g.barbadense_cottongen_reftransV1_0097259, g.barbadense_cottongen_reftransV1_0097259 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097259 vs. ExPASy TrEMBL
Match: V4UJS5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026196mg PE=4 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.941e-32 Identity = 83/158 (52.53%), Postives = 108/158 (68.35%), Query Frame = 3 Query: 51 MEELRKLEQLHTTLTFMQSHNFVRSSTLDSN---RFIANLVLLLLQPCGELNLDMKFRLLSEYLPKISVSFLEEASQWVRFETDERDYQEVNDPSGKKDCLPLQINHEEVAMVGLEAMERANSTLEDFCRSYFMFHGVDIDSPLMIFKYFPVLAFTES 515 MEELRKLEQ+ TL+FMQS V SS+ +++ RF+ANL+LLL+QP G+L++ K L+ EY+PK+S SFLEEA R QE + + + + EV +VGL+ M+RANSTLEDFCRSYFMFHG+D + P IFKY PVL+FTES Sbjct: 1 MEELRKLEQVQETLSFMQSRGVVVSSSNNNDDSNRFLANLILLLVQPSGKLDMTEKCSLILEYVPKLSASFLEEALP--------RLTQEGTQVNCFRSGFVNENDCGEV-LVGLDGMQRANSTLEDFCRSYFMFHGMDANHPQAIFKYLPVLSFTES 149 HSP 2 Score: 105.916 bits (263), Expect = 2.768e-21 Identity = 51/94 (54.26%), Postives = 67/94 (71.28%), Query Frame = 1 Query: 943 YNMQLDGLNEKILSIPTEGDASLAKEFEKMNYQCWAGTFANMLEKDPFRPLLNVLELRGLLTDRIREEFRSGEEYWALERKLCCALTHKMEVDI 1224 Y QLD LNEKI+++PT+G + F++ Y+ ++L+ DPFRPL+++LE GLLT+RI EEFR GEEYWALERKLCCAL K EV + Sbjct: 150 YIYQLDSLNEKIVNMPTDGVTVSERGFQEKAYEKQVSKLIDILKSDPFRPLVSLLERHGLLTERIVEEFRCGEEYWALERKLCCALMTKKEVHM 243
BLAST of g.barbadense_cottongen_reftransV1_0097259 vs. ExPASy TrEMBL
Match: K7LS54_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 6.894e-32 Identity = 80/166 (48.19%), Postives = 108/166 (65.06%), Query Frame = 3 Query: 51 MEELRKLEQLHTTLTFMQSHNFVRSSTLD--SNRFIANLVLLLLQPCGELNLDMKFRLLSEYLPKISVSFLEEASQWVRFETDERDYQEVNDP---------SGKKDCLPLQINHEEVAMVGLEAMERANSTLEDFCRSYFMFHGVDIDSPLMIFKYFPVLAFTES 515 MEELRKLE++H+ L FM+S S LD SNRF+AN +L L++P G+L ++ K LLS+ +P +S SFLE+A Q +T +R+ + K+ LQ +E AMVGL++M+ ANSTLEDFCRSYFMFHG+D+ P IFKY P+L+FTES Sbjct: 1 MEELRKLEKVHSMLEFMESRGV---SNLDHHSNRFLANFILFLIEPSGDLAINDKCSLLSQLIPTLSSSFLEDAYQH-HLDTTKRENSGFQQSLVENALLGCNQTKEYSSLQNCNENTAMVGLDSMQMANSTLEDFCRSYFMFHGLDVSKPQSIFKYLPILSFTES 162 HSP 2 Score: 86.6557 bits (213), Expect = 3.167e-14 Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 1 Query: 943 YNMQLDGLNEKILSIPTEGDASLAKEFEKMNYQCWAGTFANMLEKDPFRPLLNVLELRGLLTDRIREEFRSGEEYWALERKLCCALTHKMEV 1218 Y QLD +NEK+L P G EK +Q + DP RPL +LE +GLLT+RIREE R GEEYWALERKLC ALT+K ++ Sbjct: 163 YIYQLDKMNEKLLQTPYNGKCVFG---EKDEWQRETKLLVSCFSNDPVRPLATILEHKGLLTERIREELRLGEEYWALERKLCSALTNKEKI 251 HSP 3 Score: 48.1358 bits (113), Expect = 1.804e-10 Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 2 Query: 3254 TIQAKNITDAEERYDNLLKTLDPQLSSKYQRRCEEAAKEG 3373 ++ AK I +AE++Y +L K+LDP LS YQ+RC EA KEG Sbjct: 386 SMLAKCIGEAEDKYASLQKSLDPHLSLSYQKRCAEATKEG 425 HSP 4 Score: 47.7506 bits (112), Expect = 1.804e-10 Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 1 Query: 3460 GGKVSGHPLGTWSIPPVIVNEDLYR 3534 GGKVS HPLGTWSIP VI +E+LYR Sbjct: 425 GGKVSDHPLGTWSIPTVIQDEELYR 449
