g.barbadense_cottongen_reftransV1_0097136, g.barbadense_cottongen_reftransV1_0097136 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097136
Unique Name	g.barbadense_cottongen_reftransV1_0097136
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2172

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At12	chromosome	g.barbadense_cottongen_reftransV1_0097136:1..2172 . At12:3077982..3082262 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 5.008e-52
Identity = 108/178 (60.67%), Postives = 130/178 (73.03%), Query Frame = -1

Query: 1102 STNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHFYCSLC 1635
            S N EG+ALH LR  L DP NVLQSWDPTLVNPCTWFHVTC++ N VIR+DLGN+ +SG L PEL  L++LQY ELY N+I+G IP  LGNL NLV LDLY N F G IP+S   L  LRFLRLNNN+LTGSIP  LT ++ L+V D+SNN L G++P +G F +F+   +     LC
Sbjct:   25 SANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLC 202

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 5.044e-52
Identity = 106/178 (59.55%), Postives = 132/178 (74.16%), Query Frame = -1

Query: 1102 STNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHFYCSLC 1635
            S+N EG+ALH+LR  L DP NVLQSWDPTLVNPCTWFHVTC++ N VIR+DLGN+++SG L P+L QL++LQY ELY N+I+G +P +LGNL NLV LDLY N F G IP S   L  LRFLRLNNN+LTG IP  LT +  L+V D+SNN L G++P +G F +F+   +     LC
Sbjct:   28 SSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLC 205

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 1.698e-49
Identity = 102/168 (60.71%), Postives = 126/168 (75.00%), Query Frame = -1

Query: 1135 ISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFS 1638
            +S N+EG+AL AL+  L+DP  VLQSWD TLV PCTWFHVTC+S N V R+DLGN+N+SG L  +L QL +LQY ELY N+I+G IP++LGNL  LV LDLY N   G IP +   LK LRFLRLNNN+L+G IPR LTA+  L+V D+SNN L G IPV+G F +F+
Sbjct:   23 VSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFT 190

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.700e-45
Identity = 101/171 (59.06%), Postives = 124/171 (72.51%), Query Frame = -1

Query: 1135 ISTNSEGNALHALRRRLS--DPTN-VLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFS 1638
            ++ N+EG+AL  L+  LS  DP N VLQSWD TLV PCTWFHVTC+  N V R+DLGN+ +SG L PEL QL +LQY ELY N+I+GEIP+ELG+L  LV LDLY N   G IP S   L  LRFLRLNNN+L+G IP  LT++  L+V D+SNN L G IPV+G F +F+
Sbjct:   27 VAGNAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSV-QLQVLDISNNRLSGDIPVNGSFSLFT 196

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 4.616e-42
Identity = 95/171 (55.56%), Postives = 121/171 (70.76%), Query Frame = -1

Query: 1135 ISTNSEGNALHALRRRLSD---PTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFS 1638
            ++  ++ +AL ALR  LS      N+LQSW+ T V PC+WFHVTC++ N V RLDLG++N+SG L P+LAQL +LQY EL+ N+I+GEIP+ELG+L  LV LDL+ N   G IP S   L  LRFLRL NN+L+G IPR LTAL  L V D+SNN L G IPV+G F  F+
Sbjct:   22 VTGKTQVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTALP-LDVLDISNNRLSGDIPVNGSFSQFT 191

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.925e-24
Identity = 74/174 (42.53%), Postives = 100/174 (57.47%), Query Frame = -1

Query: 1117 ISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYHF 1638
            +S +++G+AL ALR  L    N L  W+   VNPCTW  V CD  N V  L L + N SGTL   +  L++L+   L  N I+GEIP++ GNL +L  LDL  N+  G IP +   LK L+FL L+ N L G+IP  LT L NL    + +N L G IP      +F +P+Y+F
Sbjct:   25 VSPDAQGDALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQ----SLFEIPKYNF 194

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: NIK1_ARATH (Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.072e-24
Identity = 71/157 (45.22%), Postives = 95/157 (60.51%), Query Frame = -1

