g.barbadense_cottongen_reftransV1_0097168, g.barbadense_cottongen_reftransV1_0097168 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097168
Unique Name	g.barbadense_cottongen_reftransV1_0097168
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2211

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: YMB8_YEAST (Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.199e-20
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = -3

Query:  326 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDK 736
            + +Y+ LLK+  G E  +V+M+ FFG+VGLF LL LW  +  L+  G EP F+ P    V   + +N  + + +SD+ WA +++ T+PL  T+G+S+TIPLAM  D+I   +  SA+Y+FG   +   F I N S +
Sbjct:  237 YGVYSTLLKREVGDE-TRVNMKIFFGFVGLFNLLFLWPSLIVLDFFGWEP-FSLPKDPKVVVIIFVNCLI-TFVSDFCWAKAMLLTSPLTVTVGLSITIPLAMFGDVIFKHKTMSALYLFGATLILGSFFIINKSSE 370

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: THI74_YEAST (Thiamine-repressible mitochondrial transport protein THI74 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI74 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 52/133 (39.10%), Postives = 79/133 (59.40%), Query Frame = -3

Query:  338 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIAN 736
            +S+Y  LLK    S+G ++D+Q F GYVG+FT L  W ++  L++  +E  F  P +  +   V+LN  +  V SDYFW  +++ T+PLV T+ ++ TIPLAM AD +     F+  YI G I +F  F + N
Sbjct:  218 YSVYTTLLKYEISSKGLRLDIQMFLGYVGIFTFLLFWPILIILDITHMET-FELPSNFHISFLVMLNCIIIFV-SDYFWCKALILTSPLVVTVALTFTIPLAMFADFVWREAFFTPWYIIGVIFIFVSFFLVN 348

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_BOVIN (Solute carrier family 35 member F5 OS=Bos taurus GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.647e-18
Identity = 53/134 (39.55%), Postives = 83/134 (61.94%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F IA +
Sbjct:  341 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLMCIVINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIATL 471

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_MACFA (Solute carrier family 35 member F5 OS=Macaca fascicularis GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.591e-18
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F I  +
Sbjct:  249 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTL 379

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_PONAB (Solute carrier family 35 member F5 OS=Pongo abelii GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.062e-17
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F I  +
Sbjct:  340 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTL 470

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_HUMAN (Solute carrier family 35 member F5 OS=Homo sapiens GN=SLC35F5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.091e-17
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F I  +
Sbjct:  340 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLMCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTL 470

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: S35F5_MOUSE (Solute carrier family 35 member F5 OS=Mus musculus GN=Slc35f5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.556e-17
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = -3

Query:  335 WSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANV 736
            +++Y V++K+    E +K+D+  FFG+VGLF LL LW   + L+  G E  F FP+   V   +++NG +G+VLS++ W      T+ L+ TL +SLTIPL+++ADM +    FS ++  G I VF  F I  +
Sbjct:  341 YAVYIVMIKRKVDRE-DKLDIPMFFGFVGLFNLLLLWPGFFLLHYTGFED-FEFPNKV-VLLCIIINGLIGTVLSEFLWLWGCFLTSSLIGTLALSLTIPLSIIADMCMQKVQFSWLFFAGAIPVFFSFFIVTL 471

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Match: YGF3_SCHPO (Uncharacterized transporter C405.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC405.03c PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.501e-16
Identity = 50/134 (37.31%), Postives = 84/134 (62.69%), Query Frame = -3

Query:  326 YAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDK 727
            Y+V++K    +E   V  + FFG VGLF L+ LW  +  L++ G+E  F+ P S + G  VL+     + +SDY W ++++ T+PL+ T+GMSL+IPLA+  D+++ G + +   I G + VFAGF++ N + +
Sbjct:  208 YSVMVKFHI-TEESCVSTRLFFGLVGLFDLILLWPFLIILHLYGVER-FSLP-STTAGLIVLIINASITFVSDYLWVIAMLMTSPLLVTVGMSLSIPLALFFDILLKGHYLNFSLILGSLLVFAGFIVVNYNQQ 338

