g.barbadense_cottongen_reftransV1_0097170, g.barbadense_cottongen_reftransV1_0097170 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097170
Unique Name	g.barbadense_cottongen_reftransV1_0097170
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3431

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_PYRAB (Inorganic pyrophosphatase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ppa PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 4.052e-16
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            ++DR+LYS   YP +YG IPRT  +D+DP D +VIM+
Sbjct:   41 KLDRVLYSPFFYPVDYGIIPRTWYDDDDPFDIMVIMR 77

HSP 2 Score: 40.817 bits (94), Expect = 4.052e-16
Identity = 28/90 (31.11%), Postives = 38/90 (42.22%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFE 1106
            EP  P   + AR +GL  MID                              G+KD K++AV  +DP +K + DI D+P   L EI  FF+
Sbjct:   78 EPTYPLTIIEARPIGLFKMIDS-----------------------------GDKDYKVLAVPVEDPYFKDWKDIDDVPKAFLDEIAHFFK 138

HSP 3 Score: 38.5058 bits (88), Expect = 4.052e-16
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  462 GCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            G  +P     ++EI KGS+ KYELDKKTG++K+
Sbjct:   10 GPNVPEVVYALIEIPKGSRNKYELDKKTGLLKL 42

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_NOSS1 (Inorganic pyrophosphatase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ppa PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.659e-16
Identity = 30/89 (33.71%), Postives = 39/89 (43.82%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFF 1103
            EP  PGC + AR +G + MID                              G++D+KI+AV   DP Y H   + D+ PHRL EI  FF
Sbjct:   76 EPTFPGCVIAARPIGFLEMIDG-----------------------------GDRDEKILAVPDKDPRYAHVKSLNDVAPHRLDEIAEFF 135

HSP 2 Score: 53.5286 bits (127), Expect = 4.659e-16
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1

Query:  583 IYLAG*GKAFPFLVLMSLNESQVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIM 753
            I +AG G    +     L    +DR+LYSSV YP++YGF+P TL +D DP+D +VI+
Sbjct:   19 IEIAG-GSQNKYEFDKDLEAFALDRVLYSSVKYPYDYGFVPNTLADDGDPLDGMVII 74

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_THEKO (Inorganic pyrophosphatase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=ppa PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 1.392e-15
Identity = 19/37 (51.35%), Postives = 27/37 (72.97%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            ++DR+LYS   YP +YG IP+T  +D DP D +VIM+
Sbjct:   41 KLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMR 77

HSP 2 Score: 41.5874 bits (96), Expect = 1.392e-15
Identity = 28/90 (31.11%), Postives = 39/90 (43.33%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFE 1106
            EPV P   + AR +G+M M D                              G+KD K++AV  +DP +K + DI D+P   L EI  FF+
Sbjct:   78 EPVYPLTIVEARPIGIMKMEDS-----------------------------GDKDWKVLAVPVEDPYFKDWKDIDDVPKAFLDEIAHFFQ 138

HSP 3 Score: 38.1206 bits (87), Expect = 1.392e-15
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  462 GCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            G  +P     ++EI KGS+ KYELDKKTG++K+
Sbjct:   10 GPEVPEVVYALIEIPKGSRNKYELDKKTGLLKL 42

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_PYRHO (Inorganic pyrophosphatase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ppa PE=1 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.703e-15
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            ++DR+LY+   YP +YG IPRT  ED DP D +VIM+
Sbjct:   41 KLDRVLYTPFHYPVDYGIIPRTWYEDGDPFDIMVIMR 77

HSP 2 Score: 40.817 bits (94), Expect = 1.703e-15
Identity = 28/90 (31.11%), Postives = 38/90 (42.22%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFE 1106
            EP  P   + AR +GL  MID                              G+KD K++AV  +DP +K + DI D+P   L EI  FF+
Sbjct:   78 EPTYPLTIIEARPIGLFKMIDS-----------------------------GDKDYKVLAVPVEDPYFKDWKDISDVPKAFLDEIAHFFK 138

HSP 3 Score: 36.965 bits (84), Expect = 1.703e-15
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  462 GCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            G  +P     ++EI KGS+ KYELDK+TG++K+
Sbjct:   10 GPNVPEVVYALIEIPKGSRNKYELDKETGLLKL 42

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_UREPA (Inorganic pyrophosphatase OS=Ureaplasma parvum serovar 3 (strain ATCC 700970) GN=ppa PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 2.348e-14
Identity = 30/87 (34.48%), Postives = 38/87 (43.68%), Query Frame = 3

