g.barbadense_cottongen_reftransV1_0097146, g.barbadense_cottongen_reftransV1_0097146 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH_HAEIN (Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=thrA PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.681e-22 Identity = 77/253 (30.43%), Postives = 130/253 (51.38%), Query Frame = -3 Query: 1337 YQQQSKTMKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRH----ESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2083 +Q K++ + L+G GGVG +L++ + + AK+ V +RV +++S ++ LD+N L ++ + L T + V S K+ + + + VDC+++ G+ + G VV NKK T Y++ + +H E+ VGAGLPVI ++ ++++GD + G LSG+L ++ ++E+G LS+V A+ G+TEPDPRDDLSG DVARK+ I Sbjct: 456 HQALFNNKKVVDMFLVGVGGVGGELIEQVKRQKEYLAKKNVEIRVCAIANSNRML---------LDENGL----NLEDWKNDLENATQPSDFDVLL---SFIKLHHVVNPV-------FVDCTSAESVAGLYARALKEGFHVVTPNKKANTRELVYYNELRQNAQASQHKFLYETNVGAGLPVIENLQNLLAAGDELEYFEGILSGSLSFIFGKLEEGLSLSEVTALAREKGFTEPDPRDDLSGQDVARKLLI 685 HSP 2 Score: 65.855 bits (159), Expect = 9.615e-10 Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = -2 Query: 483 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADIL 878 ++ LILAR G ++L +++E + P+ K S +EF+ + +LD + RV A G VLRYV I +C V I + N+ L +++ +N L Y+R Y PL+++G GAGN TAAG+ ADIL Sbjct: 681 RKLLILAREAGIELELSDVEVEGVLPKGFSDGK-SADEFM-AMLPQLDEEFKTRVATAKAEGKVLRYVGKISEGKCKVSIVAVDLNNPLYKVKDGENALAFYTRYYQPIPLLLRGYGAGNAVTAAGIFADIL 810
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: DHOM_SCHPO (Probable homoserine dehydrogenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.03 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.395e-21 Identity = 78/246 (31.71%), Postives = 119/246 (48.37%), Query Frame = -3 Query: 1337 LMGCGGVGRQLLQHIVSCRSLHAKQGV-HLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLA-LVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRR----IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMS-EVEDGKP----LSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2041 ++G G +G +LL I + G VV +S + ++ D + L S +TS + + S ++D L KS A LVD +AS + ++ + NKK +++ + Y + + + HE++VGAGLP+IS++ +I++GD I +I G SGTL Y+ + +GK S +VK AK GYTEPDPRDDL+GMDVARKV I Sbjct: 12 IVGTGNIGGELLNQIKGFNENASTNGTTSFNVVAISSMEGHYVSKDYQPINL---------------SEWKNLTSQNQG-----AYSLDALVDF---LAKSPLPAILVDNTASEAIAQSYPKFLSKKINIATPNKKAFSASNDVYQNIIKASKESGALLMHEASVGAGLPIISTLKELIATGDEIIKIEGIFSGTLSYIFNVWSPNGKKGTASFSDIVKIAKQNGYTEPDPRDDLNGMDVARKVTI 234
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: DHOM_EMENI (Homoserine dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN2882 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 3.138e-21 Identity = 61/154 (39.61%), Postives = 86/154 (55.84%), Query Frame = -3 Query: 1337 DIASILGKSTGLA-LVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRR----IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDG-----KPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 1768 +IA+ L + G + LVD ++ + G VV NKK +S + + + + HESTVGAGLPVIS++ ++++GD + RI G SGTL ++ + S+VV AK LGYTEPDPRDDL+GMDVARK+ I Sbjct: 77 EIATYLASAPGRSILVDNTSDPALASNYPVFLRKGISVVTPNKKGFSSDLSLWKEIFAAAAEGKALVYHESTVGAGLPVISTLKDLVNTGDEVTRIEGVFSGTLSFLFNTFAPASGSSSAKWSEVVSQAKELGYTEPDPRDDLNGMDVARKLTI 230 HSP 2 