g.barbadense_cottongen_reftransV1_0097136, g.barbadense_cottongen_reftransV1_0097136 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097136
Unique Name	g.barbadense_cottongen_reftransV1_0097136
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2172

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At12	chromosome	g.barbadense_cottongen_reftransV1_0097136:1..2172 . At12:3077982..3082262 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.289e-19
Identity = 57/142 (40.14%), Postives = 76/142 (53.52%), Query Frame = -1

Query: 1162 PTNVLQSW--DPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1581
            P  V  +W  + +   PC WF +TCD   +V  L+   S +SG LGPE+ +L+ LQ  +L  N+ SG IP  LGN   L  LDL  N F  +IP +   LK L  L L  N LTG +P  L  +  L+V  +  N+L G IP
Sbjct:   47 PPQVTSTWKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRIPKLQVLYLDYNNLTGPIP 188

HSP 2 Score: 66.6254 bits (161), Expect = 5.955e-10
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = -1

Query: 1162 VIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1497
            + R  L  +N+SG L PE +Q   L + +   N+  G IP  LG+ KNL  ++L  NRF G+IP     L++L ++ L+ N L GS+P +L+   +L+ FDV  N L G++P
Sbjct:  485 IRRFILRENNLSGLL-PEFSQDHSLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFDVGFNSLNGSVP 595

HSP 3 Score: 62.003 bits (149), Expect = 1.706e-8
Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = -1

Query: 1162 NISGTLGPELAQLQHLQYFELYKNDISGEIPKELGN------------------------LKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1470
            N+SGT+   L  L++L    L +N +SG IP ELGN                        L+ L  L+L+ NRF GEIP      +SL  L +  NNLTG +P E+T +  LK+  + NN   G IP
Sbjct:  302 NLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIP 428

HSP 4 Score: 57.7658 bits (138), Expect = 3.647e-7
Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = -1

Query: 1156 HVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVD 1500
            +++ LDL  +   G + P L     L    +   ++SG IP  LG LKNL  L+L  NR  G IP       SL  L+LN+N L G IP  L  L  L+  ++  N   G IP++
Sbjct:  268 NLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIE 382

HSP 5 Score: 56.9954 bits (136), Expect = 6.083e-7
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = -1

Query: 1162 LDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1488
            L L ++ + G +   L +L+ L+  EL++N  SGEIP E+   ++L  L +Y N   GE+P   + +K L+   L NN+  G+IP  L   S+L+  D   N L G IP
Sbjct:  344 LKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIP 452

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BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.963e-19
Identity = 61/162 (37.65%), Postives = 90/162 (55.56%), Query Frame = -1

Query: 1162 AISTNSEGNALHALRRRLSDPTNVLQSWDPT-LVNPCTWFHVTCDSHN-HVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1641
            A  T+ EG  L  +++   D  NVL  W  +   + C W  V+C++   +V+ L+L + N+ G + P +  L+ L   +L  N +SG+IP E+G+  +L  LDL  N   G+IP S S LK L  L L NN L G IP  L+ + NLK+ D++ N L G IP
Sbjct:   20 ATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIP 181

HSP 2 Score: 76.6406 bits (187), Expect = 4.768e-13
Identity = 44/109 (40.37%), Postives = 71/109 (65.14%), Query Frame = -1

Query: 1162 LDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1488
            L+L +++++G + PEL +L  L    +  ND+ G IP  L +  NL  L+++GN+F G IP++F  L+S+ +L L++NN+ G IP EL+ + NL   D+SNN + G IP
Sbjct:  336 LELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIP 444

HSP 3 Score: 70.0922 bits (170), Expect = 5.584e-11
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = -1

Query: 1102 LDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHFYCSLC 1488
            LDL N+ I+G +   L  L+HL    L +N I+G +P + GNL++++ +DL  N   G IP+  + L+++  LRL NNNLTG++      LS L V +VS+N+L G IP +  F  FS   +     LC
Sbjct:  432 LDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLS-LTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLC 559

