g.barbadense_cottongen_reftransV1_0097170, g.barbadense_cottongen_reftransV1_0097170 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097170
Unique Name	g.barbadense_cottongen_reftransV1_0097170
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3431

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR2_CHLRE (Soluble inorganic pyrophosphatase 2 OS=Chlamydomonas reinhardtii GN=ppa2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.842e-35
Identity = 58/155 (37.42%), Postives = 72/155 (46.45%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPV+P CFLRA+ +G+M M+DQ                             GE+DDK+IAV ADDPEYK FTDI  LPPHRL EI+RFFED                                     KKNE+KEV V+D L    A + ++ S+
Sbjct:   86 EPVVPMCFLRAKPIGVMQMLDQ-----------------------------GERDDKLIAVHADDPEYKGFTDISQLPPHRLAEIKRFFEDY------------------------------------KKNEHKEVVVDDFLGAEEAKKVVKDSL 175

HSP 2 Score: 70.0922 bits (170), Expect = 3.842e-35
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1

Query:  649 VDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            VDRILYSSVVYPHNYGF+P+TLCED DP+D LV+MQ
Sbjct:   50 VDRILYSSVVYPHNYGFVPKTLCEDGDPLDVLVLMQ 85

HSP 3 Score: 34.6538 bits (78), Expect = 3.842e-35
Identity = 15/20 (75.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGM 551
            V+EI +GSKVKYELDK TG+
Sbjct:   28 VIEIPRGSKVKYELDKDTGL 47

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_LEPIN (Inorganic pyrophosphatase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=ppa PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.998e-20
Identity = 30/87 (34.48%), Postives = 41/87 (47.13%), Query Frame = 3

Query:  849 PGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFED 1109
            P C ++A+ +G+M M+D                              GE+DDKIIAV A+D    H  DI +LPPH   E++ FFED
Sbjct:   83 PLCLVKAKVIGVMRMLDS-----------------------------GEEDDKIIAVAANDMSVNHINDISELPPHFTLELKHFFED 140

HSP 2 Score: 55.4546 bits (132), Expect = 1.998e-20
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQVN 762
            ++DR+LYSS  YP NYGFIP++ C D DP+D LV+ QV 
Sbjct:   42 KLDRVLYSSFYYPANYGFIPQSYCGDQDPLDILVLSQVE 80

HSP 3 Score: 31.5722 bits (70), Expect = 1.998e-20
Identity = 12/23 (52.17%), Postives = 20/23 (86.96%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
            V+EI +GS+ KYE+DK+ G++K+
Sbjct:   21 VIEIKRGSRAKYEVDKEYGILKL 43

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_LEPIC (Inorganic pyrophosphatase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=ppa PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.998e-20
Identity = 30/87 (34.48%), Postives = 41/87 (47.13%), Query Frame = 3

Query:  849 PGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFED 1109
            P C ++A+ +G+M M+D                              GE+DDKIIAV A+D    H  DI +LPPH   E++ FFED
Sbjct:   83 PLCLVKAKVIGVMRMLDS-----------------------------GEEDDKIIAVAANDMSVNHINDISELPPHFTLELKHFFED 140

HSP 2 Score: 55.4546 bits (132), Expect = 1.998e-20
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQVN 762
            ++DR+LYSS  YP NYGFIP++ C D DP+D LV+ QV 
Sbjct:   42 KLDRVLYSSFYYPANYGFIPQSYCGDQDPLDILVLSQVE 80

HSP 3 Score: 31.5722 bits (70), Expect = 1.998e-20
Identity = 12/23 (52.17%), Postives = 20/23 (86.96%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
            V+EI +GS+ KYE+DK+ G++K+
Sbjct:   21 VIEIKRGSRAKYEVDKEYGILKL 43

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_THEEB (Inorganic pyrophosphatase OS=Thermosynechococcus elongatus (strain BP-1) GN=ppa PE=3 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 4.169e-18
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 1

Query:  649 VDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIM 753
            +DR+LYS+VVYP++YGFIP TL +D DP+D LV+M
Sbjct:   42 LDRVLYSAVVYPYDYGFIPNTLADDGDPLDGLVMM 76

HSP 2 Score: 55.0694 bits (131), Expect = 4.169e-18
Identity = 30/89 (33.71%), Postives = 40/89 (44.94%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFF 1103
            EP  PGC + AR +G++ MID                              G++D+KI+ V  DDP Y     +KD+ PHRL EI  FF
Sbjct:   78 EPTFPGCVIPARPIGMLEMIDS-----------------------------GDRDEKILCVPVDDPRYAEVKSLKDIAPHRLEEIAEFF 137

HSP 3 Score: 24.6386 bits (52), Expect = 4.169e-18
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 3