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: V4WAW2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008500mg PE=4 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 3.238e-82
Identity = 139/206 (67.48%), Postives = 157/206 (76.21%), Query Frame = -3

Query:  290 SRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL*QVVL 907
            S +RRH+I G+IFGLLSAI+YGLFT                                     VLLKKSAGSEG+KVD+QKFFGY+GLFT LGLWWL+WPLN  GIEPPF FPHS SVGE +LLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLT+PLAMVADM+IHGRH+SA+YIFGC+QVFAGF+IAN+SDKFS K +L Q+ L
Sbjct:  230 SESRRHNITGDIFGLLSAITYGLFT-------------------------------------VLLKKSAGSEGDKVDVQKFFGYIGLFTFLGLWWLIWPLNAAGIEPPFRFPHSQSVGEVLLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTMPLAMVADMVIHGRHYSAIYIFGCLQVFAGFIIANLSDKFSAKIELLQMKL 398

HSP 2 Score: 262.307 bits (669), Expect = 5.442e-76
Identity = 153/231 (66.23%), Postives = 180/231 (77.92%), Query Frame = -1

Query: 1141 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGL------NELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1815
            MG KY AGLGLI   V IW+ SAE+TQ+IF+EY+QPFALTYLGVSLMV+YLP+ALL+D  C+L + N+++NL+   S+  TS GL      NEL  S E D +  L+T KDLSEREEG PL + ++KD P + +     SSW  AKCSLYLTPIWF TEY SNSALANTSVASTTVLTSTSGLFTLFFGALL QDS+ +AK+VAVFISM GVAMTT+GKTWA+DE LS SE
Sbjct:    1 MGWKYQAGLGLIGAFVLIWITSAEITQKIFTEYRQPFALTYLGVSLMVIYLPVALLRDCFCSLLDKNIFKNLFGNRSLTSTSTGLDIPLKSNELNNSLETDPRSSLMTGKDLSEREEGWPLIAKSDKDEPHVLEQRSELSSWAIAKCSLYLTPIWFITEYFSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDSLTIAKLVAVFISMAGVAMTTVGKTWAADEFLSASE 231

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: B9HB79_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s28220g PE=4 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.209e-78
Identity = 158/232 (68.10%), Postives = 179/232 (77.16%), Query Frame = -1

Query: 1141 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELP-------QSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1815
            MG KY AGLGLI+TVV IWV SAEVTQRIF  YKQPFA+TYLGVSLMVVYLPIAL++DW C+LFN+ L  NLY G+SVI ++IGLN  P          E+DL+ CLITDKD+ E  EG PLN   ++D P+L        SWE  KCSLYL PIWF TEYLSNSALANTSVASTTVLTSTSGLFTL FGA+L Q+++N AKVVAVFI+M GVAMTT+GKTWA DE  S SE
Sbjct:    1 MGWKYKAGLGLISTVVIIWVTSAEVTQRIFEMYKQPFAITYLGVSLMVVYLPIALVRDWFCSLFNSGLSMNLYSGNSVIASTIGLNIPPLRVNDMNDDPESDLRGCLITDKDIGEEGEGWPLNVKDKEDEPNLLQQNSELCSWEICKCSLYLAPIWFITEYLSNSALANTSVASTTVLTSTSGLFTLLFGAVLGQETINFAKVVAVFITMAGVAMTTVGKTWARDEASSFSE 232

HSP 2 Score: 229.18 bits (583), Expect = 7.565e-64
Identity = 134/201 (66.67%), Postives = 149/201 (74.13%), Query Frame = -3