HSP 4 Score: 66.6254 bits (161), Expect = 5.439e-10
Identity = 39/108 (36.11%), Postives = 68/108 (62.96%), Query Frame = -1

Query: 1165 LDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTI 1488
            L+L ++NI G +  EL+++ +L   +L  N I+G IP  LG+L++L+ ++L  N   G +P  F  L+S+  + L+NN+++G IP EL  L N+ +  + NN+L G +
Sbjct:  408 LNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNV 515

HSP 5 Score: 61.6178 bits (148), Expect = 2.024e-8
Identity = 54/151 (35.76%), Postives = 73/151 (48.34%), Query Frame = -1

Query: 1162 NVLQSWDPTLVNPCTWFHVTCDSHNH-------------VIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1575
            N L    P  +  CT F V   S+N              V  L L  + +SG +   +  +Q L   +L  N +SG IP  LGNL     L L+ N+  G IP     +  L +L LN+N+LTG IP EL  L++L   +V+NNDL G IP
Sbjct:  222 NSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIP 372

HSP 6 Score: 60.8474 bits (146), Expect = 3.841e-8
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = -1

Query: 1162 LDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1488
            LDL  + +SG++ P L  L   +   L+ N ++G IP ELGN+  L  L+L  N   G IP     L  L  L + NN+L G IP  L++ +NL   +V  N   GTIP
Sbjct:  288 LDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIP 396

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BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: Y1723_ARATH (Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 7.239e-19
Identity = 61/158 (38.61%), Postives = 86/158 (54.43%), Query Frame = -1

Query: 1162 STNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1635
            S N EG  L   +  L+D    L SW+    NPC W  + C     V  +DL   N+SGTL P + +L  L+   +  N ISG IP++L   ++L  LDL  NRF G IP   + + +L+ L L  N L GSIPR++  LS+L+   + +N+L G IP
Sbjct:   23 SLNEEGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIP 180

HSP 2 Score: 71.633 bits (174), Expect = 1.873e-11
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = -1

Query: 1165 TCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTI 1518
            TC S   + +L LG++ ++G+L  EL  LQ+L   EL++N +SG I  +LG LKNL  L L  N F GEIP     L  +    +++N LTG IP+EL +   ++  D+S N   G I
Sbjct:  449 TCKS---LTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYI 563

HSP 3 Score: 68.5514 bits (166), Expect = 1.867e-10
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = -1

Query: 1147 SGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPF 1464
            +G++  E+ +L  ++   LY N ++GEIP+E+GNL +   +D   N+  G IPK F  + +L+ L L  N L G IPREL  L+ L+  D+S N L GTIP +  F
Sbjct:  272 TGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQF 377

HSP 4 Score: 67.781 bits (164), Expect = 2.720e-10
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = -1

Query: 1162 LDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1488
            L+L  + +SG +  +L +L++L+   L  N+ +GEIP E+GNL  +VG ++  N+  G IPK      +++ L L+ N  +G I +EL  L  L++  +S+N L G IP
Sbjct:  480 LELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIP 588

HSP 5 Score: 67.0106 bits (162), Expect = 4.541e-10
Identity = 44/109 (40.37%), Postives = 61/109 (55.96%), Query Frame = -1

Query: 1162 LDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1488
            L L  + + G+L  +L +LQ+L    L++N +SGEIP  +GN+  L  L L+ N F G IP+    L  ++ L L  N LTG IPRE+  L +    D S N L G IP
Sbjct:  216 LGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIP 324

HSP 6 Score: 66.6254 bits (161), Expect = 6.557e-10
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = -1

Query: 1162 GNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1479
            G +  SG +  E++  + L+   L +N + G +PK+L  L+NL  L L+ NR  GEIP S   +  L  L L+ N  TGSIPRE+  L+ +K   +  N L G IP
Sbjct:  195 GRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIP 300