Query:  474 PCSTVQVVEISKGSKVKYELDKK 542
            P     +VEI+ GS+ KYE DK+
Sbjct:   14 PGVVNVLVEIAGGSRNKYEFDKE 36

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_METTH (Inorganic pyrophosphatase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ppa PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 8.006e-18
Identity = 35/100 (35.00%), Postives = 44/100 (44.00%), Query Frame = 3

Query:  807 MDYLCHMLE*EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFE 1106
            MD L  M E  P  PGC + +R +GL+ MID                              G++DDKI+AV   DP +    DI D+P H L EI  FFE
Sbjct:   70 MDILVLMDE--PTFPGCIIESRPIGLLRMIDG-----------------------------GDQDDKILAVPVADPHFADVKDISDIPEHNLKEIANFFE 138

HSP 2 Score: 53.5286 bits (127), Expect = 8.006e-18
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1

Query:  634 LNESQVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIM 753
            L    +DR+LYS+V YP  YG IPRTL +D DPMD LV+M
Sbjct:   37 LQAFALDRVLYSAVFYPAEYGIIPRTLYDDGDPMDILVLM 76

HSP 3 Score: 25.7942 bits (55), Expect = 8.006e-18
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 3

Query:  462 GCWIPCSTVQVVEISKGSKVKYELDK 539
            G  +P     VVEI KGS+ KYE  K
Sbjct:   10 GPSVPEVVYAVVEIPKGSRNKYEYHK 35

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_PYRFU (Inorganic pyrophosphatase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=ppa PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 5.472e-17
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            ++DR+LYS   YP +YG IPRT  ED+DP D +VIM+
Sbjct:   41 KLDRVLYSPFFYPVDYGIIPRTWYEDDDPFDIMVIMR 77

HSP 2 Score: 41.9726 bits (97), Expect = 5.472e-17
Identity = 29/90 (32.22%), Postives = 39/90 (43.33%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFE 1106
            EPV P   + AR +GL  MID                              G+KD K++AV  +DP +K + DI D+P   L EI  FF+
Sbjct:   78 EPVYPLTIIEARPIGLFKMIDS-----------------------------GDKDYKVLAVPVEDPYFKDWKDIDDVPKAFLDEIAHFFK 138

HSP 3 Score: 38.5058 bits (88), Expect = 5.472e-17
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  462 GCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            G  +P     ++EI KGS+ KYELDKKTG++K+
Sbjct:   10 GPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKL 42

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_METKA (Inorganic pyrophosphatase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=ppa PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.338e-17
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            ++DR+LYS   YP +YGFIPRTL +D DP+D LVIMQ
Sbjct:   42 KLDRVLYSPFHYPLDYGFIPRTLYDDGDPLDILVIMQ 78

HSP 2 Score: 47.3654 bits (111), Expect = 9.338e-17
Identity = 27/91 (29.67%), Postives = 40/91 (43.96%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFED 1109
            +P  PGC + AR +GLM M+D                               ++DDK++AV  +DP +K   D+ D+P H L EI   F +
Sbjct:   79 DPTFPGCVIEARPIGLMKMLDD-----------------------------SDQDDKVLAVPTEDPRFKDVKDLDDVPKHLLDEIAHMFSE 140

HSP 3 Score: 28.1054 bits (61), Expect = 9.338e-17
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 3

Query:  474 PCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            P     V+EI +GS+ KYE D++ G  K+
Sbjct:   15 PDVVYAVIEIPRGSRNKYEYDEERGFFKL 43

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_THELN (Inorganic pyrophosphatase OS=Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C) GN=ppa PE=3 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 1.089e-16
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            ++DR+LYS   YP +YG IP+T  +D+DP D +VIM+
Sbjct:   41 KLDRVLYSPFHYPVDYGIIPQTWYDDDDPFDIMVIMR 77

HSP 2 Score: 44.669 bits (104), Expect = 1.089e-16
Identity = 28/90 (31.11%), Postives = 38/90 (42.22%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFE 1106
            EP  PG  + AR +GL  MID                              G+KD K++AV  +DP +  + DI D+P   L EI  FF+
Sbjct:   78 EPTYPGVLIEARPIGLFKMIDS-----------------------------GDKDYKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQ 138

HSP 3 Score: 39.6614 bits (91), Expect = 1.089e-16
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:  462 GCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            G  +P     ++EI KGS+ KYELDKKTG+IK+
Sbjct:   10 GPEVPEVVYALIEIPKGSRNKYELDKKTGLIKL 42

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_SYNY3 (Inorganic pyrophosphatase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ppa PE=1 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 1.394e-16
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1

Query:  634 LNESQVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIM 753
            +N   +DR+LYSSV YP++YGFIP TL +D DP+D +VIM
Sbjct:   35 MNCFALDRVLYSSVQYPYDYGFIPNTLADDGDPLDGMVIM 74