Query:  849 PGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFED 1109
            PG  + AR LG M MID                              GE D K++AV   DP YKH  + KD+P H L E++ FFE+
Sbjct:   68 PGIKVPARVLGAMKMID-----------------------------GGETDTKLLAVIDVDPRYKHINNFKDIPLHWLAEVQDFFEN 125

HSP 2 Score: 47.7506 bits (112), Expect = 2.348e-14
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 1

Query:  631 SLNESQVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVI 750
            +  E  VDRIL+ S+VYPHNYGF+   L  D D +D LV 
Sbjct:   22 ATKEIMVDRILHGSMVYPHNYGFLKEALDYDGDELDVLVF 61

HSP 3 Score: 24.6386 bits (52), Expect = 2.348e-14
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
             +EI K S +KYE D+ T  I V
Sbjct:    6 TIEIPKNSNIKYEYDRATKEIMV 28

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A0D2MYL7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G149100 PE=4 SV=1)

HSP 1 Score: 648.662 bits (1672), Expect = 0.000e+0
Identity = 480/485 (98.97%), Postives = 481/485 (99.18%), Query Frame = -3

Query: 1762 PLHFANGGSSSRSYHAHIPKNTATIFXXXXXXXXXXSAHFPSLSVFPNIDSNRLRASAFNKGRKXXXXXTLFEMGGSXXXXXXXXXXXXXXXXXXXXXXXXEAMFLPLGKMKKWLENKPRGFGEGKVYDTSIEEKLLEEIEQSRQAQTXXXXXXXXXXXXPGSKKGDQQNKKAESVPSGIRVRVGNLPKKKNIHRDLKAAFDGVSGIINISPAVSGNKKTKDPVCKGFAFVEFKHEVDAIRFVQIFSGHNLTFGRIQKQIKCEMINSLSHSPAHEELWDNGSITDEVAISHFVDGPNANFDMKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEGRNNLNAISEAEASTADIMEPRFKRAAADLIALTPLERIRALEQKLLARGKQQRVPKEQKGQKLERFGSXXXXXXXXXXXXXXXXXXXXXXKLDIPGSAKRLKIKEKAQLTGAFSKYGLKTPSNSKEES 3216
            PLHFANGGSSSRSYHAHIPKNTATIFLSSSLL LSQSAHFPSLSVFPNIDSNRLRASAFNKGRKGGGGTTLFEM GSDEDNDGDEFIDFDDEFD DDEDGDEAMFLPLGKMKKWLENKPRGFGEGKVYDTSIEEKLLEEIEQSRQAQTVNVNNLKNNPVKPGSKKGDQQNKKAESVPSGIRVRVGNLPKKKNIHRDLKAAFDGVSGIINISPAVSGNKKTKDPVCKGFAFVEFKHEVDAIRFVQIFSGHNLTFGRIQKQIKCEMINSLSHSPAHEELWDNGSIT+EVAISHFVDGPNANFDMKNSSSDLSLESVSDEVDDHDDELVSDEFDDLDDELVSDEFDDQDDEFDEVEVGEGRNNLNAISEAEASTADIMEPRFKRAAADLIALTPLERIRALEQKLLARGKQQRVPKEQKGQKLER GSNNKKKVVAKQNQQKVTKEQKVQKLDIPGSAKRLKIKEKAQLTGAFSKYGLKTPSNSKEES
Sbjct:   19 PLHFANGGSSSRSYHAHIPKNTATIFLSSSLLPLSQSAHFPSLSVFPNIDSNRLRASAFNKGRKGGGGTTLFEMDGSDEDNDGDEFIDFDDEFDADDEDGDEAMFLPLGKMKKWLENKPRGFGEGKVYDTSIEEKLLEEIEQSRQAQTVNVNNLKNNPVKPGSKKGDQQNKKAESVPSGIRVRVGNLPKKKNIHRDLKAAFDGVSGIINISPAVSGNKKTKDPVCKGFAFVEFKHEVDAIRFVQIFSGHNLTFGRIQKQIKCEMINSLSHSPAHEELWDNGSITEEVAISHFVDGPNANFDMKNSSSDLSLESVSDEVDDHDDELVSDEFDDLDDELVSDEFDDQDDEFDEVEVGEGRNNLNAISEAEASTADIMEPRFKRAAADLIALTPLERIRALEQKLLARGKQQRVPKEQKGQKLERVGSNNKKKVVAKQNQQKVTKEQKVQKLDIPGSAKRLKIKEKAQLTGAFSKYGLKTPSNSKEES 503

