g.barbadense_cottongen_reftransV1_0097146, g.barbadense_cottongen_reftransV1_0097146 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097146
Unique Name	g.barbadense_cottongen_reftransV1_0097146
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2253

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH1_MAIZE (Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.285e-27
Identity = 82/241 (34.02%), Postives = 125/241 (51.87%), Query Frame = -3

Query: 1337 LMGCGGVGRQLLQHIVSCRS-LHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSK-ITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPR----RIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2041
            ++G G +GR LL  +    + L     + LRV+G++ S+++++ SD+    +D     E  + +++ ++L K +  L E+  F N                     LVDC+A +       + +  G  V+  NKK  +   + Y K  +  R       +E+TVGAGLP+IS++  ++ +GD I RI G  SGTL Y+ +  E  +  S VV  AK  GYTEPDPRDDLSG DVARKV I
Sbjct:  566 IIGPGLIGRTLLNQLKDQAAVLKENMNIDLRVMGIAGSRTMLL-SDIG---VDLTQWKEKLQTEAEPANLDKFVHHLSENHFFPNR-------------------VLVDCTADTSVASHYYDWLKKGIHVITPNKKANSGPLDRYLKLRTLQRASYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFEGARTFSDVVAEAKKAGYTEPDPRDDLSGTDVARKVII 783

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: DHOM_YEAST (Homoserine dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOM6 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.091e-26
Identity = 81/252 (32.14%), Postives = 126/252 (50.00%), Query Frame = -3

Query: 1337 TMKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLD--IASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDK-FVSYPRR--IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKP----LSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2065
            + K++ + ++G G VG   L  +++ +S      +   +V +++++  +I+ D                V SD  +             + S ++T  LD  IA +      + LVD ++S+   G   + V  G  +   NKK  +S    +   F + P    + HE+TVGAGLP+IS +  II +GD + +I G  SGTL Y+ +E    +      S VVK AK LGYTEPDPRDDL+G+DVARKV I
Sbjct:    2 STKVVNVAVIGAGVVGSAFLDQLLAMKS-----TITYNLVLLAEAERSLISKDFSP-----------LNVGSDWKA-----------ALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTI 226

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH_BUCAI (Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=thrA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.757e-26
Identity = 74/245 (30.20%), Postives = 123/245 (50.20%), Query Frame = -3

Query: 1337 KIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKF----VSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2059
            K I + L+G GG+G  LL  I+  +    K+ + +++  +++SK +++  +      D +      +  +   +L  + +L ++  FSNS                    +VDC++S          ++    VV +NKK  TS    Y K         ++  +E+ VGAGLPVI ++  +  SGD +    G LSG+L ++   +E+G  LSQ  + AK LG+TEP+P DDLSG+DVARK+ I
Sbjct:  465 KTIHMFLIGIGGIGSTLLNQILKQKQFLDKKNIEIKICAIANSKKILLLDNTN----DLSNWKNDFKKSTQKFNLELLNNLIKNNHFSNS-------------------VIVDCTSSQLLSEQYVNFIDNNFHVVTSNKKANTSEWNYYKKIRKSVAQTGKKFLYETNVGAGLPVIETLQNLFKSGDNLICFKGILSGSLSFIFGRLEEGILLSQATREAKELGFTEPNPCDDLSGIDVARKLLI 686

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH_BUCAP (Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=thrA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.774e-25
Identity = 72/246 (29.27%), Postives = 132/246 (53.66%), Query Frame = -3

Query: 1343 IIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSA----SSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKF----VSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKV 2056
            II + L+G GGVG+ LL+ I+       ++ + ++   +++SK L+   +     ++ N   E  +   +  +L+ +  L ++   SNS                    ++DC++    S + I  +K+G +    ++ +NKK  T + + Y +     +   ++  +E+ VGAGLPVI+++  + S+GD +    G LSG+L ++  ++E+G  LS+  K AK LG+TEP+P DDLSG+DVARK+
Sbjct:  464 IINVFLIGIGGVGKALLKQILKQEKFLDQKNIKIQFRMIANSKKLLFLKN----SINLNNWEENFKKSKEKFNLTILNELLKNTCDSNS-------------------VIIDCTSDYILSKQYISFIKKGFH----IITSNKKANTDSLKYYSEIRTTALKENKKFLYETNVGAGLPVINTLQSLFSTGDCLISFKGILSGSLSFIFGKLEEGVLLSEATKEAKKLGFTEPNPFDDLSGIDVARKL 682