HSP 2 Score: 51.2174 bits (121), Expect = 1.394e-16
Identity = 29/89 (32.58%), Postives = 39/89 (43.82%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFF 1103
            +P  PGC + AR +G++ MID                              G++D+KI+ V A DP Y +   I DL  HRL EI  FF
Sbjct:   76 QPTFPGCVITARPIGMLEMIDG-----------------------------GDRDEKILCVPAKDPRYTYVKSINDLAGHRLDEIAEFF 135

HSP 3 Score: 23.483 bits (49), Expect = 1.394e-16
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDK 539
            ++EI  GSK KYE DK
Sbjct:   18 LIEIPAGSKNKYEFDK 33

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Match: IPYR_THEAC (Inorganic pyrophosphatase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=ppa PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.175e-16
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1

Query:  649 VDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            VDR+LYSSVVYP +YG IPRTL  D DPMD +V++ 
Sbjct:   43 VDRVLYSSVVYPVDYGLIPRTLYYDGDPMDVMVLIS 78

HSP 2 Score: 50.447 bits (119), Expect = 2.175e-16
Identity = 28/98 (28.57%), Postives = 41/98 (41.84%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLK 1130
            +P  PG  ++ R +G+M M+D                             QGE D+KI+AV   DP   +  D+KD+  H L EI  FF    + + K
Sbjct:   79 QPTFPGAIMKVRPIGMMKMVD-----------------------------QGETDNKILAVFDKDPNVSYIKDLKDVNAHLLDEIANFFSTYKILEKK 147

HSP 3 Score: 25.0238 bits (53), Expect = 2.175e-16
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 3

Query:  474 PCSTVQVVEISKGSKVKYELDK 539
            P     +VEI +GS+VKYE+ K
Sbjct:   15 PEEVYVIVEIPRGSRVKYEIAK 36

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A078EQX0_BRANA (BnaA02g20410D protein OS=Brassica napus GN=BnaC02g27940D PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 3.544e-65
Identity = 80/155 (51.61%), Postives = 84/155 (54.19%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVC DDPEYKH+TDIK+LPPHRLTEIRRFFED                                     KKNENKEVAVND LP   A+EAIQYSM
Sbjct:  112 EPVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCVDDPEYKHYTDIKELPPHRLTEIRRFFEDY------------------------------------KKNENKEVAVNDFLPNGPAVEAIQYSM 201

HSP 2 Score: 76.6406 bits (187), Expect = 3.544e-65
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDP+D LVIMQ
Sbjct:   75 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVIMQ 111

HSP 3 Score: 62.3882 bits (150), Expect = 3.544e-65
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1

Query:  235 SESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG 339
            S   + P PRLNERILS++SKRSVAAHPWHDLEIG
Sbjct:   10 SGKLQKPTPRLNERILSSLSKRSVAAHPWHDLEIG 44

HSP 4 Score: 45.4394 bits (106), Expect = 3.544e-65
Identity = 24/34 (70.59%), Postives = 25/34 (73.53%), Query Frame = 3

Query:  459 FGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
             G   P     VVEISKGSKVKYELDKKTG+IKV
Sbjct:   43 IGPGAPVIFNVVVEISKGSKVKYELDKKTGLIKV 76

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: B9SZJ2_RICCO (Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0394460 PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 3.746e-65
Identity = 128/201 (63.68%), Postives = 152/201 (75.62%), Query Frame = -3

Query: 2305 MFLPLGKMKKWLENKPRGFGEGKVYDTSIEEKLLEEIEQSRQAQTXXXXXXXXXXXXPGSKKGDQQNKKAESVPSGIRVRVGNLPKKKNIHRDLKAAFDGVSGIINISPAVSGNKKTKDPVCKGFAFVEFKHEVDAIRFVQIFSGHNLTFGRIQKQIKCEMINSLSHSPAHEELWDNGSITDEVAISHFVDGPNANFDMKN 2907
            M LP GKMKKWLENKPRGFGEGKVYDT +E+KLLEEIEQSR+AQ  N++ LKNNPVKP S+K  Q+NK AE +PSGIRVR+ NLPKK+NIHRDL+ AF  V G++NI PAVSGNKKTKDPVCKGFAFV+FK E DA RFVQ FSG ++ FGRIQKQIKC M N  S + + +E   +      + +       +AN DM +
Sbjct:  128 MLLPFGKMKKWLENKPRGFGEGKVYDTFVEDKLLEEIEQSRKAQAANLDTLKNNPVKPASEKDGQKNKVAEVIPSGIRVRIINLPKKRNIHRDLQLAFKEVPGVVNIFPAVSGNKKTKDPVCKGFAFVDFKSEEDADRFVQQFSGQSIVFGRIQKQIKCMMTNGHSSNSSDDESASSFYSDSNLTVPALEADIDANADMDD 328