HSP 7 Score: 66.2402 bits (160), Expect = 8.545e-10
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = -1

Query: 1162 RLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFE------------------------GEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKV-FDVSNNDLCGTIP 1491
            RL L N+N +G + PE+  L  +  F +  N ++G IPKELG+   +  LDL GN+F                         GEIP SF  L  L  L+L  N L+ +IP EL  L++L++  ++S+N+L GTIP
Sbjct:  503 RLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIP 637

HSP 8 Score: 63.5438 bits (153), Expect = 5.738e-9
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = -1

Query: 1162 LDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1488
            L L  + +SG + P +  +  L+   L++N  +G IP+E+G L  +  L LY N+  GEIP+    L     +  + N LTG IP+E   + NLK+  +  N L G IP
Sbjct:  240 LILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIP 348

HSP 9 Score: 63.1586 bits (152), Expect = 8.497e-9
Identity = 51/161 (31.68%), Postives = 72/161 (44.72%), Query Frame = -1

Query: 1090 VIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGN-------------------------RFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHFYCSLC*SSQ 1497
            + RLDL  +  SG +  EL QL +L+   L  N ++GEIP   G+L  L+ L L GN                            G IP S   L+ L  L LN+N L+G IP  +  L +L + ++SNN+L GT+P    F       +     LC S +
Sbjct:  549 IQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQR 709

HSP 10 Score: 59.6918 bits (143), Expect = 8.017e-8
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = -1

Query: 1156 RLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVD 1491
            +LDL  + ++GT+  EL  L +L   +L+ N + G+IP  +G   N   LD+  N   G IP  F   ++L  L L +N L+G+IPR+L    +L    + +N L G++P++
Sbjct:  359 KLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIE 470

HSP 11 Score: 58.151 bits (139), Expect = 2.715e-7
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = -1

Query: 1159 RLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPV 1491
             +D   + ++G +  E   + +L+   L++N + G IP+ELG L  L  LDL  NR  G IP+    L  L  L+L +N L G IP  +   SN  V D+S N L G IP 
Sbjct:  311 EIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPA 421

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BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: Y1668_ARATH (Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.247e-18
Identity = 58/161 (36.02%), Postives = 86/161 (53.42%), Query Frame = -1

Query: 1162 AISTNSEGNALHALRRRLSDPTN-VLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1641
            A S N +G AL + ++ + + ++ V  +W+ +  NPC+W  VTC+    V+ + L N  +SG+L P +  L  L++  L  ND  G++P EL  LK L  L L GN F G +P+    LKSL  L L+ N+  GSI   L     LK   +S N   G +P
Sbjct:   19 ATSLNDQGLALLSFKQSIQNQSDSVFTNWNSSDSNPCSWQGVTCNYDMRVVSIRLPNKRLSGSLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGSLKSLMTLDLSENSFNGSISLSLIPCKKLKTLVLSKNSFSGDLP 179

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BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.755e-18
Identity = 67/175 (38.29%), Postives = 86/175 (49.14%), Query Frame = -1

Query: 1102 EGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSH-NHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHFYCSLC 1623
            +G AL + R  +     V+  W P   +PC W  VTCD+    VI L L    + G L PEL +L  L+   L+ N +   IP  LGN   L G+ L  N   G IP     L  L+ L L+NNNL G+IP  L  L  L  F+VSNN L G IP DG     S   ++   +LC
Sbjct:   32 DGEALLSFRNGVLASDGVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNFLVGKIPSDGLLARLSRDSFNGNRNLC 206

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: A0A0D2TV04_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G020900 PE=4 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 2.255e-112
Identity = 196/200 (98.00%), Postives = 199/200 (99.50%), Query Frame = -1

Query: 1102 MAPLAVIXXXXXXXXXXXXPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHFYCSLC 1701
            MAPL+VISLSLCFLLPLLSPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFH+TCDS+NHVIRLDLGNSNISGTLGPELAQLQHLQY ELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSLRFLRLNNNNLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHFYCSLC
Sbjct:    1 MAPLSVISLSLCFLLPLLSPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHITCDSNNHVIRLDLGNSNISGTLGPELAQLQHLQYLELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSLRFLRLNNNNLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHFYCSLC 200