HSP 2 Score: 69.707 bits (169), Expect = 6.974e-11
Identity = 57/135 (42.22%), Postives = 83/135 (61.48%), Query Frame = -2

Query:  477 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIE-GARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDI 878
            ++ L+LAR +G  I+L  I IE + PE     + S EEFL   +  LD+   ERV KA   GNVLR++  IE   +C+V I+E+  N+ L +++  +N L  Y+  Y   PLV++G GAGND TA+GV +D+L I
Sbjct:  680 RKLLVLAREIGYSIELKDISIEPILPERFKKYQNS-EEFL-FKLKELDSFFSERVNKARDIGNVLRFIGSIEKNGKCSVKIEEINSNNPLYKVKNGENALTFYTNYYQPIPLVLRGYGAGNDVTASGVFSDLLRI 812

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH_DAUCA (Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.080e-25
Identity = 78/240 (32.50%), Postives = 121/240 (50.42%), Query Frame = -3

Query: 1337 LMGCGGVGRQLLQHIVSCRS-LHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRR----IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2041
            ++G G +G  LL  +    + L     + LRV+G++ S++++++    +  +D +   EV + K   + L K         F  S                    +VDC+A SE      + +  G  V+  NKK  +   + Y K  +  RR      +E+TV AGLP+I+++  ++ +GD I RI G  SGTL Y+ +  +   P S+VV  AK+ GYTEPDPRDDL+G DVARKV I
Sbjct:  567 IVGPGLIGATLLDQLRDQAAILKENSKIDLRVMGITGSRTMLLS----ETGIDLSRWREVQKEKGQTAGLEKFVQHVRGNHFIPST------------------VIVDCTADSEVASHYHDWLCRGIHVITPNKKANSGPLDQYLKLRALQRRSYTHYFYEATVVAGLPIITTLQGLLETGDKILRIEGIFSGTLSYIFNNFKSTTPFSEVVSEAKAAGYTEPDPRDDLAGTDVARKVII 784

HSP 2 Score: 56.9954 bits (136), Expect = 6.054e-7
Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = -2

Query:  483 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGA--RCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADIL 878
            ++ +ILAR  G +++L  I ++SL PE +     S EEFL   + + D+++  + + A   G VLRYV V++    +  V ++   K     +L GSDN+    +  Y++QP +I+G GAG + TA GV +DIL
Sbjct:  780 RKVIILARGSGLKLELSDIPVQSLVPEPLR-GIASAEEFLLQ-LPQFDSDMTRKREDAENAGEVLRYVGVVDAVNQKGVVELKRYKKEHPFAQLSGSDNINAFTTERYNKQPPIIRGPGAGAEVTAGGVFSDIL 911

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH_BUCBP (Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=thrA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.481e-25
Identity = 70/242 (28.93%), Postives = 126/242 (52.07%), Query Frame = -3

Query: 1337 LILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASD-VKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKF----VSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2047
            + L+G G VG+  L+ I+  ++    + + L++ G+++SK+ I+  D +  K    ++            +LSK  S     + ++ ++   +  I           +VDC++           +N G  +V  NKK  T+  + Y+          ++  +E+ VGAGLPVI ++  ++ +GD +    G LSG+L ++  ++ED   LS+  K A+SLG+TEP+P+DDLSG+DVARK+ I
Sbjct:  469 IFLIGIGRVGQTFLKQIIEQKNWLKSKNIDLKICGIANSKNFILNLDGINPKNWKRDL------------NLSK-KSFNFKHLLNSIQNYYLINPI-----------IVDCTSDKNIANQYISFINCGFHIVTPNKKANTTNWKYYEDIRLAAQKEKKKFFYETNVGAGLPVIENLKNLLRTGDTLIHFKGILSGSLSFIFGKLEDNISLSEATKQAQSLGFTEPNPKDDLSGIDVARKLLI 686

HSP 2 Score: 63.929 bits (154), Expect = 3.954e-9
Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = -2