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A0B0NZJ6_GOSAR (Eukaryotic translation initiation factor 3 subunit G OS=Gossypium arboreum GN=F383_22655 PE=4 SV=1)

HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 456/483 (94.41%), Postives = 462/483 (95.65%), Query Frame = -3

Query: 1762 HFANGGSSSRSYHAHIPKNTATIFXXXXXXXXXXSAHFPSLSVFPNIDSNRLRASAFNKGRKXXXXXTLFEMGGSXXXXXXXXXXXXXXXXXXXXXXXXEAMFLPLGKMKKWLENKPRGFGEGKVYDTSIEEKLLEEIEQSRQAQTXXXXXXXXXXXXPGSKKGDQQNKKAESVPSGIRVRVGNLPKKKNIHRDLKAAFDGVSGIINISPAVSGNKKTKDPVCKGFAFVEFKHEVDAIRFVQIFSGHNLTFGRIQKQIKCEMINSLSHSPAHEELWDNGSITDEVAISHFVDGPNANFDMKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEGRNNLNAISEAEASTADIMEPRFKRAAADLIALTPLERIRALEQKLLARGKQQRVPKEQKGQKLERFGSXXXXXXXXXXXXXXXXXXXXXXKLDIPGSAKRLKIKEKAQLTGAFSKYGLKTPSNSKEES 3210
            HFANGGSSSRS H  I +NTATIFL+SSLL LSQSAHFPSLSVFPNID NRLRASAFNKGRKG GGTTLFEM GSDED+DGDEFIDFDDEFD D EDGDEAMFLPLGKMKKWLENKPRGFGEGKVYDTSIEEKLLEEIEQSRQAQTVNVNNLKNNPVKPGSKK DQQNK+AESV SGIRVRVGNLPKKKNIHRDLKAAFDGVSGIINISPAVSGNKKTKDPVCKGFAFVEFKHEVDAIRFVQ FSGHNLTFGRIQKQIKCEMINSLSHSPAHEELWDNGSITDEVAISHFVDG N NFDMKNSSSD+SLESVSDEVD+HDDELVSDE DDLDDELVSDEFDDQDDEFDEVEVGEGRNNLNAISEAEASTADIMEPRFKRAAAD IA TPLERIRALEQKLLARGKQQRVPKEQKGQKLER  SNNKKKVVAKQNQQKVTKEQKVQKLDIPGSAKRLKIKEKAQLTG FSKYGLKTPSNSKEES
Sbjct:   21 HFANGGSSSRSSHVRISENTATIFLASSLLPLSQSAHFPSLSVFPNIDFNRLRASAFNKGRKGSGGTTLFEMDGSDEDDDGDEFIDFDDEFDADGEDGDEAMFLPLGKMKKWLENKPRGFGEGKVYDTSIEEKLLEEIEQSRQAQTVNVNNLKNNPVKPGSKKDDQQNKEAESVLSGIRVRVGNLPKKKNIHRDLKAAFDGVSGIINISPAVSGNKKTKDPVCKGFAFVEFKHEVDAIRFVQNFSGHNLTFGRIQKQIKCEMINSLSHSPAHEELWDNGSITDEVAISHFVDGLNPNFDMKNSSSDISLESVSDEVDNHDDELVSDELDDLDDELVSDEFDDQDDEFDEVEVGEGRNNLNAISEAEASTADIMEPRFKRAAADSIASTPLERIRALEQKLLARGKQQRVPKEQKGQKLERVRSNNKKKVVAKQNQQKVTKEQKVQKLDIPGSAKRLKIKEKAQLTGVFSKYGLKTPSNSKEES 503

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A061E6U3_THECC (RNA-binding family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_010219 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 1.092e-130
Identity = 303/496 (61.09%), Postives = 336/496 (67.74%), Query Frame = -3