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: A0A0D2TV00_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G020900 PE=4 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 1.491e-104
Identity = 188/193 (97.41%), Postives = 191/193 (98.96%), Query Frame = -1

Query: 1123 MAPLAVIXXXXXXXXXXXXPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRY 1701
            MAPL+VISLSLCFLLPLLSPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFH+TCDS+NHVIRLDLGNSNISGTLGPELAQLQHLQY ELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSLRFLRLNNNNLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMP Y
Sbjct:    1 MAPLSVISLSLCFLLPLLSPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHITCDSNNHVIRLDLGNSNISGTLGPELAQLQHLQYLELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSLRFLRLNNNNLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPSY 193

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: A0A0D2PLZ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G020900 PE=4 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.169e-101
Identity = 187/193 (96.89%), Postives = 190/193 (98.45%), Query Frame = -1

Query: 1123 MAPLAVIXXXXXXXXXXXXPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRY 1701
            MAPL+VISLSLCFLLPLLSPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFH+TCDS+NHVIRLDLGNSNISGTLGPELAQLQHLQ  ELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSLRFLRLNNNNLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMP Y
Sbjct:    1 MAPLSVISLSLCFLLPLLSPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHITCDSNNHVIRLDLGNSNISGTLGPELAQLQHLQ--ELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSLRFLRLNNNNLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPSY 191

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: A0A061E0C6_THECC (Leucine-rich repeat family protein OS=Theobroma cacao GN=TCM_007197 PE=4 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 4.946e-90
Identity = 153/170 (90.00%), Postives = 160/170 (94.12%), Query Frame = -1

Query: 1132 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSM 1641
            AISTNSEGNALHALR RLSDPTNVLQSWDPTLVNPCTWFHVTCDS+NHVIRLDLGNSNISG LGPEL QLQHLQY ELYKNDI G+IPKELGNLK+LVG+DLYGN+FEGEIPKSF+ LKSLRFLRLNNN LTGSIPRELT L NLKVFDVSNNDLCGTIPVDGPF MFS+
Sbjct:  133 AISTNSEGNALHALRSRLSDPTNVLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNISGILGPELGQLQHLQYLELYKNDIRGKIPKELGNLKDLVGMDLYGNKFEGEIPKSFAKLKSLRFLRLNNNKLTGSIPRELTTLLNLKVFDVSNNDLCGTIPVDGPFSMFSL 302

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: W9R971_9ROSA (Somatic embryogenesis receptor kinase 1 OS=Morus notabilis GN=L484_011518 PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.188e-87
Identity = 146/173 (84.39%), Postives = 160/173 (92.49%), Query Frame = -1

Query: 1123 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRY 1641
            A+STNSEGNALHALR +LSDPTNVLQSWDPTLVNPCTWFHVTCDS++HVIRLDLGNSNISGTLGPEL +L+HLQY ELY+NDISG IPKELGNLKNL+G+DLY N+FEGEIPKSF+ LKSL+FLRLNNN LTGSIPRELT LSNLKVFDVS+NDLCGTIPVDGPF  F M  +
Sbjct:   22 ALSTNSEGNALHALRSKLSDPTNVLQSWDPTLVNPCTWFHVTCDSNSHVIRLDLGNSNISGTLGPELGKLKHLQYLELYRNDISGRIPKELGNLKNLIGMDLYDNKFEGEIPKSFAKLKSLKFLRLNNNKLTGSIPRELTTLSNLKVFDVSSNDLCGTIPVDGPFTTFPMESF 194

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: A0A0A0K4G9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071480 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.827e-86
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = -1