Query:  477 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVI-EGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDI 878
            ++ LILAR +G +++L  IKIE L P+E   N  +  +F+   +  LD     RVKKA   G  LR+V +I +   C V I E+  N  L  ++  +N L  YS+ Y   PLV++G GAGN+ TA+G+ +D+L I
Sbjct:  682 RKLLILAREVGYKLELKDIKIEPLLPKEFN-NISNTTDFITK-LKELDQIFCNRVKKARKLGKRLRFVGIINQKGNCQVKIDEVDHNDPLYNIKNGENALAFYSKYYQPIPLVLRGYGAGNNVTASGIFSDVLRI 814

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH2_MAIZE (Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.549e-24
Identity = 72/218 (33.03%), Postives = 112/218 (51.38%), Query Frame = -3

Query: 1343 LHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSL-SKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPR----RIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKV 1981
            L     + LRV+G++ S ++++ SD     +D     ++ + +++ + + S +  L ++ VF N                     LVDC+A +       + +  G  V+  NKK  +   + Y K  +  R       +E+TVGAGLP+IS++  ++ +GD I RI G  SGTL Y+ +  E  +  S VV  A+  GYTEPDPRDDLSG DVARKV
Sbjct:  584 LKENMNIDLRVIGITGSSTMLL-SDTG---IDLTQWKQLLQKEAEPADIGSFVHHLSDNHVFPNK-------------------VLVDCTADTSVASHYYDWLKKGIHVITPNKKANSGPLDQYLKLRTMQRASYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFEGTRAFSDVVAEAREAGYTEPDPRDDLSGTDVARKV 778

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AK1H_ECOLI (Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.173e-23
Identity = 74/230 (32.17%), Postives = 122/230 (53.04%), Query Frame = -3

Query: 1337 LLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYP-----RRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2011
            LL+ +   +S    + + LRV GV++SK+L+  ++V    L+ N   E+ + K +  +L ++  L +     N                     +VDC++S        + +  G  VV  NKK  TS+  DY   + Y      R+  +++ VGAGLPVI ++  ++++GD + +  G LSG+L Y+  ++++G   S+    A+ +GYTEPDPRDDLSGMDVARK+ I
Sbjct:  480 LLEQLKRQQSWLKNKHIDLRVCGVANSKALL--TNVHGLNLE-NWQEELAQAK-EPFNLGRLIRLVKEYHLLNP-------------------VIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSS-MDYYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLI 685

HSP 2 Score: 64.6994 bits (156), Expect = 2.271e-9
Identity = 56/133 (42.11%), Postives = 75/133 (56.39%), Query Frame = -2

Query:  483 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVI-EGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADIL 878
            ++ LILAR  G+ ++L  I+IE + P E       V  F+   + +LD+    RV KA   G VLRYV  I E   C V I E+  N  L +++  +N L  YS  Y   PLV++G GAGND TAAGV AD+L
Sbjct:  681 RKLLILARETGRELELADIEIEPVLPAEFNAEG-DVAAFM-ANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLL 811

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH2_ARATH (Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.131e-23
Identity = 82/240 (34.17%), Postives = 122/240 (50.83%), Query Frame = -3

Query: 1337 LMGCGGVGRQLLQHIVSCRS-LHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRR----IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2041
            ++G G +G  LL  +    + L  +  + LRV+G++ SK +++ SD+    +D +   E+   K   + L K T     QV  N      V+              VDC+A S       + +  G  V+  NKK  +   + Y K     R+      +E+TVGAGLP+IS++  ++ +GD I RI G  SGTL Y+ +     +  S+VV  AK+ G+TEPDPRDDLSG DVARKV I
Sbjct:  562 IVGPGLIGATLLDQLRDQAAVLKQEFNIDLRVLGITGSKKMLL-SDIG---IDLSRWRELLNEKGTEADLDKFTQ----QVHGNHFIPNSVV--------------VDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFNNFVGDRSFSEVVTEAKNAGFTEPDPRDDLSGTDVARKVII 779

HSP 2 Score: 60.4622 bits (145), Expect = 5.298e-8
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = -2

Query:  483 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGA--RCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADIL 878
            ++ +ILAR  G ++DL  + I SL PE +     SVEEF+   + + D ++ +    A  +G VLRYV V++    +  V ++   K     +L GSDN++   +  Y   PL+++G GAG   TA G+ +DIL
Sbjct:  775 RKVIILARESGLKLDLADLPIRSLVPEPLK-GCTSVEEFMEK-LPQYDGDLAKERLDAENSGEVLRYVGVVDAVNQKGTVELRRYKKEHPFAQLAGSDNIIAFTTTRYKDHPLIVRGPGAGAQVTAGGIFSDIL 906