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: W1P0M0_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00102p00015990 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.208e-65
Identity = 86/178 (48.31%), Postives = 93/178 (52.25%), Query Frame = 3

Query:  807 MDYLCHMLE*EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM--YASSLKECHHR 1334
            MD L  M E  PVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVCADDPEY+H+TDIK+LPPHRL EIRRFFED                                     KKNENKEVAVND LP   A EAIQYSM  YA+ + +   R
Sbjct:  106 MDVLVLMQE--PVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYRHYTDIKELPPHRLQEIRRFFEDY------------------------------------KKNENKEVAVNDFLPSTAAYEAIQYSMDLYATYILQSLRR 216

HSP 2 Score: 77.0258 bits (188), Expect = 4.208e-65
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDPMD LV+MQ
Sbjct:   77 KVDRILYSSVVYPHNYGFIPRTLCEDNDPMDVLVLMQ 113

HSP 3 Score: 63.1586 bits (152), Expect = 4.208e-65
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  208 SGKNKIKRMSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG 339
              KN +  M ES + P PRLNERILS++S+RSVAAHPWHDL+IG
Sbjct:    4 GSKNGLSAM-ESEKRPTPRLNERILSSLSRRSVAAHPWHDLDIG 46

HSP 4 Score: 45.0542 bits (105), Expect = 4.208e-65
Identity = 23/34 (67.65%), Postives = 24/34 (70.59%), Query Frame = 3

Query:  459 FGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
             G   P     VVEI KGSKVKYELDKKTG+IKV
Sbjct:   45 IGPGAPSVVNCVVEIGKGSKVKYELDKKTGLIKV 78

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A067HFJ1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g040461mg PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.360e-64
Identity = 80/155 (51.61%), Postives = 87/155 (56.13%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVCADDPEYKH+TDIK+LPPHRLTEIRRFFED                                     KKNENK+VAVN+ LP +TA+EAIQYSM
Sbjct:  148 EPVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYKHYTDIKELPPHRLTEIRRFFEDY------------------------------------KKNENKKVAVNEFLPTSTAVEAIQYSM 237

HSP 2 Score: 74.7146 bits (182), Expect = 1.360e-64
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDR+LYSSVVYPHNYGFIPRTLCEDNDP+D LV+MQ
Sbjct:  111 KVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQ 147

HSP 3 Score: 61.6178 bits (148), Expect = 1.360e-64
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  202 FYSGKNKIKRMSEST---EAPRPRLNERILSAMSKRSVAAHPWHDLEIGTTYCNI--CCVQDLK 378
            F S  + I +MSE         P+LNERILS++S+RSVAAHPWHDLEIG    N+  C V+  K
Sbjct:   32 FISDSSSIFKMSEEAANVSRSAPKLNERILSSLSRRSVAAHPWHDLEIGPGAPNVFNCVVEITK 95

HSP 4 Score: 44.669 bits (104), Expect = 1.360e-64
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
            VVEI+KGSKVKYELDKKTG+IKV
Sbjct:   90 VVEITKGSKVKYELDKKTGLIKV 112

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A059C0M9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00014 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.337e-64
Identity = 80/155 (51.61%), Postives = 85/155 (54.84%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPV+PGCFLRARA+GLMPMIDQ                             GEKDDKIIAVCADDPEYKH+TDIK LPPHRL+EIRRFFED                                     KKNENKEVAVND LP +TA EAIQYSM
Sbjct:  106 EPVVPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYKHYTDIKQLPPHRLSEIRRFFEDY------------------------------------KKNENKEVAVNDFLPSSTATEAIQYSM 195

HSP 2 Score: 75.0998 bits (183), Expect = 7.337e-64
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDP+D LV+MQ
Sbjct:   69 KVDRILYSSVVYPHNYGFIPRTLCEDNDPIDVLVLMQ 105

HSP 3 Score: 60.4622 bits (145), Expect = 7.337e-64
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1

Query:  232 MSE--STEAPRPRLNERILSAMSKRSVAAHPWHDLEIGTTYCNI--CCVQDLK 378
            MSE   +  P PRLNERILS++S+RSVAAHPWHDLEIG     I  C V+  K
Sbjct:    1 MSEVDGSHRPVPRLNERILSSLSRRSVAAHPWHDLEIGPEAPQIVNCVVEITK 53

HSP 4 Score: 44.2838 bits (103), Expect = 7.337e-64
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
            VVEI+KGSKVKYELDKKTG+IKV
Sbjct:   48 VVEITKGSKVKYELDKKTGLIKV 70

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: G8A0L7_MEDTR (Soluble inorganic pyrophosphatase OS=Medicago truncatula GN=MTR_103s0102 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.651e-64
Identity = 76/155 (49.03%), Postives = 84/155 (54.19%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVCADDPEYKH+TD K+L PHRL EI+RFFED                                     KKNENKEVAVN+ LP +TA+EAIQ+SM
Sbjct:  135 EPVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYKHYTDFKELQPHRLMEIKRFFEDY------------------------------------KKNENKEVAVNEFLPPSTAVEAIQHSM 224

