g.barbadense_cottongen_reftransV1_0097169, g.barbadense_cottongen_reftransV1_0097169 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy Swiss-Prot
Match: BEH4_ARATH (BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 2.019e-78 Identity = 179/264 (67.80%), Postives = 201/264 (76.14%), Query Frame = -1 Query: 3 FLQGC-KPVERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNGDVNSLFPWLKNLXXXXXXXXXS--KRP-YSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQHSFLPSSTPPSPGRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFGFKEE----VLAGGGSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVIS-DEFAFGSNATGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GC +PVERM+I GGSAT SPCSSY PSP ASYNPSP SS+F SPASSS+ +GD SL PWLK+LS+ SSS++SS + P Y YI GGSISAPVTPPLSSPTARTPRM DW+ + +SF SSTPPSP RQI+PD EWFSG+Q S P SPTFSLVS NPFGFKEE GGGSRMWTPGQSGTCSPAI G+D TADVPMSE ++ EFAFGSN GLVK WEGERIHE+ GSDDLELTLG+S T Sbjct: 70 YRKGCSRPVERMEIGGGSATASPCSSYQPSPCASYNPSPGSSNFMSPASSSFANLTSGDGQSLIPWLKHLSTTSSSSASSSSRLPNYLYIPGGSISAPVTPPLSSPTARTPRMNTDWQQLN---------NSFFVSSTPPSPTRQIIPDSEWFSGIQLAQSVPASPTFSLVSQNPFGFKEEAASAAGGGGGSRMWTPGQSGTCSPAIPPGADQTADVPMSEAVAPPEFAFGSNTNGLVKAWEGERIHEESGSDDLELTLGNSST 324
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy Swiss-Prot
Match: BZR2_ORYSJ (Protein BZR1 homolog 2 OS=Oryza sativa subsp. japonica GN=BZR2 PE=2 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 1.807e-62 Identity = 159/268 (59.33%), Postives = 193/268 (72.01%), Query Frame = -1 Query: 3 FLQGCKPVERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNG-----DVNSLFPWLKNLXXXXXXXXXSKRPYSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQHSFLPSSTPPSPGRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFG-FKEEVLAGGG-SRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSN------ATGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +G KP ERM+++G S + SPCSSY PSPRASYN SP SSSFPS ASS ++ +PN D N + PWLK LS++ SS + P IHGGSISAPVTPPLSSPTARTPRMK DW++ +V P W+ + +STPPSPGR ++PDP W +G+Q + P+SPTFSLVSSNPF FK+ +L G SRM TPGQSGTCSPAI + H D+ M + +SDEFAFGS+ A GLV+ WEGERIHED GSDDLELTLGSS+T Sbjct: 95 YRKGYKPPERMEVIGCSVSPSPCSSYQPSPRASYNASPTSSSFPSGASSPFLPHPNNMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTARTPRMKTDWDESNVQPTWTGSNSPCVVNSTPPSPGRTMLPDPAWLAGIQISSTSPSSPTFSLVSSNPFSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMAPH-PDIHMMDAVSDEFAFGSSTNGGHQAAGLVRAWEGERIHEDSGSDDLELTLGSSRT 361
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy Swiss-Prot
Match: BZR3_ORYSJ (Protein BZR1 homolog 3 OS=Oryza sativa subsp. japonica GN=BZR3 PE=2 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 9.099e-61 Identity = 156/272 (57.35%), Postives = 190/272 (69.85%), Query Frame = -1 Query: 3 FLQGCKP--VERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNGDV------NSLFPWLKNLXXXXXXXXXSKRP---YSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQHSFLPSSTPPSPGRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFGFKEEVLAGGGSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSNAT------GLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GCKP