Query:  305 SRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 907
            S  RRHSI+G+IFGL SAISY LFT                                     VLLKK AGS+G K+D+QK FGY+GLFTLLGLWWL+WPLN  GIEP F+FPHS SVGE VLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAM+ADM+IHGR +SA+YIFGCIQVFAGF+IAN+SDKFS K +L
Sbjct:  231 SETRRHSIIGDIFGLFSAISYSLFT-------------------------------------VLLKKCAGSDGNKIDVQKCFGYIGLFTLLGLWWLLWPLNAAGIEPAFSFPHSWSVGEIVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMLADMVIHGRRYSAIYIFGCIQVFAGFIIANISDKFSVKREL 394

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: D7SV62_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g06890 PE=4 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.332e-78
Identity = 134/200 (67.00%), Postives = 150/200 (75.00%), Query Frame = -3

Query:  308 SRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQ 907
            S +R+HSI+G+IFGLLSA+SYGLFT                                     VLLK+SAGSEG+K D+QKFFGY+GLFTLLG WWL WPLN VGIEP F  PHS S+GE VLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAM+ADM+IHGR +SAVYIFGCI+VFAGFVIAN+SDKFS K +
Sbjct:  229 SESRKHSIIGDIFGLLSAVSYGLFT-------------------------------------VLLKRSAGSEGDKADVQKFFGYIGLFTLLGFWWLAWPLNAVGIEPQFKLPHSTSIGEVVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMIADMMIHGRGYSAVYIFGCIEVFAGFVIANLSDKFSPKAE 391

HSP 2 Score: 255.373 bits (651), Expect = 2.083e-73
Identity = 158/231 (68.40%), Postives = 179/231 (77.49%), Query Frame = -1

Query: 1141 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGL------NELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1815
            MG KY AGLGLI TVVFIWV SAE+TQRIFSEYKQPFALTYLGVSLMVVYLPIA+LKDWIC+  + N ++NL +GS++  +S GL      NE+  S+E D +  L TD DLSE E+G  + ++ E D   L +     SSWE AKC  YL PIWF TEY SNSALANTSVASTTVLTSTSGLFTLFFGALL QD+VN+ KVVAVFISM GVAMTT+GKTWA DEMLS SE
Sbjct:    1 MGWKYKAGLGLIGTVVFIWVASAEITQRIFSEYKQPFALTYLGVSLMVVYLPIAVLKDWICSRLDINSFKNLCNGSTIAKSSAGLAIPLRINEICPSSETDTESSLNTDMDLSENEDGWLIITNME-DEVGLLEKNHELSSWEIAKCGFYLAPIWFITEYSSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDTVNITKVVAVFISMAGVAMTTVGKTWAPDEMLSASE 230

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: M5XDR2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008824mg PE=4 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.533e-77
Identity = 138/207 (66.67%), Postives = 151/207 (72.95%), Query Frame = -3

Query:  305 LFLLSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSE--GEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 919
            L  +S  R+HSI G+I GLLSA SYGLFT                                     VLLKK AGSE  G+KVD+QK FGYVGLFTLLGLWWLVWPLN +GI+P F  P S SVGE VLLNGF+GSVLSDYFWALSVVWT+PLVATLGMSLTIPLAMVADM+IHGRHFSAVYIFGCIQVFAGFV+AN+SDKFSRK +L
Sbjct:  148 LLSISETRKHSITGDICGLLSAASYGLFT-------------------------------------VLLKKFAGSEEEGDKVDVQKLFGYVGLFTLLGLWWLVWPLNAIGIKPSFELPQSKSVGEVVLLNGFMGSVLSDYFWALSVVWTSPLVATLGMSLTIPLAMVADMVIHGRHFSAVYIFGCIQVFAGFVMANLSDKFSRKEEL 317

HSP 2 Score: 147.132 bits (370), Expect = 1.486e-35
Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = -1