HSP 2 Score: 75.485 bits (184), Expect = 8.651e-64
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDP+D LV+MQ
Sbjct:   98 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQ 134

HSP 3 Score: 65.855 bits (159), Expect = 8.651e-64
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1

Query:  196 ILFYSGKNKIKRMSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIGTTYCNI--CCVQDLK 378
            +LF   + K + + E+   P PRLNERILS++S+RSVAAHPWHDLEIG    NI  C V+  K
Sbjct:   22 VLFKMSEEKSEEVQETR--PTPRLNERILSSLSRRSVAAHPWHDLEIGPGAPNIFNCVVEITK 82

HSP 4 Score: 46.2098 bits (108), Expect = 8.651e-64
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
            VVEI+KGSKVKYELDKKTGMIKV
Sbjct:   77 VVEITKGSKVKYELDKKTGMIKV 99

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A059A7C8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03162 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.033e-63
Identity = 80/168 (47.62%), Postives = 88/168 (52.38%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM--YASSLKECHHR 1334
            EPVLPGCFLRA+A+GLMPMIDQ                             GEKDDKIIAVCADDPEY+H+ DIKDLPPHRL EIRRFFED                                     KKNENKEVAVND LP + A EA+Q+SM  YA  + E   R
Sbjct:  116 EPVLPGCFLRAKAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYRHYNDIKDLPPHRLAEIRRFFEDY------------------------------------KKNENKEVAVNDFLPASAAFEAVQHSMNLYADYIVESLRR 218

HSP 2 Score: 75.8702 bits (185), Expect = 1.033e-63
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDP+D L+IMQ
Sbjct:   79 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQ 115

HSP 3 Score: 61.6178 bits (148), Expect = 1.033e-63
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1

Query:  223 IKRMSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG 339
            +++ + +  AP P LNERILS+MS+RSVAAHPWHDLEIG
Sbjct:   10 VQKGTNAHHAPHPPLNERILSSMSRRSVAAHPWHDLEIG 48

HSP 4 Score: 46.595 bits (109), Expect = 1.033e-63
Identity = 29/64 (45.31%), Postives = 31/64 (48.44%), Query Frame = 3

Query:  369 GSEAPTVFNCVSLY*LDMEMAKFPCMHY*LFGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            G  APTVFNCV                               +EISKGSKVKYELDKKTG+IKV
Sbjct:   48 GPGAPTVFNCV-------------------------------IEISKGSKVKYELDKKTGLIKV 80

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A059CK48_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02652 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.362e-63
Identity = 79/155 (50.97%), Postives = 83/155 (53.55%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPG FLRARA+GLMPMIDQ                             GEKDDKIIAVCADDPEYKH+TDIK+L PHRL+EIRRFFED                                     KKNENKEVAVND LP  TA EAIQYSM
Sbjct:  125 EPVLPGTFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYKHYTDIKELAPHRLSEIRRFFEDY------------------------------------KKNENKEVAVNDFLPSTTATEAIQYSM 214

HSP 2 Score: 75.0998 bits (183), Expect = 1.362e-63
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDR+LYSSVVYPHNYGFIPRTLCEDNDP+D L++MQ
Sbjct:   88 KVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLILMQ 124

HSP 3 Score: 62.003 bits (149), Expect = 1.362e-63
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1

Query:  244 TEAPRPRLNERILSAMSKRSVAAHPWHDLEIGTTYCNI--CCVQ 369
            T+ P PRLNERILS++S+RSVAAHPWHDLEIG    +I  C V+
Sbjct:   26 TQRPVPRLNERILSSLSRRSVAAHPWHDLEIGPGAPHIFNCVVE 69

HSP 4 Score: 45.8246 bits (107), Expect = 1.362e-63
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
            VVEISKGSKVKYELDKKTG+IKV
Sbjct:   67 VVEISKGSKVKYELDKKTGLIKV 89

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A072TMB0_MEDTR (Soluble inorganic pyrophosphatase OS=Medicago truncatula GN=MTR_8g024050 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.445e-63
Identity = 76/155 (49.03%), Postives = 84/155 (54.19%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM 1301
            EPVLPGCFLRARA+GLMPMIDQ                             GEKDDKIIAVCADDPEYKH+TD K+L PHRL EI+RFFED                                     KKNENKEVAVN+ LP +TA+EAIQ+SM
Sbjct:  155 EPVLPGCFLRARAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYKHYTDFKELQPHRLMEIKRFFEDY------------------------------------KKNENKEVAVNEFLPPSTAVEAIQHSM 244