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Match: AKH1_ARATH (Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.363e-22
Identity = 70/214 (32.71%), Postives = 110/214 (51.40%), Query Frame = -3

Query: 1337 VHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVF-SNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRR----IRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 1963
            + LRV+G++ S  ++++    +  +D +   E+ + + + + + K T   +   F  NS                    +VDC+A ++      + +  G  VV  NKK  +   + Y K     R+      +E+TVGAGLP+IS++  ++ +GD I RI G  SGTL Y+ +     +  S+VV  AK  G+TEPDPRDDLSG DVARKV I
Sbjct:  584 IDLRVIGITGSSKMLMS----ESGIDLSRWRELMKEEGEKADMEKFTQYVKGNHFIPNS-------------------VMVDCTADADIASCYYDWLLRGIHVVTPNKKANSGPLDQYLKIRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYLFNNFVGTRSFSEVVAEAKQAGFTEPDPRDDLSGTDVARKVTI 774

HSP 2 Score: 59.6918 bits (143), Expect = 8.680e-8
Identity = 42/134 (31.34%), Postives = 78/134 (58.21%), Query Frame = -2

Query:  483 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGA--RCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADIL 878
            ++  ILAR  G ++DL  + +++L P+ +     S EEF+   + + D  + ++ ++A   G VLRYV V++    +  V ++   K+    +L G+DN++   ++ Y +QPL+++G GAG   TA G+ +DIL
Sbjct:  770 RKVTILARESGLKLDLEGLPVQNLVPKPLQACA-SAEEFMEK-LPQFDEELSKQREEAEAAGEVLRYVGVVDAVEKKGTVELKRYKKDHPFAQLSGADNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDIL 901

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: A0A078FUD3_BRANA (Homoserine dehydrogenase OS=Brassica napus GN=BnaC09g36820D PE=3 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 1.924e-111
Identity = 180/244 (73.77%), Postives = 210/244 (86.07%), Query Frame = -3

Query: 1337 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLG--ESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2062
            MK I +ILMGCGGVGRQLLQHIVS RSLHAK GVHLRVVGVSDSKSL +  DV ++ LDD++L+EVC +KS GS+L+ + +LG  E +VF+ SES  +  +IA +LGKSTGL +VDCSASSET+ +L + V+LGCCVVLANKKPLTST E YDK V  PRRIRHESTVGAGLPVI+S+NRIISSGDP+H IVGSLSGTLGYVMSE+EDG+PLSQVV++AK+LGYTEPDPRDDLSGMDVARK  I
Sbjct:    1 MKKISVILMGCGGVGRQLLQHIVSFRSLHAKMGVHLRVVGVSDSKSLAVPVDVLKEGLDDDLLSEVCSIKSAGSALTTLGALGKGEYRVFNGSESIRETEEIAQLLGKSTGLVVVDCSASSETVEILMKAVDLGCCVVLANKKPLTSTLEHYDKLVLDPRRIRHESTVGAGLPVIASMNRIISSGDPVHSIVGSLSGTLGYVMSELEDGRPLSQVVRAAKTLGYTEPDPRDDLSGMDVARKALI 244

HSP 2 Score: 187.193 bits (474), Expect = 5.486e-49
Identity = 103/139 (74.10%), Postives = 122/139 (87.77%), Query Frame = -2

Query:  462 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLFP 878
            ++ALILARLLGKRI + SIKIESLYPEEM P  M+V++FL  G+ +LD NIEERVK+AS NG VLRYVC+IEG+   VGI+E+PK+S LGRLRGSDN++EI SRCY +QPLVIQGAGAGNDTTAAGVLADI+D+QDLFP
Sbjct:  240 RKALILARLLGKRIVMDSIKIESLYPEEMRPGVMTVDDFLQNGIAKLDQNIEERVKRASSNGCVLRYVCMIEGSSVQVGIREVPKDSPLGRLRGSDNIVEIRSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDMQDLFP 378

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: A0A087G8W6_ARAAL (Homoserine dehydrogenase OS=Arabis alpina GN=AALP_AA8G232000 PE=3 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.654e-111
Identity = 177/244 (72.54%), Postives = 210/244 (86.07%), Query Frame = -3