Query: 1141 IDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1581
            +D  + +NE+ QS E D+  C +TDKD S  EEG+PL + +E+D   L +     S WE AKC L LTPIWF TEYLSNSALANTSVASTTVLTSTSGLFTLFFGALL QDS+++ K+VAVF+SM GVAMTT G TWA DE+LS+SE
Sbjct:    7 LDIPLIINEMHQSPETDVTSCPVTDKDFSNTEEGRPLIAKSEEDESHLLERSDQLSPWEIAKCGLILTPIWFLTEYLSNSALANTSVASTTVLTSTSGLFTLFFGALLRQDSISIPKIVAVFVSMAGVAMTTAGNTWAPDELLSISE 153

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A0B0PKS9_GOSAR (Vacuolar membrane protein OS=Gossypium arboreum GN=F383_00932 PE=4 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 7.365e-74
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = -3

Query:  305 MQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 676
            MQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGE VL NGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL
Sbjct:    1 MQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEVVLFNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQL 124

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BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: B9RNS9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0920520 PE=4 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 9.171e-74
Identity = 153/228 (67.11%), Postives = 177/228 (77.63%), Query Frame = -1

Query: 1141 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSS---VIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1815
            MG +Y AGLGLI TVV IWV SAEVTQ IF +YKQPFALTY GVSLMVVYLPIAL+KDW   L    L++N Y  SS    +D  + +N++ Q+ E D++  L+TDKDLSEREEG P+    E++   L +H    SSWE AKCSLYL P+WF TEYLSNSALANTSVASTTVLTSTS LFTLFFGALL QDS+N AK+ AVFISM GVAMTT+GKTWA+DEMLS+SE
Sbjct:    1 MGWRYQAGLGLIGTVVLIWVASAEVTQNIFEKYKQPFALTYFGVSLMVVYLPIALVKDWFFGLVRTYLFKNKYSASSDGTGLDIPLRINDMQQAPENDMRSSLVTDKDLSEREEGWPVIVKEEEEVSSLLEHHCELSSWEVAKCSLYLAPVWFITEYLSNSALANTSVASTTVLTSTSALFTLFFGALLGQDSINAAKLAAVFISMAGVAMTTVGKTWAADEMLSISE 228

HSP 2 Score: 251.521 bits (641), Expect = 4.910e-72
Identity = 133/213 (62.44%), Postives = 145/213 (68.08%), Query Frame = -3

Query:  305 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCI-----------QVFAGFVIANVSDKFSRKPQL 910
            +S  RRHSI G+IFGL SAISYGLFT                                     VLLKK AGSEGEK D+QKFFGY+GLFTLLGLWWL++PL   GIEP F FP S  VGE VLLN FVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADM+IHGRH+SA+YI GC            QVFAGF+IAN+SDKFS K +L
Sbjct:  226 ISETRRHSITGDIFGLFSAISYGLFT-------------------------------------VLLKKCAGSEGEKADVQKFFGYIGLFTLLGLWWLLFPLQAAGIEPQFTFPDSTFVGEEVLLNSFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMVIHGRHYSAIYILGCTQWTSINQLCWAQVFAGFIIANISDKFSMKREL 401

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A0A022Q319_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a008033mg PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.360e-72
Identity = 125/204 (61.27%), Postives = 146/204 (71.57%), Query Frame = -3

Query:  308 LFLLSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRKPQ 919
            +F ++  RRHSI G+IFGLLSA+ YGLFT                                     VLLK+SAGSEG+KVD+QKFFGY+GLFTL GLWWL WPLN +GIEP    P SAS+ E ++LNGFVGSVLSDY WALSVVWTTPLVATLGMSLTIP+AMVADM++H RH+S +YI GCIQVFAGFVIAN+SD+FS K +
Sbjct:  221 IFSVAETRRHSITGDIFGLLSAVFYGLFT-------------------------------------VLLKRSAGSEGDKVDVQKFFGYIGLFTLFGLWWLAWPLNALGIEPELKLPSSASITEIIVLNGFVGSVLSDYLWALSVVWTTPLVATLGMSLTIPIAMVADMLVHKRHYSVIYILGCIQVFAGFVIANISDRFSCKRR 387