Query: 1123 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRY 1641
             ISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDS NHVIRLDLGNSNISGTLGPE+  LQHLQY ELY+N +SG+IP ELGNLKNLV +DLY N+FEG+IPKSF+ L+SLRFLR+NNN LTGSIPREL +LS LK+FDVSNNDLCGTIPVDGPF  FSM  Y
Sbjct:   20 VISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSDNHVIRLDLGNSNISGTLGPEIGDLQHLQYLELYRNGLSGKIPTELGNLKNLVSMDLYENKFEGKIPKSFAKLESLRFLRMNNNKLTGSIPRELASLSKLKIFDVSNNDLCGTIPVDGPFATFSMESY 192

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: M5VIS3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb009520mg PE=4 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 6.637e-86
Identity = 154/194 (79.38%), Postives = 171/194 (88.14%), Query Frame = -1

Query: 1120 MAPLAVIXXXXXXXXXXXXPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYH 1701
            MAPL+++S  L FLL +   A STNSEGNALHALR RL+D TNVLQSWDPTLVNPCTWFHVTCDS+NHVIRLDLGNSNISG+LGPEL +L+HLQY ELY+NDISG+IP ELG LK+LV +DLY NRFEG+IPKSFS LKSLRFLRLNNN LTGSIPREL +LS+LKVFDVSNNDLCGTIPVDGPFG FSM  + 
Sbjct:    1 MAPLSIVSSFLTFLLCISP-AFSTNSEGNALHALRSRLNDATNVLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNISGSLGPELGELKHLQYLELYRNDISGKIPNELGKLKSLVSMDLYDNRFEGKIPKSFSKLKSLRFLRLNNNKLTGSIPRELVSLSSLKVFDVSNNDLCGTIPVDGPFGTFSMESFE 193

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: B9GHW1_POPTR (Putative leucine-rich repeat family protein OS=Populus trichocarpa GN=POPTR_0001s30370g PE=4 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 7.939e-86
Identity = 144/174 (82.76%), Postives = 157/174 (90.23%), Query Frame = -1

Query: 1120 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYH 1641
            ++STNSEGNALHALR RLSDPTNVLQSWDPTLVNPCTWFHVTCDS NHV RLDLGNSNISGTLGPEL +L+HL+Y ELY+NDI G+IPKELGNLKNLV +D+YGNRFEGEIPKSF+ LKSLRFLRLNNN L+GSIPRELT L +LKVFDVSNNDLCGTIPVDGPF  F M  + 
Sbjct:   20 SLSTNSEGNALHALRSRLSDPTNVLQSWDPTLVNPCTWFHVTCDSSNHVTRLDLGNSNISGTLGPELGELRHLKYLELYRNDIGGKIPKELGNLKNLVSMDMYGNRFEGEIPKSFAKLKSLRFLRLNNNKLSGSIPRELTTLKDLKVFDVSNNDLCGTIPVDGPFTSFPMESFE 193

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: A0A0D2SSU4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G020900 PE=4 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.295e-85
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = -1

Query: 1198 MAPLAVIXXXXXXXXXXXXPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVF 1701
            MAPL+VISLSLCFLLPLLSPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFH+TCDS+NHVIRLDLGNSNISGTLGPELAQLQHLQY ELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSLRFLRLNNNNLTGSIPRELTALSNLKV 
Sbjct:    1 MAPLSVISLSLCFLLPLLSPAISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHITCDSNNHVIRLDLGNSNISGTLGPELAQLQHLQYLELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSLRFLRLNNNNLTGSIPRELTALSNLKVL 168

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: B9SNC0_RICCO (Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0174740 PE=4 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 5.750e-85
Identity = 144/171 (84.21%), Postives = 154/171 (90.06%), Query Frame = -1