Query: 1337 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSL--GESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2062
            MK IP+ LMGCGGVGR LLQHIVSCRS+H+K GV+LRV+GV DSKSL++  DV ++EL+D +L+E+C VKS GSSLSK+ +L  G  QVF++SESR    +IA  LGKSTGLA+VDCSA+ +TI VL + V+ GCCVVLANKKPLTST E YDK V +PR +RHESTVGAGLPVI+S+NRIISSGDP+H+IVGSLSGTLGYVMSE+EDGKPLSQVV++AK+LGYTEPDPRDDLSGMDVARK  I
Sbjct:    1 MKKIPVFLMGCGGVGRYLLQHIVSCRSIHSKLGVYLRVIGVCDSKSLLVPMDVLKEELNDEVLSEICIVKSTGSSLSKLGALEKGGYQVFNDSESRKVTEEIAERLGKSTGLAVVDCSATMDTIEVLMKAVDEGCCVVLANKKPLTSTMEHYDKLVLHPRHVRHESTVGAGLPVIASMNRIISSGDPVHKIVGSLSGTLGYVMSELEDGKPLSQVVRAAKTLGYTEPDPRDDLSGMDVARKALI 244

HSP 2 Score: 189.889 bits (481), Expect = 6.727e-50
Identity = 106/139 (76.26%), Postives = 123/139 (88.49%), Query Frame = -2

Query:  462 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLFP 878
            ++ALILARLLGKR+ + SIKIESLYPEEMGP  MSV++FLN  +V LD NIE+RVK+AS NG VLRYVCVIEG+   VGI+E+ K+S LGRLRGSDN++EIYSRCY +QPLVIQGAGAGNDTTAAGVLADILD+QDLFP
Sbjct:  240 RKALILARLLGKRVVMDSIKIESLYPEEMGPGLMSVDDFLNNEIVNLDQNIEDRVKRASSNGCVLRYVCVIEGSSVQVGIREVSKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADILDLQDLFP 378

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: D7M071_ARALL (Homoserine dehydrogenase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_910146 PE=3 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 6.198e-111
Identity = 175/239 (73.22%), Postives = 204/239 (85.36%), Query Frame = -3

Query: 1346 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARK 2062
            MK I ++LMGCGGVGR LLQHI SCRSLHAK GV LRVVGV DSKSL+   DV ++EL+D +L+EVCR+KS G +LSK+ +LG  +VF+ SE   +  +IA +LGKS GLA+VDCSAS ETI +L + V+LGCCVVLANKKPLTST E YDK   +PR IRHESTVGAGLPVI+S+NRIISSGDP+HRIVGSLSGTLGYVMSE+EDGKPLSQVV++AK+LGYTEPDPRDDLSGMDVARK
Sbjct:    1 MKKIAVLLMGCGGVGRHLLQHIASCRSLHAKMGVQLRVVGVCDSKSLVAPMDVLKEELNDELLSEVCRIKSSGLALSKLGALGGYRVFNASELSRETEEIAKLLGKSAGLAVVDCSASMETIEILMKAVDLGCCVVLANKKPLTSTLEHYDKLALHPRFIRHESTVGAGLPVIASLNRIISSGDPVHRIVGSLSGTLGYVMSELEDGKPLSQVVQAAKTLGYTEPDPRDDLSGMDVARK 239

HSP 2 Score: 192.2 bits (487), Expect = 8.548e-51
Identity = 105/138 (76.09%), Postives = 124/138 (89.86%), Query Frame = -2

Query:  465 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLF 878
            ++ LILARLLGKRI + SIKIES+YPEEMGP  MSV++FL+ G+V+LD NIEERVK+AS NG VLRYVCVIEG+   VGI+E+PK+S LGRLRGSDN++EIYSRCY +QPLVIQGAGAGNDTTAAGVLADI+D+QDLF
Sbjct:  238 RKGLILARLLGKRIIMDSIKIESMYPEEMGPGLMSVDDFLHNGIVKLDQNIEERVKRASSNGCVLRYVCVIEGSSVQVGIREVPKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDLQDLF 375

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: A0A059ABI7_EUCGR (Homoserine dehydrogenase OS=Eucalyptus grandis GN=EUGRSUZ_J00623 PE=3 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.497e-110
Identity = 177/243 (72.84%), Postives = 202/243 (83.13%), Query Frame = -3