HSP 2 Score: 76.2554 bits (186), Expect = 1.445e-63
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDRILYSSVVYPHNYGFIPRTLCEDNDP+D LV+MQ
Sbjct:  118 KVDRILYSSVVYPHNYGFIPRTLCEDNDPLDVLVLMQ 154

HSP 3 Score: 63.1586 bits (152), Expect = 1.445e-63
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1

Query:  253 PRPRLNERILSAMSKRSVAAHPWHDLEIGTTYCNI--CCVQDLK 378
            P PRLNERILS++S+RSVAAHPWHDLEIG    NI  C V+  K
Sbjct:   59 PTPRLNERILSSLSRRSVAAHPWHDLEIGPGAPNIFNCVVEITK 102

HSP 4 Score: 45.8246 bits (107), Expect = 1.445e-63
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 3

Query:  492 VVEISKGSKVKYELDKKTGMIKV 560
            VVEI+KGSKVKYELDKKTGMIKV
Sbjct:   97 VVEITKGSKVKYELDKKTGMIKV 119

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Match: A0A0B0Q0H5_GOSAR (Soluble inorganic pyrophosphatase OS=Gossypium arboreum GN=F383_15814 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.575e-62
Identity = 81/168 (48.21%), Postives = 89/168 (52.98%), Query Frame = 3

Query:  837 EPVLPGCFLRARALGLMPMIDQVFH*SSKKLTFSDFFPRVCVINYFIVVTQGEKDDKIIAVCADDPEYKHFTDIKDLPPHRLTEIRRFFEDCILFQLKPYNSFVCLMKQHYILLPNVRKY*FPNHFTDKKNENKEVAVNDILPVNTAIEAIQYSM--YASSLKECHHR 1334
            EPVLPGCFLRA+A+GLMPMIDQ                             GEKDDKIIAVCADDPEY+H+ DIK+LPPHRL EIRRFFED                                     KKNENKEVAVND LP +TA EAIQ+SM  YA  + E   R
Sbjct:  114 EPVLPGCFLRAKAIGLMPMIDQ-----------------------------GEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDY------------------------------------KKNENKEVAVNDFLPASTAYEAIQHSMNLYADYIVESLRR 216

HSP 2 Score: 75.0998 bits (183), Expect = 1.575e-62
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 1

Query:  646 QVDRILYSSVVYPHNYGFIPRTLCEDNDPMDCLVIMQ 756
            +VDR+LYSSVVYPHNYGFIPRTLCEDNDP+D L+IMQ
Sbjct:   77 KVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQ 113

HSP 3 Score: 60.4622 bits (145), Expect = 1.575e-62
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1

Query:  229 RMSESTEAPRPRLNERILSAMSKRSVAAHPWHDLEIG 339
            + S+S  AP P LNERILS+M++RSVAAHPWHDLEIG
Sbjct:   10 KSSDSHCAPHPPLNERILSSMTRRSVAAHPWHDLEIG 46

HSP 4 Score: 45.0542 bits (105), Expect = 1.575e-62
Identity = 28/64 (43.75%), Postives = 30/64 (46.88%), Query Frame = 3

Query:  369 GSEAPTVFNCVSLY*LDMEMAKFPCMHY*LFGCWIPCSTVQVVEISKGSKVKYELDKKTGMIKV 560
            G  APTVFNCV                               +EI KGSKVKYELDKKTG+IKV
Sbjct:   46 GPGAPTVFNCV-------------------------------IEIGKGSKVKYELDKKTGLIKV 78