Score: 63.5438 bits (153), Expect = 2.677e-9 Identity = 52/136 (38.24%), Postives = 79/136 (58.09%), Query Frame = -2 Query: 477 ILARLLGKRI-DLGSIKIESLYPEEMG--PNKMS-VEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGAR--CNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDI 866 ILAR+ G + S IESL P E+ P+ + +F+ + D+ + + A G V+RYV ++ A+ VG+Q+ K+SA+ L+GSDN++ Y+R Y PL++QGAGAG D TA GV AD+L + Sbjct: 230 ILARIAGLDVQSPDSFPIESLIPAELTSLPSSADGIAQFM-ARLPEFDSQMAAIKEGAEKAGKVVRYVGSVDVAKKEVRVGLQQFDKDSAIAGLKGSDNIISFYTRRYGSNPLIVQGAGAGGDVTAMGVTADLLKV 364
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AK1H_SERMA (Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 5.158e-21 Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = -3 Query: 1301 LVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYP----RRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI*I--CSHVLDYSDI 1729 +VDC++S + + G VV NKK TS+ Y + + R+ +++ VGAGLPVI ++ ++++GD + R G LSG+L ++ ++++G LS A++ GYTEPDPRDDLSGMDVARK+ I + L+ SDI Sbjct: 551 IVDCTSSQAVADQYVDFLADGFHVVTPNKKANTSSMNYYQQLRAAAAGSHRKFLYDTNVGAGLPVIENLQNLLNAGDELVRFSGILSGSLSFIFGKLDEGLSLSAATLQARANGYTEPDPRDDLSGMDVARKLLILAREAGYKLELSDI 699 HSP 2 Score: 67.0106 bits (162), Expect = 4.573e-10 Identity = 53/132 (40.15%), Postives = 76/132 (57.58%), Query Frame = -2 Query: 483 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADIL 878 ++ LILAR G +++L I++E + P + V+ FL + LD V A+ G VLRYV +I+ RC V I+ + N L +++ +N L YSR Y PLV++G GAGND TAAGV AD+L Sbjct: 681 RKLLILAREAGYKLELSDIEVEPVLPPSFDASG-DVDTFL-ARLPELDKEFARNVANAAEQGKVLRYVGLIDEGRCKVRIEAVDGNDPLYKVKNGENALAFYSRYYQPLPLVLRGYGAGNDVTAAGVFADLL 810
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AK2H_ECOLI (Bifunctional aspartokinase/homoserine dehydrogenase 2 OS=Escherichia coli (strain K12) GN=metL PE=1 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 3.220e-19 Identity = 74/254 (29.13%), Postives = 112/254 (44.09%), Query Frame = -3 Query: 1337 YQQQSKTMKIIPLILMGCGGVGRQLLQHIVSCRS-LHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDY----DKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2083 +Q + K I L+L G G +G + L+ +S L A+ G + GV DS+ +++ D G S+ + + E + A L ++D +AS + + + G V+ ANK S Y D F R + +TVGAGLP+ ++ +I SGD I I G SGTL ++ + + P +++V A G TEPDPRDDLSG DV RK+ I Sbjct: 449 HQSVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYD--------------------GLDASRALAFFNDEAVEQDEESLFLWMRAH---PYDDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVI 679
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: DHOM_METJA (Homoserine dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=hom PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 5.828e-10 Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = -3 Query: 1337 VVLANKKPLTSTPEDYDKFVSYPRR----IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVE-DGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 1660 VV ANK PL Y + + ++ RHE++VG +P+I+ ++ G+ I I G L+GT Y+++++E +G +K AK LG E DP D+ G+D A K+ I Sbjct: 118 VVTANKGPLALC---YKELIEEAKKHGVIFRHEASVGGAMPIINLAKETLA-GNEILSIRGILNGTTNYILTKMEKEGLDFETALKEAKELGIAETDPTQDIEGLDTAAKIVI 226