Query: 1337 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLII-ASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARKVQI 2062
            MK + L+LMGCGGVGRQLL+HIVSCRSLHA QGVHLRVVGV DSKSL++ A D    ELDD  L EVCRVK DGSSLSK++  G  +VF++SE   KV ++ S LG    LA+VDCSASSET  +L   ++LGCC+VLANKKPLT+T E YDK VS PRRIRHESTV AGLP+I+S+NRI+SSGDP+HR+VGSLSGTLGYVMSEVEDGKPLSQVVK+AKSLGYTEPDPRDDL GMDVARK  I
Sbjct:    1 MKKMTLLLMGCGGVGRQLLRHIVSCRSLHATQGVHLRVVGVCDSKSLVVVAPDAHMLELDDKFLLEVCRVKEDGSSLSKLSGFGACRVFAHSELTAKVFNMVSHLG----LAVVDCSASSETTEILSRAIDLGCCIVLANKKPLTATMEYYDKLVSQPRRIRHESTVRAGLPIIASLNRILSSGDPVHRLVGSLSGTLGYVMSEVEDGKPLSQVVKTAKSLGYTEPDPRDDLGGMDVARKALI 239

HSP 2 Score: 193.741 bits (491), Expect = 2.243e-51
Identity = 105/139 (75.54%), Postives = 125/139 (89.93%), Query Frame = -2

Query:  462 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLFP 878
            ++ALILARLLG+RI + SIK+ESLYP+EMGP  MSV++FL+ G+  LD +I +RV KAS++G VLRYVCVIEG RC VGIQELP++S LGRLRGSDNVLE+Y+RCY++QPLVIQGAGAGNDTTAAGVLADILDIQDLFP
Sbjct:  235 RKALILARLLGRRITMDSIKVESLYPDEMGPTVMSVDDFLSKGLPLLDTSICKRVAKASVSGKVLRYVCVIEGTRCEVGIQELPRDSPLGRLRGSDNVLEVYTRCYNKQPLVIQGAGAGNDTTAAGVLADILDIQDLFP 373

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Match: Q8LF92_ARATH (Homoserine dehydrogenase OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 2.041e-110
Identity = 173/239 (72.38%), Postives = 205/239 (85.77%), Query Frame = -3

Query: 1346 MKIIPLILMGCGGVGRQLLQHIVSCRSLHAKQGVHLRVVGVSDSKSLIIASDVKQKELDDNILAEVCRVKSDGSSLSKITSLGESQVFSNSESRTKVLDIASILGKSTGLALVDCSASSETIGVLKEGVNLGCCVVLANKKPLTSTPEDYDKFVSYPRRIRHESTVGAGLPVISSINRIISSGDPIHRIVGSLSGTLGYVMSEVEDGKPLSQVVKSAKSLGYTEPDPRDDLSGMDVARK 2062
            MK IP++LMGCGGVGR LLQHIVSCRSLHAK GVH+RV+GV DSKSL+   DV ++EL+D +L+EVC +KS GS+LSK+ +LG  +V  +SE  T+  +IA +LGKSTGLA+VDCSAS ETI +L + V+LGCC+VLANKKP+TST E YDK   +PR IRHESTVGAGLPVI+S+NRIISSGDP+HRIVGSLS TLGYVMSE+EDGKPLSQVV++AK LGYTEPDPRDDL GMDVARK
Sbjct:    1 MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELNDELLSEVCLIKSTGSALSKLGALGGYRVVHDSELSTETEEIAKLLGKSTGLAVVDCSASMETIEILMKAVDLGCCIVLANKKPVTSTLEHYDKLALHPRFIRHESTVGAGLPVIASLNRIISSGDPVHRIVGSLSVTLGYVMSELEDGKPLSQVVQAAKKLGYTEPDPRDDLGGMDVARK 239

HSP 2 Score: 188.734 bits (478), Expect = 1.558e-49
Identity = 105/138 (76.09%), Postives = 122/138 (88.41%), Query Frame = -2