Query: 1162 TNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1632
             N E  AL  ++  L DP  VL +WD   V+PC+W  VTC S N VI L   + N+SGTL P +  L +L+   L  N+I G+IP E+G L  L  LDL  N F GEIP S   L+SL++LRLNNN+L+G  P  L+ ++ L   D+S N+L G +P
Sbjct:   38 VNFEVQALMDIKASLHDPHGVLDNWDRDAVDPCSWTMVTCSSENFVIGLGTPSQNLSGTLSPSITNLTNLRIVLLQNNNIKGKIPAEIGRLTRLETLDLSDNFFHGEIPFSVGYLQSLQYLRLNNNSLSGVFPLSLSNMTQLAFLDLSYNNLSGPVP 194

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: NIK3_ARATH (Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.487e-23
Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = -1

Query: 1162 TNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1632
             N E  AL A++  L+DP  VL++WD   V+PC+W  V+C +  +V  LDL + ++SGTL P +  L +LQ   L  N I+G IP+ +G L+ L  LDL  N F GEIP S   LK+L +LRLNNN+L G+ P  L+ +  L + D+S N+L G++P
Sbjct:   32 VNYEVTALVAVKNELNDPYKVLENWDVNSVDPCSWRMVSC-TDGYVSSLDLPSQSLSGTLSPRIGNLTYLQSVVLQNNAITGPIPETIGRLEKLQSLDLSNNSFTGEIPASLGELKNLNYLRLNNNSLIGTCPESLSKIEGLTLVDISYNNLSGSLP 187

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: NIK2_ARATH (Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.226e-23
Identity = 70/157 (44.59%), Postives = 97/157 (61.78%), Query Frame = -1

Query: 1162 TNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1632
             N E  AL  ++  L+DP  VL +WD T V+PC+W  +TC S   VIRL+  + N+SGTL   +  L +LQ   L  N I+G IP E+G L  L  LDL  N F G+IP + S  K+L++LR+NNN+LTG+IP  L  ++ L   D+S N+L G +P
Sbjct:   39 VNFEVVALIGIKSSLTDPHGVLMNWDDTAVDPCSWNMITC-SDGFVIRLEAPSQNLSGTLSSSIGNLTNLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYLRVNNNSLTGTIPSSLANMTQLTFLDLSYNNLSGPVP 194

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Match: Y4052_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.123e-22
Identity = 68/156 (43.59%), Postives = 93/156 (59.62%), Query Frame = -1

Query: 1162 NSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIP 1629
            N E  AL ++R  L DP   L +WD   V+PC+W  +TC   N VI L   + ++SG L   +  L +L+   L  N+ISG+IP ELG L  L  LDL  NRF G+IP S   L SL++LRLNNN+L+G  P  L+ + +L   D+S N+L G +P
Sbjct:   35 NPEVEALISIRNNLHDPHGALNNWDEFSVDPCSWAMITCSPDNLVIGLGAPSQSLSGGLSESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNNRFSGDIPVSIDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLSGPVP 190

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: C6ZS01_SOYBN (Leucine-rich repeat family protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.567e-80
Identity = 135/174 (77.59%), Postives = 155/174 (89.08%), Query Frame = -1

Query: 1120 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYH 1641
            ++STN EGNALHALR R+SDP NVLQSWDPTLVNPCTWFHVTCDS+NHVIRLDLGNSN+SGTLGPEL QLQHLQY ELY+N+++G+IPKELGNLK+L+ +DLY N+ EG+IPKSF  LKSL+FLRLNNN LTGSIPRELT L+NLK+FDVSNNDLCGTIPV+G F  F M  + 
Sbjct:   20 SLSTNPEGNALHALRSRISDPNNVLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNELTGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTNLKIFDVSNNDLCGTIPVEGNFESFPMESFE 193

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: A0A0B2PGT1_GLYSO (Somatic embryogenesis receptor kinase 1 OS=Glycine soja GN=glysoja_021339 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.586e-80
Identity = 135/173 (78.03%), Postives = 155/173 (89.60%), Query Frame = -1

Query: 1123 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRY 1641
            ++STN EGNALHALR RLSDP N+LQSWDPTLVNPCTWFHVTCDS+NHVIRLDLGNSN+SGTLGPEL QLQHLQY ELY+N+I+G+IPKELGNLK+L+ +DLY N+ EG+IPKSF  LKSL+FLRLNNN LTGSIPRELT L++LK+FDVSNNDLCGTIPV+G F  F M  +
Sbjct:   20 SLSTNPEGNALHALRSRLSDPNNMLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNEITGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTDLKIFDVSNNDLCGTIPVEGNFESFPMESF 192