ER D +G SA+ SPCSSY PSPRASYNPSPASSSFPS SSS++ + +SL PWLK L +SS ASSSK P + Y +GGSISAPVTPP SSPT RTPR++ DWE+ SV P W++ ++ LP+STPPSPG +I PDP W SG Q + P+SPT++LVS NPFG +E +A SR+ TPGQSGTCSP + H DV M + D+FAFGS++ GLVK WEGERIHE+C SD+LELTLGSSKT Sbjct: 82 YRKGCKPPQAERPDPIGRSASPSPCSSYQPSPRASYNPSPASSSFPSSGSSSHITIGGNSLIGGVEGSSLIPWLKTLPLSSSYASSSKFPQLHHLYFNGGSISAPVTPPSSSPT-RTPRLRTDWENASVQPPWASANYTSLPNSTPPSPGHKIAPDPAWLSGFQISSAGPSSPTYNLVSPNPFGIFKEAIA-STSRVCTPGQSGTCSPVMGGMPAH-HDVQMVDGAPDDFAFGSSSNGNNESPGLVKAWEGERIHEECASDELELTLGSSKT 350
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy Swiss-Prot
Match: BEH3_ARATH (BES1/BZR1 homolog protein 3 OS=Arabidopsis thaliana GN=BEH3 PE=1 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 2.413e-55 Identity = 130/259 (50.19%), Postives = 156/259 (60.23%), Query Frame = -1 Query: 3 FLQGCKPVERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNGDVNSLFPWLKNLXXXXXXXXXSKRPYSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQHSFLPSSTPPSPGRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFGFKEEVLAGG-GSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSN---ATGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GCKP++RMD++ GS + SPCSSY ++P + + PS +S NP GD NSL PWLKNL SS S SK P + HG SISAPVTPPL AR+P DQ +PD W SG+QTP S P+SPTFSLVS NPF KE G S MWTPGQSG CSPAI AG D +DVPM++ ++ EFAFG N A G+VKPWEGERIH +C SDDLELTLG+S+T Sbjct: 70 YRKGCKPMDRMDLMNGSTSASPCSSYQ------HSPRASYNPSPSSSSFPSPTNPFGDANSLIPWLKNL----SSNSPSKLP--FFHGNSISAPVTPPL----ARSPT-----RDQVT------------------------IPDSGWLSGMQTPQSGPSSPTFSLVSRNPFFDKEAFKMGDCNSPMWTPGQSGNCSPAIPAGVDQNSDVPMADGMTAEFAFGCNAMAANGMVKPWEGERIHGECVSDDLELTLGNSRT 283
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy Swiss-Prot
Match: BZR4_ORYSJ (Protein BZR1 homolog 4 OS=Oryza sativa subsp. japonica GN=BZR4 PE=3 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.715e-33 Identity = 128/289 (44.29%), Postives = 152/289 (52.60%), Query Frame = -1 Query: 3 FLQGCKP--VERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNGDVNSLFPWLKNLXXXXXXXXXS---KRP--YSYIHGGSISAPVTPPLSSPTARTPRMKND-WEDQ------SVLPGWSA-------QQHSFLPSSTPPSPGRQIVPDPE----------WFSGLQTPHSRPTSPTFSLVSSNPFGFKEEVLAGGGSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSNA---TGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GCKP E D +G S + SPCSSY PSPR + + + SS G+ +SL PWLK LSSA K P YSY GGSISAPVTPP SP RTPR+K WE+ SVLP W+ S LP+STPPSP R++ W +G Q + P+SPT+SLV+ P F A G S SG CSP +A G DV M++ EFAFG TGLVK WEGERIHE+CGSDDLELTLGSS T Sbjct: 73 YRKGCKPPASELADQLGRSPSASPCSSYQPSPRGTSSFPSSGSSSQIT----LGGGGGGEGSSLIPWLKTLSSAGVGIGGGSSSKFPAHYSYFGGGSISAPVTPPSGSP-PRTPRLKTAAWEEYHHHHAGSVLPPWATVGASYAYAASSSLPNSTPPSPRRKVAAAAAAAGGGNDAAAWLAGFQISSAGPSSPTYSLVAPPPNPFGAAAAAAGSSSRV---MSGACSP-VAGG-----DVQMADAARREFAFGGEGGKMTGLVKAWEGERIHEECGSDDLELTLGSSMT 347
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy TrEMBL