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: DHOM_SYNY3 (Homoserine dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hom PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 6.362e-10 Identity = 38/110 (34.55%), Postives = 62/110 (56.36%), Query Frame = -3 Query: 1337 VVLANKKPLTST-PEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEV-EDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 1660 +V ANK + PE Y+ + + E+ VG G+P+I + + + G+ I IVG L+GT Y++S + +G +V+ +A+ LGY E DP D+ G+D A K+ I Sbjct: 97 IVTANKAVIARYGPEIYEAANQHGVYVLLEAAVGGGIPIIKPLKQSLG-GNRIQSIVGILNGTTNYILSRMTSEGADFDEVLTAAQQLGYAEADPSADVDGLDAADKIAI 205
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: DHOM_BACSU (Homoserine dehydrogenase OS=Bacillus subtilis (strain 168) GN=hom PE=1 SV=2) HSP 1 Score: 62.003 bits (149), Expect = 1.043e-8 Identity = 28/84 (33.33%), Postives = 56/84 (66.67%), Query Frame = -3 Query: 1337 IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSE-VEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 1585 I E++V G+P++ ++ +SS D I +++G ++GT +++++ +++ P +V+K A+ LG+ E DP D+ G+D ARK+ I Sbjct: 126 IYFEASVAGGIPILRTLEEGLSS-DRITKMMGIVNGTTNFILTKMIKEKSPYEEVLKEAQDLGFAEADPTSDVEGLDAARKMAI 208
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: DHOM_PSEAE (Homoserine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=hom PE=3 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 1.497e-7 Identity = 30/84 (35.71%), Postives = 52/84 (61.90%), Query Frame = -3 Query: 1337 IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEV-EDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 1585 + E+ V G+PVI +I +S+ + I+ + G ++GT +++SE+ E G+ V+ A++LGY E DP D+ G+D A K+ I Sbjct: 124 VAFEAAVAGGIPVIKAIREGLSA-NRINWLAGIINGTGNFILSEMREKGRTFPDVLAEAQALGYAEADPTFDVEGIDAAHKLTI 206
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: DHOM_LACLC (Homoserine dehydrogenase OS=Lactococcus lactis subsp. cremoris GN=hom PE=3 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 5.408e-7 Identity = 27/84 (32.14%), Postives = 52/84 (61.90%), Query Frame = -3 Query: 1337 IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEV-EDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 1585 + +E+ V G+P++ ++ SS D I ++G L+GT ++M+++ E+G + + A+ LGY E DP +D+ G+D + K+ I Sbjct: 127 LYYEAAVAGGIPILRTLANSFSS-DKITHLLGILNGTSNFMMTKMSEEGWTYDESLAKAQELGYAESDPTNDVDGIDASYKLAI 209
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: A0A078FUD3_BRANA (Homoserine dehydrogenase OS=Brassica napus GN=BnaC09g36820D PE=3 SV=1) HSP 1 Score: 355.14 bits (910), Expect = 1.924e-111 Identity = 180/244 (73.77%), Postives = 210/244 (86.07%), Query Frame = -3 Query: 1337 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLG--ESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2062 MK I +ILMGCGGVGRQLLQHIVS RSLHAK GVHLRVVGVSDSKSL + DV ++ LDD++L+EVC +KS GS+L+ + +LG E +VF+ SES + +IA +LGKSTGL +VDCSASSET+ +L + V+LGCCVVLANKKPLTST E YDK V PRRIRHESTVGAGLPVI+S+NRIISSGDP+H IVGSLSGTLGYVMSE+EDG+PLSQVV++AK+LGYTEPDPRDDLSGMDVARK I Sbjct: 1 MKKISVILMGCGGVGRQLLQHIVSFRSLHAKMGVHLRVVGVSDSKSLAVPVDVLKEGLDDDLLSEVCSIKSAGSALTTLGALGKGEYRVFNGSESIRETEEIAQLLGKSTGLVVVDCSASSETVEILMKAVDLGCCVVLANKKPLTSTLEHYDKLVLDPRRIRHESTVGAGLPVIASMNRIISSGDPVHSIVGSLSGTLGYVMSELEDGRPLSQVVRAAKTLGYTEPDPRDDLSGMDVARKALI 