Query: 1762 FTPLHFANGGSSSRSYHAHIPKNTA---------TIFXXXXXXXXXXSAHFPSLSVFPNIDSNRLRASAFNKGRKXXXXXTLFEMGGSXXXXXXXXXXXXXXXXXXXXXXXXEAMFLPLGKMKKWLENKPRGFGEGKVYDTSIEEKLLEEIEQSRQAQTXXXXXXXXXXXXPGSKKGDQQNKKAESVPSGIRVRVGNLPKKKNIHRDLKAAFDGVSGIINISPAVSGNKKTKDPVCKGFAFVEFKHEVDAIRFVQIFSGHNLTFGRIQKQIKCEMINSLSHSPAHEELWDNGSITDEVAISHFVDGPNANFDMKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEGRNNLNAISEAEASTADIMEPRFKRAAADLIALTPLERIRALEQKLLARGKQQRVPKEQKGQKLERFGSXXXXXXXXXXXXXXXXXXXXXXKLDIPGSAKRLKIKEKAQLTGAFSKYGLKTPSNSKEES 3222
            FT LH  +G ++    H+   KNTA          IF SS   L  Q  H   LSVFPN DSN+LRASAFNKG+ GG    L+EM  SD + + + F   D     DD+  +  MFLP GKMKKWLENKPRGFGEGKVYDTSIE+KLLEEIEQSRQAQ VNVNNLKNNPVK GSKK       AE VPSG+RVRV NLPKKKNIHRDLKAAF+GVSGIINISPAVSGNKKTKDPVCKGFAFV+FK EVDA RFVQ FSGHN+ FGRIQKQIKCEM+NS+S +PAHEEL D  SIT EVA+    D P+ +FDM                                        DDQD+EFD VE GEGR+NLN ISE+  S  D         AAD ++   LERIRALEQKL+ARGKQQ VPKEQKGQKLER     +KK +AK  Q+K  KEQ+VQKLDIPGSAKRLKIKEKA LTG FSKYGLKT    KEES
Sbjct:   18 FTSLHHGSGSAN----HSIKQKNTAFSLSFPFRRAIFASSLPPLSQQ-THLTFLSVFPNKDSNKLRASAFNKGKNGGTT--LYEMDRSDGEEEDEFFDFDDGLDGGDDDCDE-GMFLPFGKMKKWLENKPRGFGEGKVYDTSIEDKLLEEIEQSRQAQVVNVNNLKNNPVKSGSKK------VAEVVPSGVRVRVVNLPKKKNIHRDLKAAFNGVSGIINISPAVSGNKKTKDPVCKGFAFVDFKREVDATRFVQNFSGHNIMFGRIQKQIKCEMMNSVSQNPAHEELSDKDSITPEVAVPGLGDCPDTDFDMN-------------------------------ISCSDLSLDDQDEEFDRVEQGEGRDNLNVISESGPSNGD-------ERAADSMSSNRLERIRALEQKLIARGKQQGVPKEQKGQKLERI-RGIEKKPLAKGKQKKDPKEQQVQKLDIPGSAKRLKIKEKALLTGVFSKYGLKTALTWKEES 460

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A0D2PC93_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G149200 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.119e-78
Identity = 90/161 (55.90%), Postives = 92/161 (57.14%), Query Frame = 3

Query:  819 CHMLE*EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            C ++  EPVLPGCFLRARALGLMPMIDQ                             GEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFED                                     KKNENKEVAVNDILPVNTAIEAIQYSM
Sbjct:   98 CLVIMQEPVLPGCFLRARALGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDY------------------------------------KKNENKEVAVNDILPVNTAIEAIQYSM 193

HSP 2 Score: 81.2629 bits (199), Expect = 2.119e-78
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ
Sbjct:   67 KVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 103

HSP 3 Score: 80.1073 bits (196), Expect = 2.119e-78
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  232 MSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIGT 342
            MSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG+
Sbjct:    1 MSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIGS 37

HSP 4 Score: 53.1434 bits (126), Expect = 2.119e-78
Identity = 33/64 (51.56%), Postives = 33/64 (51.56%), Query Frame = 3

Query:  369 GSEAPTVFNCVSLY*LDMEMAKFPCMHY*LFGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            GSEAPTVFNCV                               VEISKGSKVKYELDKKTGMIKV
Sbjct:   36 GSEAPTVFNCV-------------------------------VEISKGSKVKYELDKKTGMIKV 68

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A0D2PSY9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G150500 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.825e-66
Identity = 83/174 (47.70%), Postives = 91/174 (52.30%), Query Frame = 3

Query:  819 CHMLE*EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM--YASSLKECHHR 1334
            C ++  EPVLPGCFLRARALGLMPMIDQ                             GEKDDKIIAVC DDPEYKH+TDIKDLPPHRLTEIRRFFED                                     KKNENKEVAV+  LP   A+EA+QYSM  YA  + +   R
Sbjct:  111 CLVIMQEPVLPGCFLRARALGLMPMIDQ-----------------------------GEKDDKIIAVCVDDPEYKHYTDIKDLPPHRLTEIRRFFEDY------------------------------------KKNENKEVAVDKFLPATAAVEAVQYSMDLYAEYIMQTLRR 219