Query:  465 KQALILARLLGKRIDLGSIKIESLYPEEMGPNKMSVEEFLNGGVVRLDNNIEERVKKASLNGNVLRYVCVIEGARCNVGIQELPKNSALGRLRGSDNVLEIYSRCYSQQPLVIQXXXXXXXXXXXGVLADILDIQDLF 878
            ++ LILARLLGKRI + SIKIESLYPEEMGP  MSV++FL+ G+V+LD NIEERVKKAS  G VLRYVCVIEG+   VGI+E+ K+S LGRLRGSDN++EIYSRCY +QPLVIQGAGAGNDTTAAGVLADI+D+QDLF
Sbjct:  238 RKGLILARLLGKRIIMDSIKIESLYPEEMGPGLMSVDDFLHNGIVKLDQNIEERVKKASSKGCVLRYVCVIEGSSVQVGIREVSKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDLQDLF 375

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 20


Match Name	E-value	Identity	Description
AKH1_MAIZE	1.285e-27	34.02	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]
DHOM_YEAST	2.091e-26	32.14	Homoserine dehydrogenase OS=Saccharomyces cerevisi...	[more]
AKH_BUCAI	8.757e-26	30.20	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]
AKH_BUCAP	2.774e-25	29.27	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]
AKH_DAUCA	5.080e-25	32.50	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]
AKH_BUCBP	5.481e-25	28.93	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]
AKH2_MAIZE	7.549e-24	33.03	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]
AK1H_ECOLI	1.173e-23	32.17	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]
AKH2_ARATH	2.131e-23	34.17	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]
AKH1_ARATH	1.363e-22	32.71	Bifunctional aspartokinase/homoserine dehydrogenas...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097146 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A078FUD3_BRANA	1.924e-111	73.77	Homoserine dehydrogenase OS=Brassica napus GN=BnaC...	[more]
A0A087G8W6_ARAAL	4.654e-111	72.54	Homoserine dehydrogenase OS=Arabis alpina GN=AALP_...	[more]
D7M071_ARALL	6.198e-111	73.22	Homoserine dehydrogenase OS=Arabidopsis lyrata sub...	[more]
A0A059ABI7_EUCGR	1.497e-110	72.84	Homoserine dehydrogenase OS=Eucalyptus grandis GN=...	[more]
Q8LF92_ARATH	2.041e-110	72.38	Homoserine dehydrogenase OS=Arabidopsis thaliana P...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.360.10		coord: 193..242 e-value: 8.6E-23 score: 80.5
None	No IPR available	PANTHER	PTHR21499	ASPARTATE KINASE	coord: 1..239
None	No IPR available	PANTHER	PTHR21499:SF33	HOMOSERINE DEHYDROGENASE	coord: 1..239
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 17..242
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 12..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..11
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	SUPERFAMILY	55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	coord: 171..242
IPR001342	Homoserine dehydrogenase, catalytic	PFAM	PF00742	Homoserine_dh	coord: 171..242 e-value: 1.7E-21 score: 76.8
IPR016040	NAD(P)-binding domain	GENE3D	3.40.50.720		coord: 1..192 e-value: 1.5E-51 score: 174.5
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 1..190
IPR019811	Homoserine dehydrogenase, conserved site	PROSITE	PS01042	HOMOSER_DHGENASE	coord: 217..239