244 HSP 2 Score: 187.193 bits (474), Expect = 5.486e-49 Identity = 103/139 (74.10%), Postives = 122/139 (87.77%), Query Frame = -2 Query: 462 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLFP 878 ++ALILARLLGKRI + SIKIESLYPEEM P M+V++FL G+ +LD NIEERVK+AS NG VLRYVC+IEG+ VGI+E+PK+S LGRLRGSDN++EI SRCY +QPLVIQGAGAGNDTTAAGVLADI+D+QDLFP Sbjct: 240 RKALILARLLGKRIVMDSIKIESLYPEEMRPGVMTVDDFLQNGIAKLDQNIEERVKRASSNGCVLRYVCMIEGSSVQVGIREVPKDSPLGRLRGSDNIVEIRSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDMQDLFP 378
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: A0A087G8W6_ARAAL (Homoserine dehydrogenase OS=Arabis alpina GN=AALP_AA8G232000 PE=3 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 4.654e-111 Identity = 177/244 (72.54%), Postives = 210/244 (86.07%), Query Frame = -3 Query: 1337 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSL--GESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2062 MK IP+ LMGCGGVGR LLQHIVSCRS+H+K GV+LRV+GV DSKSL++ DV ++EL+D +L+E+C VKS GSSLSK+ +L G QVF++SESR +IA LGKSTGLA+VDCSA+ +TI VL + V+ GCCVVLANKKPLTST E YDK V +PR +RHESTVGAGLPVI+S+NRIISSGDP+H+IVGSLSGTLGYVMSE+EDGKPLSQVV++AK+LGYTEPDPRDDLSGMDVARK I Sbjct: 1 MKKIPVFLMGCGGVGRYLLQHIVSCRSIHSKLGVYLRVIGVCDSKSLLVPMDVLKEELNDEVLSEICIVKSTGSSLSKLGALEKGGYQVFNDSESRKVTEEIAERLGKSTGLAVVDCSATMDTIEVLMKAVDEGCCVVLANKKPLTSTMEHYDKLVLHPRHVRHESTVGAGLPVIASMNRIISSGDPVHKIVGSLSGTLGYVMSELEDGKPLSQVVRAAKTLGYTEPDPRDDLSGMDVARKALI 244 HSP 2 Score: 189.889 bits (481), Expect = 6.727e-50 Identity = 106/139 (76.26%), Postives = 123/139 (88.49%), Query Frame = -2 Query: 462 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLFP 878 ++ALILARLLGKR+ + SIKIESLYPEEMGP MSV++FLN +V LD NIE+RVK+AS NG VLRYVCVIEG+ VGI+E+ K+S LGRLRGSDN++EIYSRCY +QPLVIQGAGAGNDTTAAGVLADILD+QDLFP Sbjct: 240 RKALILARLLGKRVVMDSIKIESLYPEEMGPGLMSVDDFLNNEIVNLDQNIEDRVKRASSNGCVLRYVCVIEGSSVQVGIREVSKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADILDLQDLFP 378
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: D7M071_ARALL (Homoserine dehydrogenase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_910146 PE=3 SV=1) HSP 1 Score: 353.984 bits (907), Expect = 6.198e-111 Identity = 175/239 (73.22%), Postives = 204/239 (85.36%), Query Frame = -3 Query: 1346 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARK 2062 MK I ++LMGCGGVGR LLQHI SCRSLHAK GV LRVVGV DSKSL+ DV ++EL+D +L+EVCR+KS G +LSK+ +LG +VF+ SE + +IA +LGKS GLA+VDCSAS ETI +L + V+LGCCVVLANKKPLTST E YDK +PR IRHESTVGAGLPVI+S+NRIISSGDP+HRIVGSLSGTLGYVMSE+EDGKPLSQVV++AK+LGYTEPDPRDDLSGMDVARK Sbjct: 1 MKKIAVLLMGCGGVGRHLLQHIASCRSLHAKMGVQLRVVGVCDSKSLVAPMDVLKEELNDELLSEVCRIKSSGLALSKLGALGGYRVFNASELSRETEEIAKLLGKSAGLAVVDCSASMETIEILMKAVDLGCCVVLANKKPLTSTLEHYDKLALHPRFIRHESTVGAGLPVIASLNRIISSGDPVHRIVGSLSGTLGYVMSELEDGKPLSQVVQAAKTLGYTEPDPRDDLSGMDVARK 239 HSP 2 Score: 192.2 bits (487), Expect = 8.548e-51 Identity = 105/138 (76.09%), Postives = 124/138 (89.86%), Query Frame = -2 Query: 465 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLF 878 ++ LILARLLGKRI + SIKIES+YPEEMGP MSV++FL+ G+V+LD NIEERVK+AS NG VLRYVCVIEG+ VGI+E+PK+S LGRLRGSDN++EIYSRCY +QPLVIQGAGAGNDTTAAGVLADI+D+QDLF Sbjct: 238 RKGLILARLLGKRIIMDSIKIESMYPEEMGPGLMSVDDFLHNGIVKLDQNIEERVKRASSNGCVLRYVCVIEGSSVQVGIREVPKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDLQDLF 375
