVVCGVIAIIVVKIVNPHNKSIRDIPGLAPPAPTTRRLLYLK 266

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Match: M5XY74_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010000mg PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.537e-69
Identity = 112/133 (84.21%), Postives = 126/133 (94.74%), Query Frame = -3

Query: 1691 TTELQMNPQLEQIHGEIRDLFRALSNGFQRLDKMKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESKNPPEVNKQLNDEKQSMIKELNSYVAMRKTYMNTLGNKKIELFDMGAGVSEPTADENVKMASC 2089
             + L M+PQLEQIHGEI D FRAL+NGFQ+LDK+KDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEES+NPP+VNKQLNDEKQSMIKELNSYV +RKT+MN+LGNK++ELFDMGAGVSEPTAD+NV+MAS 
Sbjct:    2 ASNLPMSPQLEQIHGEIHDNFRALANGFQKLDKIKDSNRQSKQLEELTGKMRECKRLIKEFDREIKDEESRNPPDVNKQLNDEKQSMIKELNSYVQLRKTFMNSLGNKRVELFDMGAGVSEPTADDNVQMASA 134

HSP 2 Score: 197.208 bits (500), Expect = 1.470e-53
Identity = 114/131 (87.02%), Postives = 120/131 (91.60%), Query Frame = -3

Query:  860 CTAMSNQELVDHGMKTMDETDQAIERSKKVVEQTIEVGTQTAGTLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKDIRDIPGLAPPAPSRRLLYL 1252
             +AMSNQEL+D G KTMDETDQ IERSKKVVEQTIEVGTQTA TLKGQT+QMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFL LIV GVIAIIVVKIV+P NK+IR IPGLAPPA +RRLL L
Sbjct:  132 ASAMSNQELIDSGTKTMDETDQVIERSKKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLLLIVVGVIAIIVVKIVHPGNKNIRVIPGLAPPA-ARRLLSL 261

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
NPS13_ARATH	2.445e-68	82.84	Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NP...	[more]
NPS12_ARATH	5.656e-66	80.45	Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NP...	[more]
NPS11_ARATH	1.073e-48	73.13	Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NP...	[more]
PT148_ARATH	1.418e-10	56.25	Probable sugar phosphate/phosphate translocator At...	[more]
PT317_ARATH	2.993e-10	77.78	Probable sugar phosphate/phosphate translocator At...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097261 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V4TZP2_9ROSI	1.514e-71	87.88	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067G9P0_CITSI	2.194e-71	87.88	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
K4DHR8_SOLLC	3.909e-71	86.57	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]
A0A059B5A3_EUCGR	4.139e-70	86.26	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
M1A017_SOLTU	4.872e-70	85.07	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
I3SMK2_LOTJA	9.424e-70	86.26	Uncharacterized protein OS=Lotus japonicus PE=2 SV...	[more]
A0A022QC07_ERYGU	2.574e-69	84.33	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
V4S193_9ROSI	3.306e-69	88.98	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A068TS02_COFCA	5.508e-69	86.15	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
M5XY74_PRUPE	6.537e-69	84.21	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000727	Target SNARE coiled-coil homology domain	SMART	SM00397	tSNARE_6	coord: 22..89 e-value: 1.8E-6 score: 37.5
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 27..89 score: 9.707
None	No IPR available	GENE3D	1.20.5.110		coord: 18..90 e-value: 1.3E-17 score: 62.9
None	No IPR available	PANTHER	PTHR21230:SF27	NOVEL PLANT SNARE 11	coord: 17..135
None	No IPR available	PANTHER	PTHR21230	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	coord: 17..135
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..98
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 120..148
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 99..119
None	No IPR available	SUPERFAMILY	58038	SNARE fusion complex	coord: 17..90
None	No IPR available	TMHMM	TMhelix		coord: 99..116
IPR005606	Sec20	PFAM	PF03908	Sec20	coord: 35..113 e-value: 5.4E-7 score: 29.3