HSP 2 Score: 79.337 bits (194), Expect = 3.825e-66
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDR+LYSSVVYPHNYGFIPRTLCEDNDP+DCLVIMQ
Sbjct:   80 KVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDCLVIMQ 116

HSP 3 Score: 62.3882 bits (150), Expect = 3.825e-66
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 1

Query:  226 KRMSESTEAPR--PRLNERILSAMSKRSVAAHPWHDLEIGTTY-----CNICCVQDL 375
            K  ++  E PR  PRLNERILS+MS+RSVAAHPWHDLEIG        CNI  V ++
Sbjct:    6 KNEAKVVETPRKPPRLNERILSSMSRRSVAAHPWHDLEIGPGAPAIFNCNILKVVEI 62

HSP 4 Score: 47.3654 bits (111), Expect = 3.825e-66
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 3

Query:  477 CSTVQVVEISKGSKVKYELDKKTGMIKV 560
            C+ ++VVEI KGSKVKYELDKKTG+IKV
Sbjct:   54 CNILKVVEIPKGSKVKYELDKKTGLIKV 81

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: V4L668_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10028951mg PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.027e-65
Identity = 79/155 (50.97%), Postives = 84/155 (54.19%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVC DDPEYKH+TDIK+LPPHRL+EIRRFFED                                     KKNENKEVAVND LP   A+EAIQYSM
Sbjct:  118 EPVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDY------------------------------------KKNENKEVAVNDFLPNGPAVEAIQYSM 207

HSP 2 Score: 76.6406 bits (187), Expect = 3.027e-65
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDP+D LVIMQ
Sbjct:   81 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVIMQ 117

HSP 3 Score: 63.5438 bits (153), Expect = 3.027e-65
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  208 SGKNKIKRMSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG 339
              +++ +  SE  + P PRLNERILS++S+RSVAAHPWHDLEIG
Sbjct:    7 KNQSEKENQSEKLQRPTPRLNERILSSLSRRSVAAHPWHDLEIG 50

HSP 4 Score: 45.0542 bits (105), Expect = 3.027e-65
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 3

Query:  459 FGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
             G   P     V+EISKGSKVKYELDKKTG+IKV
Sbjct:   49 IGPGAPVIFNVVIEISKGSKVKYELDKKTGLIKV 82

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: V4U1L6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024641mg PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 3.211e-65
Identity = 80/155 (51.61%), Postives = 87/155 (56.13%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVCADDPEYKH+TDIK+LPPHRLTEIRRFFED                                     KKNENK+VAVN+ LP +TA+EAIQYSM
Sbjct:  148 EPVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDY------------------------------------KKNENKKVAVNEFLPTSTAVEAIQYSM 237

HSP 2 Score: 75.0998 bits (183), Expect = 3.211e-65
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDR+LYSSVVYPHNYGFIPRTLCEDNDP+D LV+MQ
Sbjct:  111 KVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQ 147

HSP 3 Score: 62.003 bits (149), Expect = 3.211e-65
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  202 FYSGKNKIKRMSEST---EAPRPRLNERILSAMSKRSVAAHPWHDLEIGTTYCNI--CCVQDLK 378
            F S  + I +MSE         P+LNERILS++S+RSVAAHPWHDLEIG    N+  C V+  K
Sbjct:   32 FISDSSSIFKMSEEAANVSRSAPKLNERILSSLSRRSVAAHPWHDLEIGPGAPNVFNCVVEITK 95

HSP 4 Score: 44.669 bits (104), Expect = 3.211e-65
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
            VVEI+KGSKVKYELDKKTG+IKV
Sbjct:   90 VVEITKGSKVKYELDKKTGLIKV 112

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: U5DH94_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00064p00191050 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.484e-65
Identity = 86/178 (48.31%), Postives = 93/178 (52.25%), Query Frame = 3

Query:  807 MDYLCHMLE*EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM--YASSLKECHHR 1334
            MD L  M E  PVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVCADDPEY+H+TDIK+LPPHRL EIRRFFED                                     KKNENKEVAVND LP   A EAIQYSM  YA+ + +   R
Sbjct:  106 MDVLVLMQE--PVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYRHYTDIKELPPHRLQEIRRFFEDY------------------------------------KKNENKEVAVNDFLPSTAAYEAIQYSMNLYATYILQSLRR 216

HSP 2 Score: 77.0258 bits (188), Expect = 3.484e-65
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDPMD LV+MQ
Sbjct:   77 KVDRILYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQ 113