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
IPYR2_CHLRE	3.842e-35	37.42	Soluble inorganic pyrophosphatase 2 OS=Chlamydomon...	[more]
IPYR_LEPIN	1.998e-20	34.48	Inorganic pyrophosphatase OS=Leptospira interrogan...	[more]
IPYR_LEPIC	1.998e-20	34.48	Inorganic pyrophosphatase OS=Leptospira interrogan...	[more]
IPYR_THEEB	4.169e-18	65.71	Inorganic pyrophosphatase OS=Thermosynechococcus e...	[more]
IPYR_METTH	8.006e-18	35.00	Inorganic pyrophosphatase OS=Methanothermobacter t...	[more]
IPYR_PYRFU	5.472e-17	56.76	Inorganic pyrophosphatase OS=Pyrococcus furiosus (...	[more]
IPYR_METKA	9.338e-17	64.86	Inorganic pyrophosphatase OS=Methanopyrus kandleri...	[more]
IPYR_THELN	1.089e-16	51.35	Inorganic pyrophosphatase OS=Thermococcus litorali...	[more]
IPYR_SYNY3	1.394e-16	60.00	Inorganic pyrophosphatase OS=Synechocystis sp. (st...	[more]
IPYR_THEAC	2.175e-16	66.67	Inorganic pyrophosphatase OS=Thermoplasma acidophi...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0097170 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A078EQX0_BRANA	3.544e-65	51.61	BnaA02g20410D protein OS=Brassica napus GN=BnaC02g...	[more]
B9SZJ2_RICCO	3.746e-65	63.68	Putative uncharacterized protein (Fragment) OS=Ric...	[more]
W1P0M0_AMBTC	4.208e-65	48.31	Uncharacterized protein OS=Amborella trichopoda GN...	[more]
A0A067HFJ1_CITSI	1.360e-64	51.61	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]
A0A059C0M9_EUCGR	7.337e-64	51.61	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
G8A0L7_MEDTR	8.651e-64	49.03	Soluble inorganic pyrophosphatase OS=Medicago trun...	[more]
A0A059A7C8_EUCGR	1.033e-63	47.62	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A059CK48_EUCGR	1.362e-63	50.97	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A072TMB0_MEDTR	1.445e-63	49.03	Soluble inorganic pyrophosphatase OS=Medicago trun...	[more]
A0A0B0Q0H5_GOSAR	1.575e-62	48.21	Soluble inorganic pyrophosphatase OS=Gossypium arb...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..175
None	No IPR available	PANTHER	PTHR37200:SF1	SUBFAMILY NOT NAMED	coord: 87..434
None	No IPR available	PANTHER	PTHR37200	FAMILY NOT NAMED	coord: 87..434
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 21..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..503
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..23 score: 0.535
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 199..281 e-value: 7.3E-4 score: 28.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 200..267 e-value: 9.8E-5 score: 22.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 198..285 score: 10.326
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 165..269 e-value: 2.3E-8 score: 33.4
IPR012677	Nucleotide-binding alpha-beta plait domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 192..272