BLAST of g.barbadense_cottongen_reftransV1_0097259 vs. ExPASy TrEMBL
Match: F4KGT1_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At5g10320 PE=4 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.900e-32 Identity = 86/170 (50.59%), Postives = 112/170 (65.88%), Query Frame = 3 Query: 51 MEELRKLEQLHTTLTFMQSHNFVRSSTLDSN---RFIANLVLLLLQPCGELNLDMKFRLLSEYLPKISVSFLEEASQWVRFETDERDYQEVNDPS-GKKDCLPLQI----------NHEEV-AMVGLEAMERANSTLEDFCRSYFMFHGVDIDSPLMIFKYFPVLAFTES 515 MEEL++LE+ T ++ + H + SS+ DS RF++NLVL L+QPCGEL+LD K LLSE+LPKIS FLEE S+ E D+ +N S + C+ + H+EV AMVGL+AM+RANSTLEDF RSYFMFH +DI+ P IF+Y PVL+FTES Sbjct: 1 MEELKRLEKFQTVVSSITCHGLLSSSSSDSASSSRFLSNLVLFLVQPCGELDLDSKLGLLSEFLPKISGPFLEEISR--SLELDDEATTPLNTISECQNSCVKRSVMDNVDPYMSQKHQEVVAMVGLDAMKRANSTLEDFSRSYFMFHRLDINEPQSIFRYLPVLSFTES 168 HSP 2 Score: 58.5362 bits (140), Expect = 1.370e-12 Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 2 Query: 3263 AKNITDAEERYDNLLKTLDPQLSSKYQRRCEEAAKEG 3373 AK I++AEE+Y+ ++K+LDP LSS YQRRCEEA KEG Sbjct: 338 AKRISEAEEKYEEIMKSLDPHLSSNYQRRCEEATKEG 374 HSP 3 Score: 44.669 bits (104), Expect = 1.370e-12 Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 1 Query: 3460 GGKVSGHPLGTWSIPPVIVNEDLYRS 3537 GGK+SGH LGTW+IP VI +E+ YRS Sbjct: 374 GGKISGHSLGTWNIPAVISDEEAYRS 399 HSP 4 Score: 75.0998 bits (183), Expect = 1.140e-10 Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 1 Query: 943 YNMQLDGLNEKILSIPTEGDASLAKEFEKMNYQCWAGTFANMLEKDPFRPLLNVLELRGLLTDRIREEFRSGEEYWALERKLCCALTHKMEV 1218 Y Q+D LNEKI+S G + + W + E +P +PL ++LE LLT+R+++EF SGEEYWALERKLC AL++K ++ Sbjct: 169 YIYQMDALNEKIVSESACGSQVI------YSSHGWNAESRVLFETNPLKPLGDLLEREALLTNRVQQEFNSGEEYWALERKLCHALSNKNKI 254
BLAST of g.barbadense_cottongen_reftransV1_0097259 vs. ExPASy TrEMBL
Match: Q6NMB2_ARATH (At5g10320 OS=Arabidopsis thaliana GN=At5g10320 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 1.141e-31 Identity = 86/170 (50.59%), Postives = 110/170 (64.71%), Query Frame = 3 Query: 51 MEELRKLEQLHTTLTFMQSHNFVRSSTLDSN---RFIANLVLLLLQPCGELNLDMKFRLLSEYLPKISVSFLEEASQWVRFETDERDYQEVNDPS-GKKDCLPL-----------QINHEEVAMVGLEAMERANSTLEDFCRSYFMFHGVDIDSPLMIFKYFPVLAFTES 515 MEEL++LE+ T ++ + H + SS+ DS RF++NLVL L+QPCGEL+LD K LLSE+LPKIS FLEE S+ E D+ +N S + C+ Q E VAMVGL+AM+RANSTLEDF RSYFMFH +DI+ P IF+Y PVL+FTES