Query: 1120 TNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYH 1632
            TNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDS+NHVIRLDLGNSNISGTLGPEL QLQHLQY ELY+N+I G+IPKELGNLKNLV +DLY N+FEG IPK+ + LKSLRFLRLNNN LTGSIPRELT L +LKVFDVSNNDLCGTIPVDGPF  F M  + 
Sbjct:   23 TNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNISGTLGPELGQLQHLQYLELYRNEIGGKIPKELGNLKNLVSMDLYENKFEGRIPKTLAKLKSLRFLRLNNNKLTGSIPRELTTLKDLKVFDVSNNDLCGTIPVDGPFSTFPMESFE 193

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
PEPR1_ARATH	2.289e-19	40.14	Leucine-rich repeat receptor-like protein kinase P...	[more]
ERECT_ARATH	5.963e-19	37.65	LRR receptor-like serine/threonine-protein kinase ...	[more]
Y1723_ARATH	7.239e-19	38.61	Leucine-rich repeat receptor-like serine/threonine...	[more]
Y1668_ARATH	1.247e-18	36.02	Probable inactive leucine-rich repeat receptor-lik...	[more]
FEI2_ARATH	1.755e-18	38.29	LRR receptor-like serine/threonine-protein kinase ...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2TV04_GOSRA	2.255e-112	98.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TV00_GOSRA	1.491e-104	97.41	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PLZ4_GOSRA	1.169e-101	96.89	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061E0C6_THECC	4.946e-90	90.00	Leucine-rich repeat family protein OS=Theobroma ca...	[more]
W9R971_9ROSA	2.188e-87	84.39	Somatic embryogenesis receptor kinase 1 OS=Morus n...	[more]
A0A0A0K4G9_CUCSA	2.827e-86	83.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
M5VIS3_PRUPE	6.637e-86	79.38	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
B9GHW1_POPTR	7.939e-86	82.76	Putative leucine-rich repeat family protein OS=Pop...	[more]
A0A0D2SSU4_GOSRA	2.295e-85	97.02	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9SNC0_RICCO	5.750e-85	84.21	Serine-threonine protein kinase, plant-type, putat...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 104..260 e-value: 1.7E-46 score: 157.8
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 103..262
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	PFAM	PF08263	LRRNT_2	coord: 104..143 e-value: 1.4E-9 score: 38.0
IPR001611	Leucine-rich repeat	PFAM	PF00560	LRR_1	coord: 195..217 e-value: 1.5 score: 9.4
None	No IPR available	PANTHER	PTHR27001:SF224	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	coord: 84..267
None	No IPR available	PANTHER	PTHR27001	FAMILY NOT NAMED	coord: 84..267
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 98..279
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..97
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 65..70
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..64
None	No IPR available	TMHMM	TMhelix		coord: 70..92
None	No IPR available	TMHMM	TMhelix		coord: 41..63