Match: I1M2X7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 2.535e-96 Identity = 193/256 (75.39%), Postives = 217/256 (84.77%), Query Frame = -1 Query: 3 FLQGCKPVERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNGDVNSLFPWLKNLXXXXXXXXXSKRPYSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQH-SFLPSSTPPSPGRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFGFKEEVLAGGGSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSNATGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GCKP+ERMDIVGGS+ SPCSSYHPSP ASYNPSP SSSFPSP+SS Y PN D NSL PWLKNLS+ASSSASS K P+ Y+H GSISAPVTPPLSSPT+RTPR+ +W++QS PGW+ QQH SFLPSS+PPSPGRQ+V DPEWF+G++ PH PTSPTFSLVSSNPF FKE+ L G GSRMWTP QSGTCSPAI GSD AD+PMSE +SDEFAFGSN GLVKPWEGERIHE+ GSDDLELTLG+SKT Sbjct: 70 YRKGCKPLERMDIVGGSSAASPCSSYHPSPCASYNPSPGSSSFPSPSSSPYTQIPNADGNSLIPWLKNLSTASSSASSPKLPHLYLHSGSISAPVTPPLSSPTSRTPRINVEWDEQSARPGWTRQQHYSFLPSSSPPSPGRQVV-DPEWFAGIKLPHVSPTSPTFSLVSSNPFAFKEDGLPGSGSRMWTPAQSGTCSPAIPPGSDQNADIPMSEAVSDEFAFGSNTLGLVKPWEGERIHEEFGSDDLELTLGNSKT 324
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy TrEMBL
Match: A0A0B2RWT2_GLYSO (BES1/BZR1 like protein 4 OS=Glycine soja GN=glysoja_001649 PE=4 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 2.733e-96 Identity = 193/256 (75.39%), Postives = 217/256 (84.77%), Query Frame = -1 Query: 3 FLQGCKPVERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNGDVNSLFPWLKNLXXXXXXXXXSKRPYSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQH-SFLPSSTPPSPGRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFGFKEEVLAGGGSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSNATGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GCKP+ERMDIVGGS+ SPCSSYHPSP ASYNPSP SSSFPSP+SS Y PN D NSL PWLKNLS+ASSSASS K P+ Y+H GSISAPVTPPLSSPT+RTPR+ +W++QS PGW+ QQH SFLPSS+PPSPGRQ+V DPEWF+G++ PH PTSPTFSLVSSNPF FKE+ L G GSRMWTP QSGTCSPAI GSD AD+PMSE +SDEFAFGSN GLVKPWEGERIHE+ GSDDLELTLG+SKT Sbjct: 70 YRKGCKPLERMDIVGGSSAASPCSSYHPSPCASYNPSPGSSSFPSPSSSPYTQIPNADGNSLIPWLKNLSTASSSASSPKLPHLYLHSGSISAPVTPPLSSPTSRTPRINVEWDEQSARPGWTRQQHYSFLPSSSPPSPGRQVV-DPEWFAGIKLPHVSPTSPTFSLVSSNPFAFKEDGLPGSGSRMWTPAQSGTCSPAIPPGSDQNADIPMSEAVSDEFAFGSNMLGLVKPWEGERIHEEFGSDDLELTLGNSKT 324
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy TrEMBL
Match: V4W957_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015910mg PE=4 SV=1) HSP 1 Score: 304.294 bits (778), Expect = 1.810e-93 Identity = 185/257 (71.98%), Postives = 212/257 (82.49%), Query Frame = -1 Query: 3 FLQGCKPVERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNG--DVNSLFPWLKNLXXXXXXXXXSKRPYSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQHSFLPSSTPPSPGRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFGFKEEVLAGGGSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSNATGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GCKPVE MD++GGSA+ S CSSY SP ASYNPSP SSSFPSP SS Y + NG D NSL PWLKNLSS+SSSASS + YIHGGSISAPVTPPLSSPT RTPR KNDW++ + + W+ Q + FLPSSTPPSPGRQ++PD W SG+Q P S P+SPTFSLVS NPFGF+EEVL+GG SRMWTPGQSGTCSPA+ AG D+T+DVPMS+ I+ EFAFG NATGLVKPWEGERIHE+C SDDLELTLG+SKT Sbjct: 70 YRKGCKPVEYMDVMGGSASASACSSYQQSPCASYNPSPGSSSFPSPRSSHYTPHANGSADANSLIPWLKNLSSSSSSASSKDPHHMYIHGGSISAPVTPPLSSPTCRTPRTKNDWDEPTAVAAWAGQHYPFLPSSTPPSPGRQVLPDSGWLSGIQIPQSGPSSPTFSLVSRNPFGFREEVLSGGPSRMWTPGQSGTCSPAVPAGVDNTSDVPMSDCIATEFAFGCNATGLVKPWEGERIHEECVSDDLELTLGNSKT 326