HSP 2 Score: 192.971 bits (489), Expect = 5.830e-51
Identity = 123/226 (54.42%), Postives = 156/226 (69.03%), Query Frame = -1

Query: 1141 VMGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGLNELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1818
            +MG +Y AGL +I   V IWV SAE+TQ+IF+EY+QPFALTYL +SLMVVYLPIA+ +D I  L +    + +   +++  +   L+E     E  LK  L+T+  L+E E GQPL    ++D   + ++       E  KCSL+L P+WF TEYLSNSALA TSVASTTVLTSTSGLFTL FGAL+  +SVN AK+ AV ISM GVAMTT GKTWA DE+ SV+E
Sbjct:    1 MMGWRYRAGLCMIGAFVLIWVTSAEITQKIFTEYRQPFALTYLWISLMVVYLPIAMCRDLIYKLLDKKWIKEIISINNLSSSLARLDETDNDPEIALKSYLMTEMSLTETEAGQPLLFKNQEDENRVLENRHELGLREVIKCSLFLAPVWFITEYLSNSALAYTSVASTTVLTSTSGLFTLLFGALIGGESVNTAKIAAVLISMAGVAMTTFGKTWAPDEIFSVAE 226

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: A5BA13_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010103 PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.709e-72
Identity = 157/235 (66.81%), Postives = 180/235 (76.60%), Query Frame = -1

Query: 1141 VLGVMGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRNLYDGSSVIDTSIGL------NELPQSAEADLKRCLITDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDEMLSVSE 1827
            +L +MG KY AGLGLI TVVFIWV SAE+TQRIFSEYKQPFALTYLGVSLMVVYLPIA+LKDWIC   + N ++ L +GS++  +S GL      NE+  S+E D +  L TD DLSE E+G  + ++ E +   L +     SSWE AKC  YL PIWF TEY SNSALANTSVASTTVLTSTSGLFTLFFGALL QD+VN+ KVVAVFISM GVAMTT+GKTWA DEMLS SE
Sbjct:   16 LLSMMGWKYKAGLGLIGTVVFIWVASAEITQRIFSEYKQPFALTYLGVSLMVVYLPIAVLKDWICXRLDXNSFKXLCNGSTIAKSSAGLXIPLRINEICPSSETDTESSLNTDMDLSENEDGWLIITNMEDEVGXL-EKNHELSSWEIAKCGFYLAPIWFITEYSSNSALANTSVASTTVLTSTSGLFTLFFGALLGQDTVNITKVVAVFISMAGVAMTTVGKTWAPDEMLSASE 249

HSP 2 Score: 237.269 bits (604), Expect = 1.332e-66
Identity = 119/181 (65.75%), Postives = 133/181 (73.48%), Query Frame = -3

Query:  365 SRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQ 907
            S +R+HSI+G+IFGLLSA+SYGLFT                                     VLLK+SAGSEG+K D+QKFFGY+GLFTLLG WWL WPLN VGIEP F  PHS S+GE VLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAM+ADM+IHGR +SAVYIFGCI+
Sbjct:  248 SESRKHSIIGDIFGLLSAVSYGLFT-------------------------------------VLLKRSAGSEGDKADVQKFFGYIGLFTLLGFWWLAWPLNAVGIEPQFKLPHSTSIGEVVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMIADMMIHGRXYSAVYIFGCIE 391

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: W1PHI0_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00019p00070680 PE=4 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.140e-70
Identity = 123/195 (63.08%), Postives = 141/195 (72.31%), Query Frame = -3