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: A0A059ABI7_EUCGR (Homoserine dehydrogenase OS=Eucalyptus grandis GN=EUGRSUZ_J00623 PE=3 SV=1) HSP 1 Score: 352.829 bits (904), Expect = 1.497e-110 Identity = 177/243 (72.84%), Postives = 202/243 (83.13%), Query Frame = -3 Query: 1337 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLII-ASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2062 MK + L+LMGCGGVGRQLL+HIVSCRSLHA QGVHLRVVGV DSKSL++ A D ELDD L EVCRVK DGSSLSK++ G +VF++SE KV ++ S LG LA+VDCSASSET +L ++LGCC+VLANKKPLT+T E YDK VS PRRIRHESTV AGLP+I+S+NRI+SSGDP+HR+VGSLSGTLGYVMSEVEDGKPLSQVVK+AKSLGYTEPDPRDDL GMDVARK I Sbjct: 1 MKKMTLLLMGCGGVGRQLLRHIVSCRSLHATQGVHLRVVGVCDSKSLVVVAPDAHMLELDDKFLLEVCRVKEDGSSLSKLSGFGACRVFAHSELTAKVFNMVSHLG----LAVVDCSASSETTEILSRAIDLGCCIVLANKKPLTATMEYYDKLVSQPRRIRHESTVRAGLPIIASLNRILSSGDPVHRLVGSLSGTLGYVMSEVEDGKPLSQVVKTAKSLGYTEPDPRDDLGGMDVARKALI 239 HSP 2 Score: 193.741 bits (491), Expect = 2.243e-51 Identity = 105/139 (75.54%), Postives = 125/139 (89.93%), Query Frame = -2 Query: 462 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLFP 878 ++ALILARLLG+RI + SIK+ESLYP+EMGP MSV++FL+ G+ LD +I +RV KAS++G VLRYVCVIEG RC VGIQELP++S LGRLRGSDNVLE+Y+RCY++QPLVIQGAGAGNDTTAAGVLADILDIQDLFP Sbjct: 235 RKALILARLLGRRITMDSIKVESLYPDEMGPTVMSVDDFLSKGLPLLDTSICKRVAKASVSGKVLRYVCVIEGTRCEVGIQELPRDSPLGRLRGSDNVLEVYTRCYNKQPLVIQGAGAGNDTTAAGVLADILDIQDLFP 373
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: Q8LF92_ARATH (Homoserine dehydrogenase OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 352.443 bits (903), Expect = 2.041e-110 Identity = 173/239 (72.38%), Postives = 205/239 (85.77%), Query Frame = -3 Query: 1346 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARK 2062 MK IP++LMGCGGVGR LLQHIVSCRSLHAK GVH+RV+GV DSKSL+ DV ++EL+D +L+EVC +KS GS+LSK+ +LG +V +SE T+ +IA +LGKSTGLA+VDCSAS ETI +L + V+LGCC+VLANKKP+TST E YDK +PR IRHESTVGAGLPVI+S+NRIISSGDP+HRIVGSLS TLGYVMSE+EDGKPLSQVV++AK LGYTEPDPRDDL GMDVARK Sbjct: 1 MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELNDELLSEVCLIKSTGSALSKLGALGGYRVVHDSELSTETEEIAKLLGKSTGLAVVDCSASMETIEILMKAVDLGCCIVLANKKPVTSTLEHYDKLALHPRFIRHESTVGAGLPVIASLNRIISSGDPVHRIVGSLSVTLGYVMSELEDGKPLSQVVQAAKKLGYTEPDPRDDLGGMDVARK 239 HSP 2 Score: 188.734 bits (478), Expect = 1.558e-49 Identity = 105/138 (76.09%), Postives = 122/138 (88.41%), Query Frame = -2 Query: 465 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLF 878 ++ LILARLLGKRI + SIKIESLYPEEMGP MSV++FL+ G+V+LD NIEERVKKAS G VLRYVCVIEG+ VGI+E+ K+S LGRLRGSDN++EIYSRCY +QPLVIQGAGAGNDTTAAGVLADI+D+QDLF Sbjct: 238 RKGLILARLLGKRIIMDSIKIESLYPEEMGPGLMSVDDFLHNGIVKLDQNIEERVKKASSKGCVLRYVCVIEGSSVQVGIREVSKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDLQDLF 375 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 20
Pagesback to top
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097146 ID=g.barbadense_cottongen_reftransV1_0097146; Name=g.barbadense_cottongen_reftransV1_0097146; organism=Gossypium barbadense; type=contig; length=2253bpback to top |