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: C6SZB6_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 3.586e-80
Identity = 135/173 (78.03%), Postives = 155/173 (89.60%), Query Frame = -1

Query: 1123 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRY 1641
            ++STN EGNALHALR RLSDP N+LQSWDPTLVNPCTWFHVTCDS+NHVIRLDLGNSN+SGTLGPEL QLQHLQY ELY+N+I+G+IPKELGNLK+L+ +DLY N+ EG+IPKSF  LKSL+FLRLNNN LTGSIPRELT L++LK+FDVSNNDLCGTIPV+G F  F M  +
Sbjct:   20 SLSTNPEGNALHALRSRLSDPNNMLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNEITGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTDLKIFDVSNNDLCGTIPVEGNFESFPMESF 192

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: M1CFN7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025848 PE=4 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 5.433e-80
Identity = 137/170 (80.59%), Postives = 151/170 (88.82%), Query Frame = -1

Query: 1132 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSM 1641
            A STNSEG ALH+LR +LSDP NVLQSWDPTLVNPCTWFHVTCDS N+VIRLDLGNSNISGTLGPEL +L++LQY ELY N+I GEIPKE G+L+NL+ +DLYGNRFEG IPKSF+ LKSLRFLRLN+N LTGSIPRELT L NLKVFDVSNN+LCGTIP DGPFG F M
Sbjct:   20 AFSTNSEGTALHSLRTKLSDPKNVLQSWDPTLVNPCTWFHVTCDSDNNVIRLDLGNSNISGTLGPELGELKNLQYLELYSNNIEGEIPKEFGDLENLISMDLYGNRFEGNIPKSFAKLKSLRFLRLNDNKLTGSIPRELTTLPNLKVFDVSNNNLCGTIPADGPFGSFPM 189

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Match: I3SX74_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 7.313e-80
Identity = 136/174 (78.16%), Postives = 152/174 (87.36%), Query Frame = -1

Query: 1120 AISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSHNHVIRLDLGNSNISGTLGPELAQLQHLQYFELYKNDISGEIPKELGNLKNLVGLDLYGNRFEGEIPKSFSGLKSXXXXXXXXXXLTGSIPRELTALSNLKVFDVSNNDLCGTIPVDGPFGMFSMPRYH 1641
            ++STN EGNALH LR RLSDP NVLQSWDPTLVNPCTWFHVTC+S+NHVIRLDLGN+N+SGTLGPEL QL HLQY ELYKND+ G+IPKELGNLK L+ +DLY N+FEG+IPKSF  LKSL+FLRLNNN L+GSIPRELT L NLK+FDVSNNDLCGTIPVDG FG F M  + 
Sbjct:   20 SLSTNPEGNALHDLRSRLSDPNNVLQSWDPTLVNPCTWFHVTCNSNNHVIRLDLGNANVSGTLGPELGQLHHLQYLELYKNDLRGKIPKELGNLKTLINMDLYDNKFEGKIPKSFGKLKSLKFLRLNNNELSGSIPRELTHLPNLKIFDVSNNDLCGTIPVDGNFGSFPMESFE 193