Query:  326 LSRARRHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDK 910
            L  +  HSI+G++FGLLSAI+YGLFT                                     VLLK+ +G+EGEKVD+QK FGY+GLFT++ LWWLVWPL   GIEP F+ PHSASV EA+LLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADM+IHGRH+SA+YI G  QVF GFVIAN+SDK
Sbjct:    3 LGESGNHSIIGDVFGLLSAITYGLFT-------------------------------------VLLKRFSGAEGEKVDVQKLFGYIGLFTIVALWWLVWPLTAFGIEPKFSIPHSASVDEALLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMVIHGRHYSALYILGSAQVFTGFVIANLSDK 160

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Match: U5CW22_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00033p00202600 PE=4 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.718e-69
Identity = 122/194 (62.89%), Postives = 140/194 (72.16%), Query Frame = -3

Query:  314 RHSIMGNIFGLLSAISYGLFTGRLFSMHLN*ILT*SI*FGETASLLFCFIQSHWSIYAVLLKKSAGSEGEKVDMQKFFGYVGLFTLLGLWWLVWPLNVVGIEPPFAFPHSASVGEAVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRHFSAVYIFGCIQVFAGFVIANVSDKFSRK 895
            + S++G++FGLLSA++YGLFT                                     VLLKK +G+EGEK+D+QKFFGY+GLFTL+ LWWLVWPL  +GIEP F  PHSA + E +L NGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADM+IHGRHFSAVYI G  QVFAGFVIANVSD+ S K
Sbjct:  236 KRSLVGDLFGLLSAVTYGLFT-------------------------------------VLLKKFSGAEGEKIDVQKFFGYIGLFTLVALWWLVWPLTALGIEPKFTIPHSAKIDEVLLANGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMVIHGRHFSAVYILGSAQVFAGFVIANVSDRCSYK 392

HSP 2 Score: 195.282 bits (495), Expect = 1.252e-51
Identity = 129/227 (56.83%), Postives = 158/227 (69.60%), Query Frame = -1

Query: 1159 MGLKYNAGLGLIATVVFIWVVSAEVTQRIFSEYKQPFALTYLGVSLMVVYLPIALLKDWICNLFNANLYRN-----LYDGSSVIDTSIGLNELPQSAEADLKRCLI---TDKDLSEREEGQPLNSSTEKDGPDLPDHGGGTSSWETAKCSLYLTPIWFTTEYLSNSALANXXXXXXXXXXXXXXXXXXXXGALLSQDSVNVAKVVAVFISMTGVAMTTIGKTWASDE 1815
            MG KYNAGL LI T V IWV SAEVTQ+IF++Y+QPFALTYLG SLMVVYLPIA +KD  C L      ++       D S+ I + + L    +  E +++  L    ++ DLS +EEG+PL +   KD  D        ++ E AK S Y+ PIWF TEYLSN+ALA TSVASTTVL+STSGLFTLFF ALL QDS+NV+KVVAVF+SM GV MTT+GKTWA+DE
Sbjct:    1 MGWKYNAGLLLIGTTVIIWVTSAEVTQKIFTDYRQPFALTYLGASLMVVYLPIAAIKDITCKLMRKRSAKSKGSVETLDKSTGIGSPLKLIGADKVFEMEMQSTLTRKDSELDLSAQEEGRPLIAK-HKDNLDSLKQSKELTTMEIAKFSFYIAPIWFATEYLSNAALARTSVASTTVLSSTSGLFTLFFSALLGQDSLNVSKVVAVFVSMAGVVMTTLGKTWATDE 226