HSP 3 Score: 63.1586 bits (152), Expect = 3.484e-65
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  208 SGKNKIKRMSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG 339
              KN +  M ES + P PRLNERILS++S+RSVAAHPWHDL+IG
Sbjct:    4 GSKNGLSAM-ESEKRPTPRLNERILSSLSRRSVAAHPWHDLDIG 46

HSP 4 Score: 45.0542 bits (105), Expect = 3.484e-65
Identity = 23/34 (67.65%), Postives = 24/34 (70.59%), Query Frame = 3

Query:  459 FGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
             G   P     VVEI KGSKVKYELDKKTG+IKV
Sbjct:   45 IGPGAPSVVNCVVEIGKGSKVKYELDKKTGLIKV 78

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A0D3AS94_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.544e-65
Identity = 80/155 (51.61%), Postives = 84/155 (54.19%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVC DDPEYKH+TDIK+LPPHRLTEIRRFFED                                     KKNENKEVAVND LP   A+EAIQYSM
Sbjct:  112 EPVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCVDDPEYKHYTDIKELPPHRLTEIRRFFEDY------------------------------------KKNENKEVAVNDFLPNGPAVEAIQYSM 201

HSP 2 Score: 76.6406 bits (187), Expect = 3.544e-65
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDP+D LVIMQ
Sbjct:   75 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVIMQ 111

HSP 3 Score: 62.3882 bits (150), Expect = 3.544e-65
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1

Query:  235 SESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG 339
            S   + P PRLNERILS++SKRSVAAHPWHDLEIG
Sbjct:   10 SGKLQKPTPRLNERILSSLSKRSVAAHPWHDLEIG 44

HSP 4 Score: 45.4394 bits (106), Expect = 3.544e-65
Identity = 24/34 (70.59%), Postives = 25/34 (73.53%), Query Frame = 3

Query:  459 FGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
             G   P     VVEISKGSKVKYELDKKTG+IKV
Sbjct:   43 IGPGAPVIFNVVVEISKGSKVKYELDKKTGLIKV 76

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: M4CWF4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra008551 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.544e-65
Identity = 80/155 (51.61%), Postives = 84/155 (54.19%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVC DDPEYKH+TDIK+LPPHRLTEIRRFFED                                     KKNENKEVAVND LP   A+EAIQYSM
Sbjct:  112 EPVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCVDDPEYKHYTDIKELPPHRLTEIRRFFEDY------------------------------------KKNENKEVAVNDFLPNGPAVEAIQYSM 201

HSP 2 Score: 76.6406 bits (187), Expect = 3.544e-65
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDP+D LVIMQ
Sbjct:   75 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVIMQ 111

HSP 3 Score: 62.3882 bits (150), Expect = 3.544e-65
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1

Query:  235 SESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG 339
            S   + P PRLNERILS++SKRSVAAHPWHDLEIG
Sbjct:   10 SGKLQKPTPRLNERILSSLSKRSVAAHPWHDLEIG 44

HSP 4 Score: 45.4394 bits (106), Expect = 3.544e-65
Identity = 24/34 (70.59%), Postives = 25/34 (73.53%), Query Frame = 3

Query:  459 FGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
             G   P     VVEISKGSKVKYELDKKTG+IKV
Sbjct:   43 IGPGAPVIFNVVVEISKGSKVKYELDKKTGLIKV 76

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
IPYR_PYRAB	4.052e-16	54.05	Inorganic pyrophosphatase OS=Pyrococcus abyssi (st...	[more]
IPYR_NOSS1	4.659e-16	33.71	Inorganic pyrophosphatase OS=Nostoc sp. (strain PC...	[more]
IPYR_THEKO	1.392e-15	51.35	Inorganic pyrophosphatase OS=Thermococcus kodakare...	[more]
IPYR_PYRHO	1.703e-15	54.05	Inorganic pyrophosphatase OS=Pyrococcus horikoshii...	[more]
IPYR_UREPA	2.348e-14	34.48	Inorganic pyrophosphatase OS=Ureaplasma parvum ser...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2MYL7_GOSRA	0.000e+0	98.97	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NZJ6_GOSAR	0.000e+0	94.41	Eukaryotic translation initiation factor 3 subunit...	[more]
A0A061E6U3_THECC	1.092e-130	61.09	RNA-binding family protein, putative isoform 1 OS=...	[more]
A0A0D2PC93_GOSRA	2.119e-78	55.90	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PSY9_GOSRA	3.825e-66	47.70	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
V4L668_EUTSA	3.027e-65	50.97	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
V4U1L6_9ROSI	3.211e-65	51.61	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
U5DH94_AMBTC	3.484e-65	48.31	Uncharacterized protein OS=Amborella trichopoda GN...	[more]
A0A0D3AS94_BRAOL	3.544e-65	51.61	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
M4CWF4_BRARP	3.544e-65	51.61	Uncharacterized protein OS=Brassica rapa subsp. pe...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..175
None	No IPR available	PANTHER	PTHR37200:SF1	SUBFAMILY NOT NAMED	coord: 87..434
None	No IPR available	PANTHER	PTHR37200	FAMILY NOT NAMED	coord: 87..434
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 21..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..503
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..23 score: 0.535
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 199..281 e-value: 7.3E-4 score: 28.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 200..267 e-value: 9.8E-5 score: 22.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 198..285 score: 10.326
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 165..269 e-value: 2.3E-8 score: 33.4
IPR012677	Nucleotide-binding alpha-beta plait domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 192..272