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097170 ID=g.barbadense_cottongen_reftransV1_0097170; Name=g.barbadense_cottongen_reftransV1_0097170; organism=Gossypium barbadense; type=contig; length=3431bp
ACTCATTATATCCCAGAACTAAGTTTTACCATGTGGAGAAAATAGTTGCT
TTTTTTGCTGATCTTTGTGTTGTATTTTATTGATGGAGCAACCTTCATAC
ATATCAAAGGTACTGTAAAGTTTTATAATATACTCATAAGCATAAACCCC
TGTTTTATGCAACATGGTGGACTGAATTTGATTGAATGTTGATGCATTTT
ATTCTATTCTGGAAAAAATAAAATAAAAAGGATGAGTGAATCGACTGAAG
CTCCACGCCCCCGTCTAAATGAGAGGATCCTATCGGCTATGTCAAAGAGA
TCGGTAGCTGCACATCCATGGCATGATCTTGAGATTGGTACCACATATTG
CAATATATGTTGTGTGCAGGATCTGAAGCTCCAACCGTTTTCAATTGTGT
AAGCCTTTATTGACTGGACATGGAAATGGCGAAGTTTCCATGCATGCACT
ACTAATTGTTCGGTTGTTGGATTCCTTGTTCAACTGTACAGGTTGTGGAG
ATATCAAAAGGCAGTAAGGTGAAATATGAACTTGACAAAAAGACCGGAAT
GATTAAGGTACCTTTAGACATGTTGGTGAGGCATATACCTCGCAGGATAA
GGCAAGGCTTTTCCCTTTCTTGTATTGATGAGTTTAAATGAATCCCAGGT
TGATCGGATTTTGTATTCCTCAGTAGTCTATCCTCACAATTATGGTTTCA
TCCCTCGCACGCTATGCGAAGACAATGATCCCATGGATTGTTTGGTTATC
ATGCAGGTGAACCACCTTATCTCATTTTCTTCTCTCCATCTCTACCTTAT
ATGTTGATGGACTATTTATGTCATATGTTGGAATAGGAGCCAGTTCTTCC
TGGATGTTTTCTGCGAGCCAGAGCCCTTGGACTGATGCCCATGATTGACC
AGGTATTTCATTGAAGTTCAAAGAAGCTAACCTTTTCAGACTTCTTCCCT
CGAGTTTGTGTCATTAACTACTTCATTGTTGTCACTCAGGGGGAGAAAGA
TGATAAGATCATTGCAGTTTGTGCAGATGATCCAGAATACAAACATTTCA
CCGATATCAAAGATCTTCCCCCTCATCGCCTTACCGAGATCCGCCGTTTC
TTTGAAGATTGTATCCTTTTCCAACTTAAACCATACAACAGTTTTGTTTG
CTTAATGAAACAACATTACATCTTACTTCCCAATGTCAGGAAATACTGAT
TTCCTAACCATTTCACAGACAAGAAAAATGAGAACAAGGAGGTTGCAGTC
AATGATATTTTACCTGTAAACACAGCTATTGAAGCCATCCAGTATTCAAT
GTATGCCTCTTCCTTAAAAGAATGCCATCATAGAAGGGAATTCCTAAGTC
TAAATCTGATGGACAGTCCCCTTGCTCTACAATTATTAGTCAGTGTTGTT
CTTTTTGGTTCTATATCTGATTAAGGGTTTCATGTTGCTATGGCAGGGAC
CTTTACAACGAGTACATTATACAAACACTGAAGCAATAGGCTCAAAAACG
GCTATTTTCCATTCATTCATGGAGGGAAACTGCATCATACTAAATAAAAG
CATCTTATCGACCGCGGTTGAATGAGAATGATAGCCCCATTGATTACATT
TCTTTTTGTAGTTTCAAATGATTGTTATCATCATCATTATAATTATTTTC
ATTGCTCATTGGATTAAAATCTCTTGTGAAAAGAAGTGATAAAAAAGAAT
GTATAAGTTTTTACTAGAACTAGTAAAATATCAAATTCTCTTACACATTT
GCTGCTTACTACGACTCTTCCTTGGAATTCGAAGGAGTTTTCAACCCATA
TTTGGAGAAGGCCCCTGTTAGCTGTGCCTTTTCCTTAATCTTTAACCTCT
TCGCAGATCCTGGAATATCGAGCTTTTGAACCTTTTGCTCTTTCGTAACT
TTTTGTTGGTTTTGTTTAGCAACTACCTTTTTCTTATTATTAGACCCAAA
TCTTTCTAGCTTTTGACCTTTTTGTTCTTTTGGAACTCTTTGCTGTTTCC
CTCTTGCAAGTAGCTTTTGCTCAAGAGCCCTAATTCGTTCCAGCGGAGTT
AAGGCGATCAAATCAGCAGCTGCACGCTTAAACCTCGGTTCCATGATATC
AGCAGTACTTGCCTCTGCTTCACTAATAGCATTAAGATTGTTTCTACCTT
CTCCTACTTCTACTTCATCAAACTCATCATCTTGGTCATCAAATTCATCA
GATACAAGCTCATCATCCAGATCATCAAATTCATCAGATACAAGTTCATC
ATCATGGTCGTCAACTTCATCAGATACACTTTCCAATGATAAATCTGAGG
AAGAGTTCTTCATATCGAAATTAGCATTCGGACCATCTACGAAGTGAGAA
ATTGCCACTTCATCTGTGATGGATCCATTGTCCCACAATTCTTCATGAGC
AGGACTGTGCGAAAGTGAATTTATCATCTCACATTTTATTTGCTTCTGAA
TCCTACCAAAGGTGAGATTATGTCCAGAGAAAATTTGCACAAACCTAATT
GCATCCACCTCATGCTTAAATTCAACGAAGGCAAAACCTTTGCAAACAGG
GTCTTTAGTCTTCTTATTCCCAGAAACAGCTGGAGATATATTAATTATCC
CAGAAACCCCATCGAAAGCAGCTTTCAAATCCCTGTGAATGTTCTTTTTC
TTAGGAAGATTGCCCACTCTCACACGAATTCCACTTGGAACACTTTCAGC
TTTCTTGTTTTGCTGATCACCTTTCTTGGAACCAGGCTTGACAGGATTGT
TTTTAAGGTTGTTGACATTAACCGTTTGTGCTTGTCTGCTTTGCTCTATT
TCTTCAAGCAGTTTTTCTTCAATAGAAGTATCGTACACTTTCCCTTCACC
GAACCCACGGGGCTTGTTCTCGAGCCACTTCTTCATTTTACCAAGCGGAA
GAAACATGGCCTCATCGCCGTCCTCATCGTCGTCGTCGAATTCATCATCA
AAATCAATGAATTCGTCGCCGTCGTTGTCCTCGTCAGAACCACCCATTTC
GAAGAGGGTAGTGCCACCGCCGCCTTTTCTTCCTTTGTTAAAAGCAGAAG
CCCGCAATCTATTGGAATCTATATTAGGGAAAACAGAAAGAGAAGGGAAA
TGGGCTGATTGGGAAAGTAGAAGCAAAGAAGAAGAGAGAAAGATAGTGGC
TGTGTTCTTCGGGATATGAGCGTGGTAGCTTCTGCTGCTGCTGCCGCCAT
TGGCAAAGTGAAGAGGAGTAAAGAGAAACGTCGAACTAGAAAATGAAGAC
ATTCCCATCGTCTTCATCATCTTCCAGAGTTCCACTTTATCTATCTACTT
GTATTCCTCGAATCCAATATATCCCTCTCTTAGAGAGCTTACATGGATAT
TATCTTCTTACTGGACTTCTTTTTCTTTTCCGAAATCATCTTTAACTGGA
CTTGAATATTTCGGTAAAAAGAAATTTCCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

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g.barbadense_cottongen_reftransV1_0097170, g.barbadense_cottongen_reftransV1_0097170 (contig) Gossypium barbadense

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