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
YMB8_YEAST	3.199e-20	39.42	Uncharacterized vacuolar membrane protein YML018C ...	[more]
THI74_YEAST	1.532e-19	39.10	Thiamine-repressible mitochondrial transport prote...	[more]
S35F5_BOVIN	3.647e-18	39.55	Solute carrier family 35 member F5 OS=Bos taurus G...	[more]
S35F5_MACFA	6.591e-18	38.81	Solute carrier family 35 member F5 OS=Macaca fasci...	[more]
S35F5_PONAB	1.062e-17	38.81	Solute carrier family 35 member F5 OS=Pongo abelii...	[more]
S35F5_HUMAN	1.091e-17	38.81	Solute carrier family 35 member F5 OS=Homo sapiens...	[more]
S35F5_MOUSE	1.556e-17	38.81	Solute carrier family 35 member F5 OS=Mus musculus...	[more]
YGF3_SCHPO	2.501e-16	37.31	Uncharacterized transporter C405.03c OS=Schizosacc...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0097168 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V4WAW2_9ROSI	3.238e-82	67.48	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
B9HB79_POPTR	1.209e-78	68.10	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
D7SV62_VITVI	8.332e-78	67.00	Putative uncharacterized protein OS=Vitis vinifera...	[more]
M5XDR2_PRUPE	1.533e-77	66.67	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A0B0PKS9_GOSAR	7.365e-74	98.39	Vacuolar membrane protein OS=Gossypium arboreum GN...	[more]
B9RNS9_RICCO	9.171e-74	67.11	Putative uncharacterized protein OS=Ricinus commun...	[more]
A0A022Q319_ERYGU	1.360e-72	61.27	Uncharacterized protein OS=Erythranthe guttata GN=...	[more]
A5BA13_VITVI	2.709e-72	66.81	Putative uncharacterized protein OS=Vitis vinifera...	[more]
W1PHI0_AMBTC	4.140e-70	63.08	Uncharacterized protein OS=Amborella trichopoda GN...	[more]
U5CW22_AMBTC	4.718e-69	62.89	Uncharacterized protein OS=Amborella trichopoda GN...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000620	EamA domain	PFAM	PF00892	EamA	coord: 159..217 e-value: 3.0E-6 score: 27.3
None	No IPR available	PANTHER	PTHR23051	SOLUTE CARRIER FAMILY 35, MEMBER F5	coord: 1..232
None	No IPR available	PANTHER	PTHR23051:SF2	SUBFAMILY NOT NAMED	coord: 1..232
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..63
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 200..219
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 33..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 220..251
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 194..199
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 64..171
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 172..193
None	No IPR available	SUPERFAMILY	103481	Multidrug resistance efflux transporter EmrE	coord: 155..220
None	No IPR available	TMHMM	TMhelix		coord: 44..63
None	No IPR available	TMHMM	TMhelix		coord: 171..193
None	No IPR available	TMHMM	TMhelix		coord: 15..32
None	No IPR available	TMHMM	TMhelix		coord: 200..219