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097146 ID=g.barbadense_cottongen_reftransV1_0097146; Name=g.barbadense_cottongen_reftransV1_0097146; organism=Gossypium barbadense; type=contig; length=2253bp
GGTAATTATACTAATAAATTTGTCAAATCTTGATACCACCCATAAAAGTA
ATTCGTGTCATGTTTTTATTGAATGGTGTACATTTATTTAGGGGTAAAAT
AAGATATTTGATAATTAAGAGGCTCTAAAATACCTAAATGGGAAAATCGA
TATAGCTTGGGGGACAATTTTGTAGTTATTCCTTTTTCTTTTCTCTTTTT
AAGCTTTAGGTTTTCAAGAAACTAAGCTGACATAAAGTTTATTACGTATG
CAGGTTCTTCAAAAACTGAAGGGGACGCTTAGTCAGAGCCATGGGCGCTT
TGCACATTGTTTACCATGGAACATCCCCCGACAACATTCAGTAAGCTTGC
TCCGGACCAAAAATTATTCAGACATTCGAAAACTTCGAGTCTCTTAGCTT
CATTTTTGTAGGTGAAATACATGGCAAACTCGAGTTGTGTGACTCCCTCG
AATTTCTTTCAGGGAAACAGATCCTGAATGTCAAGGATATCAGCAAGCAC
GCCGGCTGCAGTAGTATCATTCCCAGCTCCCGCGCCTTGAATAACTAAGG
GTTGTTGACTATAGCATCGACTATATATTTCTAGCACATTGTCACTTCCC
CTCAGTCTTCCCAAAGCCGAATTCTTAGGAAGTTCTTGAATCCCGACATT
GCACCTTGCACCTTCTATCACGCAGACATAACGGAGGACATTCCCATTGA
GTGAAGCTTTTTTAACTCTCTCTTCGATATTGTTATCAAGCCTTACAACA
CCTCCATTCAAAAATTCTTCAACAGACATCTTATTAGGTCCCATTTCTTC
GGGATACAAGCTCTCAATCTTTATGCTACCTAAGTCAATGCGCTTCCCAA
GAAGTCGGGCAAGGATCAAAGCCTGTTTCAGAAAACTGAAACTACATGAC
ACATACTCGAAGCAATAATTAAAATTCCATAGTAACAAAATCAAATTCAC
TGCAGAATATTGATGCAAGTATGAAAGTCCATTTCATCACTTATAAATAA
AATATGTGATGGTGACTATCACTAATTCCAACTATAATCCATGAGTCTAA
GTATAAATCGATTTATGCATCAAGGGTTCCAGCCATTAGCAGAATTTATA
TGTTTAGGCCAAACCGAGTCATAGTAGTTTTCCTATGCAAAGACAACAAT
GGCTATTTAGTATTTATGCCTATGTTATATATATTTTACACATTTCTGTT
ATCATCGAACAGTAAACATCCAAATTGTTCTCAAGTTTACCATGCAAAAG
TTACTAATATTTAGAGACAGTTTATATTGATAAATGCAATGCATGCAATT
TATATCTGAGTAATCAAGAACATGGGAACATATTCATATTTGAACCTTCC
TGGCAACATCCATTCCACTGAGGTCATCTCGTGGATCTGGTTCAGTGTAT
CCTAAGCTTTTAGCAGACTTAACGACTTGGCTCAATGGTTTGCCATCTTC
AACCTCACTCATTACATAACCCAATGTACCGCTTAAACTTCCAACAATAC
GGTGGATGGGGTCTCCAGATGAAATTATGCGATTTATTGATGATATGACT
GGCAGACCAGCGCCAACAGTTGACTCATGCCGTATGCGGCGAGGATATGA
AACAAATTTGTCATAATCCTCCGGTGTTGATGTAAGAGGTTTTTTATTTG
CTAGAACAACACAGCAACCCAAGTTGACCCCTTCCTTTAGCACTCCAATC
GTCTCAGAACTGGCCGAGCAATCTACAAGGGCTAAACCTGTTGATTTTCC
AAGAATTGATGCAATGTCTAGCACTTTTGTCCTTGATTCTGAATTGGAGA
ACACTTGAGACTCACCTAAGCTAGTAATTTTGGACAATGAAGAACCATCT
GATTTTACCCTACAAACTTCAGCTAAAATGTTATCATCCAACTCTTTTTG
TTTAACATCTGATGCAATGATTAGTGATTTGCTATCAGATACTCCCACAA
CTCGTAAATGAACTCCCTGCTTGGCGTGAAGTGATCTGCAGGAAACAATG
TGTTGGAGGAGTTGGCGTCCAACACCTCCACAACCCATCAAAATTAAAGG
GATGATCTTCATCGTTTTGCTTTGTTGTTGATATTTCTGGTTTTTTGGGT
TTTCCTGTTATGAATCGAAAACTTTTGGGAAATTTTATACTGAATCGATA
AAAACAGTGGACACTGGGGATTGAAAAGAGAGTATTTTCGCAAAGTACCT
TCCCTACTCCTTTGATGGCTTTTAGTTAATTGGGTTAATATCGGTAAAAT
TCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001342	HDH_cat
IPR016040	NAD(P)-bd_dom
IPR019811	HDH_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006520	amino acid metabolic process
GO:0055114	obsolete oxidation-reduction process

Search form

g.barbadense_cottongen_reftransV1_0097146, g.barbadense_cottongen_reftransV1_0097146 (contig) Gossypium barbadense

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