Sbjct: 1 MEELKRLEKFQTVVSSITCHGLLSSSSSDSASSSRFLSNLVLFLVQPCGELDLDSKLGLLSEFLPKISGPFLEEISR--SLELDDEATTPLNTISECQNSCVKRSVMDNVDPYMSQKRQEVVAMVGLDAMKRANSTLEDFSRSYFMFHRLDINEPQSIFRYLPVLSFTES 168 HSP 2 Score: 57.3806 bits (137), Expect = 3.003e-12 Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 2 Query: 3263 AKNITDAEERYDNLLKTLDPQLSSKYQRRCEEAAKEG 3373 AK I++AEE+Y+ ++K LDP LSS YQRRCEEA KEG Sbjct: 338 AKRISEAEEKYEEIMKYLDPHLSSNYQRRCEEATKEG 374 HSP 3 Score: 44.669 bits (104), Expect = 3.003e-12 Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 1 Query: 3460 GGKVSGHPLGTWSIPPVIVNEDLYRS 3537 GGK+SGH LGTW+IP VI +E+ YRS Sbjct: 374 GGKISGHSLGTWNIPAVISDEEAYRS 399 HSP 4 Score: 75.0998 bits (183), Expect = 1.235e-10 Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 1 Query: 943 YNMQLDGLNEKILSIPTEGDASLAKEFEKMNYQCWAGTFANMLEKDPFRPLLNVLELRGLLTDRIREEFRSGEEYWALERKLCCALTHKMEV 1218 Y Q+D LNEKI+S G + W + E +P +PL ++LE LLT+R+++EF SGEEYWALERKLC AL++K ++ Sbjct: 169 YIYQMDALNEKIVSESACGSQVIYSS------HGWNAESRVLFETNPLKPLGDLLEREALLTNRVQQEFNSGEEYWALERKLCHALSNKNKI 254
BLAST of g.barbadense_cottongen_reftransV1_0097259 vs. ExPASy TrEMBL
Match: V4SL59_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026196mg PE=4 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.517e-31 Identity = 83/158 (52.53%), Postives = 108/158 (68.35%), Query Frame = 3 Query: 51 MEELRKLEQLHTTLTFMQSHNFVRSSTLDSN---RFIANLVLLLLQPCGELNLDMKFRLLSEYLPKISVSFLEEASQWVRFETDERDYQEVNDPSGKKDCLPLQINHEEVAMVGLEAMERANSTLEDFCRSYFMFHGVDIDSPLMIFKYFPVLAFTES 515 MEELRKLEQ+ TL+FMQS V SS+ +++ RF+ANL+LLL+QP G+L++ K L+ EY+PK+S SFLEEA R QE + + + + EV +VGL+ M+RANSTLEDFCRSYFMFHG+D + P IFKY PVL+FTES Sbjct: 1 MEELRKLEQVQETLSFMQSRGVVVSSSNNNDDSNRFLANLILLLVQPSGKLDMTEKCSLILEYVPKLSASFLEEALP--------RLTQEGTQVNCFRSGFVNENDCGEV-LVGLDGMQRANSTLEDFCRSYFMFHGMDANHPQAIFKYLPVLSFTES 149 HSP 2 Score: 106.686 bits (265), Expect = 2.866e-21 Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 1 Query: 943 YNMQLDGLNEKILSIPTEGDASLAKEFEKMNYQCWAGTFANMLEKDPFRPLLNVLELRGLLTDRIREEFRSGEEYWALERKLCCALTHKMEVDI 1224 Y QLD LNEKI+++PT+G + F++ Y+ ++L+ DPFRPL+++LE GLLT+RI EEFR GEEYWALERKLCCAL K E+ + Sbjct: 150 YIYQLDSLNEKIVNMPTDGVTVSERGFQEKAYEKQVSKLIDILKSDPFRPLVSLLERHGLLTERIVEEFRCGEEYWALERKLCCALMTKKEISV 243 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097259 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0097259 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097259 ID=g.barbadense_cottongen_reftransV1_0097259; Name=g.barbadense_cottongen_reftransV1_0097259; organism=Gossypium barbadense; type=contig; length=4005bpback to top |