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097168 ID=g.barbadense_cottongen_reftransV1_0097168; Name=g.barbadense_cottongen_reftransV1_0097168; organism=Gossypium barbadense; type=contig; length=2211bp
CGATATGATATGTTTTTTCTTTCAACAAATTCTTTTGTAAGTGGACAAAA
GCCCCAGATTCAACATCCCCGTTTCAAGCGACAAACCATTGTTCATGTAA
TATTTGATTTAACATATAGAAAGCAAAGCTAATATGAATTGACCCTTATT
GTTCATGTTTTGCTCTAATTGTCAAATAACCCCAGGCAACATTACTCGAG
TTAAGGCATCTAATCTCCCACACCCCTACAATTGTTTCATTGTTTTACAT
TTAAAAGATTAAAAACATTTTACGCTCCTCTGAAACTTGCAAAACGACTT
GCTACAACTGCGGTTTTCTCGAAAACTTGTCGGACACGTTAGCTATAACA
AAACCTGCAAACACCTGAATGCACCCAAAGATGTATACTGCGGAGAAGTG
TCGGCCATGTATAATCATGTCAGCTACCATTGCTAGGGGTATTGTCAATG
ACATTCCCAATGTTGCAACTAATGGAGTTGTCCAAACCACGGAAAGAGCC
CAGAAGTAGTCTGAGAGAACGCTTCCTACAAAGCCGTTTAAAAGCACTGC
CTCTCCAACAGATGCTGAATGGGGGAATGCAAATGGAGGTTCTATCCCAA
CAACATTAAGCGGCCACACAAGCCACCAAAGGCCAAGAAGAGTAAAGAGA
CCGACATATCCAAAGAACTTCTGCATATCGACTTTCTCTCCTTCTGATCC
AGCAGATTTCTTGAGCAGAACTGCATAAATTGACCAGTGACTCTGAATAA
AGCAGAAGAGCAGAGAAGCAGTCTCGCCAAATTAAATAGATTAAGTCAGT
ATTCAATTTAGATGCATAGAAAAAAGCCTACCTGTAAATAAACCATATGA
AATTGCAGACAGAAGACCAAATATATTCCCCATGATGGAGTGTCTTCTAG
CTCTAGACAACAAGAACAACACATGGTTCCATAAAAAAGAAAATCATGAA
ACAAAAATGCAAAAACCATTTCCATTGCAGGGATTATACGAAGAGCATCT
TATGCATATTACTACTCGAGCAGCCTAAACAGTCTACAACATGAATTTAT
AAACCTTCCACGGTAGATTCAACGTATTCTTTAGGAATAAGGAAATGTTA
ATAAATTATTGAAATAACTAGCAAAGAAAGACCCAACGCACTCAGAGACA
CTAAGCATTTCATCCGATGCCCATGTCTTTCCAATTGTGGTCATAGCAAC
ACCAGTCATGCTAATAAATACAGCAACCACTTTCGCAACATTTACACTGT
CCTGGCTGAGGAGAGCTCCGAAGAAAAGTGTAAAGAGCCCTGAAGTAGAT
GTTAGGACGGTAGTACTCGCAACACTGGTATTTGCCAGTGCAGAATTTGA
TAAATACTCAGTTGTAAACCAAATTGGAGTCAGGTATAAACTGCACTTGG
CAGTTTCCCATGAACTCGTTCCACCGCCATGGTCAGGCAAGTCAGGTCCA
TCTTTCTCAGTACTTGAGTTGAGAGGCTGCCCCTCTTCTCTTTCACTAAG
ATCCTTGTCAGTTATCAGGCATCTTTTAAGGTCAGCTTCAGCACTTTGGG
GCAACTCATTGAGTCCAATTGAGGTATCGATAACCGAGCTGCCATCGTAG
AGGTTTCTATATAAATTCGCATTAAATAAGTTGCAGATCCAATCCTTTAA
AAGCGCTATGGGTAAATAAACAACCATAAGGGACACTCCAAGATAAGTGA
GTGCAAATGGCTGTTTGTATTCTGAGAAAATCCTCTGTGTTACCTCTGCA
GATACGACCCATATAAACACAACAGTAGCAATCAACCCTAACCCAGCATT
ATACTTCAAACCCATCACCCCCAAAACACCAAACAGTATGGTAGACGCTG
AAACTTTGACTTTTTACAAAAAGAAAGAAGAAACAAGAATTGGCTTTGAA
ATTGCTATAAAACTTTGAGTTCCATGGTAAAAGCTGTGTGGGGATCTTCT
CTGATCTTATTTGTGTGCAATCACGCAACCATATTTAGCTGAAGCAGGGG
GGATGTTTTTAAACCGATTCACAAACAATCGGTGGAACCAATATGTGCGT
TAATGACGAAAGGTATTAAGTCTTTGATTTGAGAATTTTCTCTTTTTTAA
TATTGCCGTTAGTTTGAGGACAAGACTGCGAGAGTGACAAGTGGTTAAAT
GTCAAGGAAAGATGGTTAATATCTGCGACGAACCCCGCTGAAGTGGCGTT
TTAAACTTCGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000620	EamA_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral to membrane

Search form

g.barbadense_cottongen_reftransV1_0097168, g.barbadense_cottongen_reftransV1_0097168 (contig) Gossypium barbadense

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