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097170 ID=g.barbadense_cottongen_reftransV1_0097170; Name=g.barbadense_cottongen_reftransV1_0097170; organism=Gossypium barbadense; type=contig; length=3431bp
ACTCATTATATCCCAGAACTAAGTTTTACCATGTGGAGAAAATAGTTGCT
TTTTTTGCTGATCTTTGTGTTGTATTTTATTGATGGAGCAACCTTCATAC
ATATCAAAGGTACTGTAAAGTTTTATAATATACTCATAAGCATAAACCCC
TGTTTTATGCAACATGGTGGACTGAATTTGATTGAATGTTGATGCATTTT
ATTCTATTCTGGAAAAAATAAAATAAAAAGGATGAGTGAATCGACTGAAG
CTCCACGCCCCCGTCTAAATGAGAGGATCCTATCGGCTATGTCAAAGAGA
TCGGTAGCTGCACATCCATGGCATGATCTTGAGATTGGTACCACATATTG
CAATATATGTTGTGTGCAGGATCTGAAGCTCCAACCGTTTTCAATTGTGT
AAGCCTTTATTGACTGGACATGGAAATGGCGAAGTTTCCATGCATGCACT
ACTAATTGTTCGGTTGTTGGATTCCTTGTTCAACTGTACAGGTTGTGGAG
ATATCAAAAGGCAGTAAGGTGAAATATGAACTTGACAAAAAGACCGGAAT
GATTAAGGTACCTTTAGACATGTTGGTGAGGCATATACCTCGCAGGATAA
GGCAAGGCTTTTCCCTTTCTTGTATTGATGAGTTTAAATGAATCCCAGGT
TGATCGGATTTTGTATTCCTCAGTAGTCTATCCTCACAATTATGGTTTCA
TCCCTCGCACGCTATGCGAAGACAATGATCCCATGGATTGTTTGGTTATC
ATGCAGGTGAACCACCTTATCTCATTTTCTTCTCTCCATCTCTACCTTAT
ATGTTGATGGACTATTTATGTCATATGTTGGAATAGGAGCCAGTTCTTCC
TGGATGTTTTCTGCGAGCCAGAGCCCTTGGACTGATGCCCATGATTGACC
AGGTATTTCATTGAAGTTCAAAGAAGCTAACCTTTTCAGACTTCTTCCCT
CGAGTTTGTGTCATTAACTACTTCATTGTTGTCACTCAGGGGGAGAAAGA
TGATAAGATCATTGCAGTTTGTGCAGATGATCCAGAATACAAACATTTCA
CCGATATCAAAGATCTTCCCCCTCATCGCCTTACCGAGATCCGCCGTTTC
TTTGAAGATTGTATCCTTTTCCAACTTAAACCATACAACAGTTTTGTTTG
CTTAATGAAACAACATTACATCTTACTTCCCAATGTCAGGAAATACTGAT
TTCCTAACCATTTCACAGACAAGAAAAATGAGAACAAGGAGGTTGCAGTC
AATGATATTTTACCTGTAAACACAGCTATTGAAGCCATCCAGTATTCAAT
GTATGCCTCTTCCTTAAAAGAATGCCATCATAGAAGGGAATTCCTAAGTC
TAAATCTGATGGACAGTCCCCTTGCTCTACAATTATTAGTCAGTGTTGTT
CTTTTTGGTTCTATATCTGATTAAGGGTTTCATGTTGCTATGGCAGGGAC
CTTTACAACGAGTACATTATACAAACACTGAAGCAATAGGCTCAAAAACG
GCTATTTTCCATTCATTCATGGAGGGAAACTGCATCATACTAAATAAAAG
CATCTTATCGACCGCGGTTGAATGAGAATGATAGCCCCATTGATTACATT
TCTTTTTGTAGTTTCAAATGATTGTTATCATCATCATTATAATTATTTTC
ATTGCTCATTGGATTAAAATCTCTTGTGAAAAGAAGTGATAAAAAAGAAT
GTATAAGTTTTTACTAGAACTAGTAAAATATCAAATTCTCTTACACATTT