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097261 ID=g.barbadense_cottongen_reftransV1_0097261; Name=g.barbadense_cottongen_reftransV1_0097261; organism=Gossypium barbadense; type=contig; length=2454bp
CTTTTTGAAACATGAAAAAAAGATTTAAAAAAAATAAAAACACAAATGCC
CAACTCGCTGGCAAAATTTAATGTACGTAGATCTTATTATATTATATATT
AAGTGCAATATACCGGTGGCTGAAGGGTCAATGTTTGATCTCCCCTTTTT
GCAGTCTGGTACTTCTTTTTGTGCCTTCAGCTGGAGAAGCCTAGGATTGC
AGTTCCATATATACAATCGAATTACCGAATCTTTTTCTCCATTTCTCTTT
CTGCATTGGGCTCTGAACTTGGAAGAACTGGAGCTGTCACCTTCAGGGTC
GCTGGCTGGCGTTCTAAAGGACTGGTTACCGATTGCCCTTTCCTCTGTTG
TTTTTTCGGAGTCTACAATAACTGGGCCCAATATTTGTCATTCACAAATG
GTCACAGCAAGTATGTATTATGATGTGTTCATTAAGTTGGCAGCTGAGCA
CTAGTTTTATGATAAGCTCCAGTTCTGGTTCTAGGCTAACCCGGTCCAGA
TACCTATTTTTGGTTGAGATGAGCTTGGCCACAAAATTCATACATGTATA
TCCCCCAAGGACATTTGAAAATTATATGGAATTCACTTCAGAGATGACTT
ATTTCTAACCCTACAATAATCTTCAAAGTTCATTCAAATAATTCAACTGC
TCCCATAAAATTTACAAAGACAACAAACACCACCAACCGTATATGCACAT
CTCAGGCAAGAATCAATCATATAAAATCGAAAAGCGAAAAACCATCACAT
CCCTCAAATGCCAACTTCCCAATACTCCCCACTCCTGTCTCTATTCAAGC
ATAAGCAGAACAAAACCACTCACTTATTTGAAATGATCACCTTTTTACTG
CGGGTCCCTTAGATATAACAATCTCCTCGAAGGTGCTGGAGGTGCCAATC
CTGGAATATCTCTGATATCTTTGTTGTTCGGATTCACAATCTTCACAACT
ATGATGGCTATAACACCGCATACGATAAGAAAAAGAAATAGCATGATGCA
TTTATCAGTGGCTACCTGCCTACCAATCTCCTTCACCAGCTGGGAGGCCT
TCTTAATTGAAAACTGAATTGTATCCAGCTCATTTACAATACGGCCCATT
TGATCAGTTTGTCCTTTTAGAGTACCAGCAGTTTGAGTTCCTACTTCAAT
TGTTTGTTCAACAACCTTTTTTGAGCGTTCAATGGCCTGATCAGTCTCAT
CCATTGTCTTCATCCCATGATCAACAAGCTCTTGGTTTGACATTGCTGTG
CAAGTCATGCAATAGTAAGATAGTTTGATGAAAAAGTACAGTTAACCTCT
ACGCCGAGATTCTGTTGTTTTAAGTTCATAACTTTCAGTAAAGATAATGG
ACTAGATCAATTTTCTTGTAGCATCCAAAGTCGAGAATGCTTAGCCTTGT
TCCCAAACTGTCCAACATTCAAAGAAGACTTCACATCCCAGTTTTCTAGG
CAGTAGTTGATTGAAAATGCATATAGCATGACAATATATAAAATCAACTA
AATCGGCAAAATCATAATTGATACAAGATACTTTGGTATTAGAATGTATT
TAAATACATCAAATTAAAAGAAAAAACCAATGGCAGGTAATGAAAGCATA
CCCATCATTTTCAGAACTAAGAGTCTTTGATCCAAAGTAAATGTTCTATA
TAAATCAAACTCAATGGAGGGTTAGAAGAAGTAAGATCTTACATGATGCC
ATTTTAACATTTTCATCAGCTGTAGGTTCACTGACTCCAGCTCCCATATC
AAAGAGTTCAATTTTCTTGTTACCAAGGGTATTCATGTATGTTTTCCTCA
TAGCTACATACGAATTCAGTTCTTTGATCATAGACTGCTTCTCATCATTG
AGTTGCTTGTTCACTTCGGGAGGATTTTTGCTTTCCTCATCTTTAATTTC
ACGATCAAACTCCTTGATTAATCTTTTACATTCCCTCATCTTGCCAGTAA
GCTCTTCCAGCTGTTTGCTTTGCCTATTGGAATCTTTCATCTTATCCAGT
CTCTGGAAGCCATTTGAAAGAGCACGGAAAAGATCGCGGATTTCGCCATG
GATCTGCTCCAACTGAGGATTCATCTGCAACTCCGTGGTGGCCATCTAAT
CCGCCGATTGAAGATTTTCAATTTCCCAAAAGTATTTCAGTTCTCATTCA
AAACCCCCCATAGTACAAAATTCATAAAAAAAAAAAAACATAAACACTCA
CTCCCACGCTGGGAATTTTTTTTTATTTTTTTCCCAAAATTTTCTCTATT
TTTAGAAAAAAAAAAGGGGAGAAATTTGGAAAAATGAAATTGAAAATTGA
AGGGTTCTAGAGAGAGAGAGAGAAAACAAAAGTTAGGAGAAAAGCAACAA
AGTGTGGAATGGAATTAAACTGTAACACAGAGAGAGATAACAAGAGAATC
GCTGTCTCTGTGTGTCTTTTATTATTTTATTGTTATTAGATGATTTTTAT
TTTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000727	T_SNARE_dom
IPR005606	Sec20

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.barbadense_cottongen_reftransV1_0097261, g.barbadense_cottongen_reftransV1_0097261 (contig) Gossypium barbadense

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