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097136 ID=g.barbadense_cottongen_reftransV1_0097136; Name=g.barbadense_cottongen_reftransV1_0097136; organism=Gossypium barbadense; type=contig; length=2172bp
GACTATTAAGATATTTTAACCTAAATTTAACCATATCCTTAAAGAATAAT
GGCAAATATTAATCAAAACAAAATATAGCAATATTATGGTGATAAATTTA
CATTTTAACCCTTTTATCTTTACTACATATACCCCAACCCATCTTTATAG
AATTTGCAGTTTCGCCCCTCTTTGAACAGTCTTCCCTAAGGCCTTAAGTC
CCTACTTCGATGTCCATTCAATAAGACATGAGTTTCAAGGTAAAGATATC
AATATATGTATATATTGATAGCATGACCAACTCTAACAACGATATTTCAT
GCTTGACATGTAAAAAAATCAAAAGGCTTAAAACCTAGCATCATGTTATT
TTATAGATTATATAGATACAGAGTAGAGCATCTCACTATCCACTCCTACA
TAAAAATCAGCATGGGGATGTCACCAGGGATTTTGCGCTCATGAGTTTGA
CAAACATTGGTTTCTTCAGCAGCCGAAGTTATAAGGCACGAGTCCTTTCA
GCTCTGGCCCATTCAAGCGCATGTTGCTTGCATAGCTGGAACACAGAGAG
CAATCGAAAATCATGACATCAAAACAAAACAAGCAACTGCACTTTTGCCT
ATTAACATTTTTTCTTTCACCATAACGTATTAGCTTAAATTTTTTGACTT
TGTGATAAAGGCGGTGCTACGGCCTCACATTCTGTTACAACTACTTGGAC
ACCATATCATGAACATTATTACACACATGCAGATAGCCTGTGTTTTAGGT
GAAGTCAGGTGTTAAGCATATTCCCATTACTTGAACTTAATATAATCAAA
ATAGTATTAGGCTTCTACTTTTGCAGCTAATTCCTTTCACTCCCAAGGCA
ATCATTCGAAAGCAATTCTCATAGTGCACTAATGTCCGATGCAAGCAGCA
GTTACATCTATGCAGGCATCACTAGTACATGTCCTAATGGATACACCTAG
CATTCATGCAAATAGATTAGAGGGCTCAGTTACTTCCATCTCATTCTCAT
GCTTCTTCTTCAAGCAATGAACACATACAACCACATCGACTTCTTACAAT
TTTTATATTTAAAAAAGGGCTTAAAAGCTTGTAAATCAACTGTGATGATC
AACAGAGAGAGCAATAAAAATGGTACCTTGGCATTGAGAACATCCCGAAA
GGGCCATCAACCGGGATAGTCCCGCAGAGATCATTATTAGAAACATCGAA
TACTTTAAGGTTAGAGAGGGCAGTAAGCTCCCGTGGAATGGATCCTGTCA
AGTTATTGTTGTTCAGACGAAGGAATCTCAGTGACTTCAGTCCGGAAAAA
GACTTGGGAATTTCTCCTTCGAACCGGTTACCATACAAATCCAAGCCAAC
AAGGTTCTTCAGATTCCCCAACTCCTTTGGAATTTCCCCACTTATGTCAT
TTTTGTACAGCTCGAAGTACTGGAGATGTTGGAGTTGAGCTAGCTCAGGA
CCCAAAGTTCCAGAGATATTAGAGTTCCCCAAGTCCAAGCGAATCACATG
ATTGTGGGAATCACAGGTGACATGAAACCAAGTACAGGGATTGACAAGCG
TAGGGTCCCAACTCTGCAACACATTGGTAGGGTCAGAAAGCCTCCTCCTT
AAAGCATGCAGAGCATTTCCTTCAGAGTTAGTTGAAATGGCAGGGGAAAG
AAGTGGAAGGAGAAAACAAAGGGACAAGGAAATCACAGCGAGAGGAGCCA
TTTGCAGATGGAGAGAAAGGATGAAGAAGAAAGAACCGAACTCAGAGAAG
AAAAAAAGGGTTAATAGGGAAGGAGAGAGATAGCAGATAGAAATGAAGGA
AGTAAAAAAGCGAGTCAAATGTGGTGGAAATGCATGAAGAAATAGAGTTT
TCTTTTTAAAAATTGAAGTTGGTTTGGAGCAGAAAGAAAGAAAGAAAGAG
AAATGGGAAAGTGGGGAGTGGTGGAAAAGGTCACACAATGGGCGTGTGTG
CCGCGTGGATTTGGTCCCCACTTTGGAGGCTGCTTCGCCTCAGTTCAGTT
GAGTTCTCAAGCCTACTCTCTCTGACTTTCTTCTTTCTTGGACTCTACTT
AACAGTGATGAAACTTGGAAGCTTCCTCCCTCTTCTCTTCCACCTTTACT
TATTCCAATACTTTTTCCTGTAATTACTACATAAACCTATTTTTTTCTTC
ATGATCTCGATTTCAATAAGGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR013210	LRR_N_plant-typ
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.barbadense_cottongen_reftransV1_0097136, g.barbadense_cottongen_reftransV1_0097136 (contig) Gossypium barbadense

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