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy TrEMBL
Match: A0A067GE96_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020318mg PE=4 SV=1) HSP 1 Score: 304.294 bits (778), Expect = 1.810e-93 Identity = 185/257 (71.98%), Postives = 212/257 (82.49%), Query Frame = -1 Query: 3 FLQGCKPVERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNG--DVNSLFPWLKNLXXXXXXXXXSKRPYSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQHSFLPSSTPPSPGRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFGFKEEVLAGGGSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSNATGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GCKPVE MD++GGSA+ S CSSY SP ASYNPSP SSSFPSP SS Y + NG D NSL PWLKNLSS+SSSASS + YIHGGSISAPVTPPLSSPT RTPR KNDW++ + + W+ Q + FLPSSTPPSPGRQ++PD W SG+Q P S P+SPTFSLVS NPFGF+EEVL+GG SRMWTPGQSGTCSPA+ AG D+T+DVPMS+ I+ EFAFG NATGLVKPWEGERIHE+C SDDLELTLG+SKT Sbjct: 70 YRKGCKPVEYMDVMGGSASASACSSYQQSPCASYNPSPGSSSFPSPRSSHYTPHANGSADANSLIPWLKNLSSSSSSASSKDPHHMYIHGGSISAPVTPPLSSPTCRTPRTKNDWDEPTAVAAWAGQHYPFLPSSTPPSPGRQVLPDSGWLSGIQIPQSGPSSPTFSLVSRNPFGFREEVLSGGPSRMWTPGQSGTCSPAVPAGVDNTSDVPMSDCIATEFAFGCNATGLVKPWEGERIHEECVSDDLELTLGNSKT 326
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy TrEMBL
Match: B9S8F2_RICCO (BRASSINAZOLE-RESISTANT 2 protein, putative OS=Ricinus communis GN=RCOM_1252040 PE=4 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 1.118e-91 Identity = 185/261 (70.88%), Postives = 210/261 (80.46%), Query Frame = -1 Query: 3 FLQGCKPVERMDIVGGSATVSPCSSYHXXXXXXXXXXXXXXXXXXXXXXSYVVNPNG--DVNSLFPWLKNLXXXXXXXXXSKRPYSYIHGGSISAPVTPPLSSPTARTPRMKNDWEDQSVLPGWSAQQHSFLPSSTPPSP----GRQIVPDPEWFSGLQTPHSRPTSPTFSLVSSNPFGFKEEVLAGGGSRMWTPGQSGTCSPAIAAGSDHTADVPMSEVISDEFAFGSNATGLVKPWEGERIHEDCGSDDLELTLGSSKT 767 + +GCKPVERMDI+GGSA+ SPCSSYHPSP ASYNPSP SSSFPSP SS Y N NG D NSL PWLKNLSS SSSASS + YIH GSISAPVTPPLSSPT+RTPR KNDW+D + P W+ Q + FLPSS P S GRQ++PD W +G+Q P S P+SPTFSLVS NPFGF++E L+G GSRMWTPGQSGTCSPA+ AG DHTADVPM++ ++ EFAFGSN TGLVKPWEGERIHE+C SDDLELTLG+S T Sbjct: 70 YRKGCKPVERMDIMGGSASASPCSSYHPSPCASYNPSPGSSSFPSPVSSRYTANTNGNADANSLIPWLKNLSSGSSSASSKHPHHLYIHTGSISAPVTPPLSSPTSRTPRTKNDWDDPAAGPSWAGQNYPFLPSSMPSSTPPSPGRQVLPDSGWLAGIQIPQSGPSSPTFSLVSRNPFGFRDEPLSGAGSRMWTPGQSGTCSPAVPAGVDHTADVPMADSMAAEFAFGSNTTGLVKPWEGERIHEECVSDDLELTLGNSST 330 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 5
BLAST of g.barbadense_cottongen_reftransV1_0097169 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097169 ID=g.barbadense_cottongen_reftransV1_0097169; Name=g.barbadense_cottongen_reftransV1_0097169; organism=Gossypium barbadense; type=contig; length=2033bpback to top |