GCTGCTTACTACGACTCTTCCTTGGAATTCGAAGGAGTTTTCAACCCATA
TTTGGAGAAGGCCCCTGTTAGCTGTGCCTTTTCCTTAATCTTTAACCTCT
TCGCAGATCCTGGAATATCGAGCTTTTGAACCTTTTGCTCTTTCGTAACT
TTTTGTTGGTTTTGTTTAGCAACTACCTTTTTCTTATTATTAGACCCAAA
TCTTTCTAGCTTTTGACCTTTTTGTTCTTTTGGAACTCTTTGCTGTTTCC
CTCTTGCAAGTAGCTTTTGCTCAAGAGCCCTAATTCGTTCCAGCGGAGTT
AAGGCGATCAAATCAGCAGCTGCACGCTTAAACCTCGGTTCCATGATATC
AGCAGTACTTGCCTCTGCTTCACTAATAGCATTAAGATTGTTTCTACCTT
CTCCTACTTCTACTTCATCAAACTCATCATCTTGGTCATCAAATTCATCA
GATACAAGCTCATCATCCAGATCATCAAATTCATCAGATACAAGTTCATC
ATCATGGTCGTCAACTTCATCAGATACACTTTCCAATGATAAATCTGAGG
AAGAGTTCTTCATATCGAAATTAGCATTCGGACCATCTACGAAGTGAGAA
ATTGCCACTTCATCTGTGATGGATCCATTGTCCCACAATTCTTCATGAGC
AGGACTGTGCGAAAGTGAATTTATCATCTCACATTTTATTTGCTTCTGAA
TCCTACCAAAGGTGAGATTATGTCCAGAGAAAATTTGCACAAACCTAATT
GCATCCACCTCATGCTTAAATTCAACGAAGGCAAAACCTTTGCAAACAGG
GTCTTTAGTCTTCTTATTCCCAGAAACAGCTGGAGATATATTAATTATCC
CAGAAACCCCATCGAAAGCAGCTTTCAAATCCCTGTGAATGTTCTTTTTC
TTAGGAAGATTGCCCACTCTCACACGAATTCCACTTGGAACACTTTCAGC
TTTCTTGTTTTGCTGATCACCTTTCTTGGAACCAGGCTTGACAGGATTGT
TTTTAAGGTTGTTGACATTAACCGTTTGTGCTTGTCTGCTTTGCTCTATT
TCTTCAAGCAGTTTTTCTTCAATAGAAGTATCGTACACTTTCCCTTCACC
GAACCCACGGGGCTTGTTCTCGAGCCACTTCTTCATTTTACCAAGCGGAA
GAAACATGGCCTCATCGCCGTCCTCATCGTCGTCGTCGAATTCATCATCA
AAATCAATGAATTCGTCGCCGTCGTTGTCCTCGTCAGAACCACCCATTTC
GAAGAGGGTAGTGCCACCGCCGCCTTTTCTTCCTTTGTTAAAAGCAGAAG
CCCGCAATCTATTGGAATCTATATTAGGGAAAACAGAAAGAGAAGGGAAA
TGGGCTGATTGGGAAAGTAGAAGCAAAGAAGAAGAGAGAAAGATAGTGGC
TGTGTTCTTCGGGATATGAGCGTGGTAGCTTCTGCTGCTGCTGCCGCCAT
TGGCAAAGTGAAGAGGAGTAAAGAGAAACGTCGAACTAGAAAATGAAGAC
ATTCCCATCGTCTTCATCATCTTCCAGAGTTCCACTTTATCTATCTACTT
GTATTCCTCGAATCCAATATATCCCTCTCTTAGAGAGCTTACATGGATAT
TATCTTCTTACTGGACTTCTTTTTCTTTTCCGAAATCATCTTTAACTGGA
CTTGAATATTTCGGTAAAAAGAAATTTCCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Search form

g.barbadense_cottongen_reftransV1_0097170, g.barbadense_cottongen_reftransV1_0097170 (contig) Gossypium barbadense

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