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
SERK1_ARATH	5.008e-52	60.67	Somatic embryogenesis receptor kinase 1 OS=Arabido...	[more]
SERK2_ARATH	5.044e-52	59.55	Somatic embryogenesis receptor kinase 2 OS=Arabido...	[more]
BAK1_ARATH	1.698e-49	60.71	BRASSINOSTEROID INSENSITIVE 1-associated receptor ...	[more]
SERK4_ARATH	2.700e-45	59.06	Somatic embryogenesis receptor kinase 4 OS=Arabido...	[more]
SERK5_ARATH	4.616e-42	55.56	Somatic embryogenesis receptor kinase 5 OS=Arabido...	[more]
Y5129_ARATH	1.925e-24	42.53	Probable LRR receptor-like serine/threonine-protei...	[more]
NIK1_ARATH	2.072e-24	45.22	Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis th...	[more]
NIK3_ARATH	1.487e-23	43.95	Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis th...	[more]
NIK2_ARATH	2.226e-23	44.59	Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis th...	[more]
Y4052_ARATH	2.123e-22	43.59	Probable LRR receptor-like serine/threonine-protei...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0097136 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
C6ZS01_SOYBN	1.567e-80	77.59	Leucine-rich repeat family protein OS=Glycine max ...	[more]
A0A0B2PGT1_GLYSO	3.586e-80	78.03	Somatic embryogenesis receptor kinase 1 OS=Glycine...	[more]
C6SZB6_SOYBN	3.586e-80	78.03	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
M1CFN7_SOLTU	5.433e-80	80.59	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
I3SX74_LOTJA	7.313e-80	78.16	Uncharacterized protein OS=Lotus japonicus PE=2 SV...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 104..260 e-value: 1.7E-46 score: 157.8
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 103..262
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	PFAM	PF08263	LRRNT_2	coord: 104..143 e-value: 1.4E-9 score: 38.0
IPR001611	Leucine-rich repeat	PFAM	PF00560	LRR_1	coord: 195..217 e-value: 1.5 score: 9.4
None	No IPR available	PANTHER	PTHR27001:SF224	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	coord: 84..267
None	No IPR available	PANTHER	PTHR27001	FAMILY NOT NAMED	coord: 84..267
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 98..279
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..97
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 65..70
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..64
None	No IPR available	TMHMM	TMhelix		coord: 70..92
None	No IPR available	TMHMM	TMhelix		coord: 41..63

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097136 ID=g.barbadense_cottongen_reftransV1_0097136; Name=g.barbadense_cottongen_reftransV1_0097136; organism=Gossypium barbadense; type=contig; length=2172bp
GACTATTAAGATATTTTAACCTAAATTTAACCATATCCTTAAAGAATAAT
GGCAAATATTAATCAAAACAAAATATAGCAATATTATGGTGATAAATTTA
CATTTTAACCCTTTTATCTTTACTACATATACCCCAACCCATCTTTATAG
AATTTGCAGTTTCGCCCCTCTTTGAACAGTCTTCCCTAAGGCCTTAAGTC
CCTACTTCGATGTCCATTCAATAAGACATGAGTTTCAAGGTAAAGATATC
AATATATGTATATATTGATAGCATGACCAACTCTAACAACGATATTTCAT
GCTTGACATGTAAAAAAATCAAAAGGCTTAAAACCTAGCATCATGTTATT
TTATAGATTATATAGATACAGAGTAGAGCATCTCACTATCCACTCCTACA
TAAAAATCAGCATGGGGATGTCACCAGGGATTTTGCGCTCATGAGTTTGA
CAAACATTGGTTTCTTCAGCAGCCGAAGTTATAAGGCACGAGTCCTTTCA
GCTCTGGCCCATTCAAGCGCATGTTGCTTGCATAGCTGGAACACAGAGAG
CAATCGAAAATCATGACATCAAAACAAAACAAGCAACTGCACTTTTGCCT
ATTAACATTTTTTCTTTCACCATAACGTATTAGCTTAAATTTTTTGACTT
TGTGATAAAGGCGGTGCTACGGCCTCACATTCTGTTACAACTACTTGGAC
ACCATATCATGAACATTATTACACACATGCAGATAGCCTGTGTTTTAGGT
GAAGTCAGGTGTTAAGCATATTCCCATTACTTGAACTTAATATAATCAAA
ATAGTATTAGGCTTCTACTTTTGCAGCTAATTCCTTTCACTCCCAAGGCA
ATCATTCGAAAGCAATTCTCATAGTGCACTAATGTCCGATGCAAGCAGCA
GTTACATCTATGCAGGCATCACTAGTACATGTCCTAATGGATACACCTAG
CATTCATGCAAATAGATTAGAGGGCTCAGTTACTTCCATCTCATTCTCAT
GCTTCTTCTTCAAGCAATGAACACATACAACCACATCGACTTCTTACAAT
TTTTATATTTAAAAAAGGGCTTAAAAGCTTGTAAATCAACTGTGATGATC
AACAGAGAGAGCAATAAAAATGGTACCTTGGCATTGAGAACATCCCGAAA
GGGCCATCAACCGGGATAGTCCCGCAGAGATCATTATTAGAAACATCGAA
TACTTTAAGGTTAGAGAGGGCAGTAAGCTCCCGTGGAATGGATCCTGTCA
AGTTATTGTTGTTCAGACGAAGGAATCTCAGTGACTTCAGTCCGGAAAAA
GACTTGGGAATTTCTCCTTCGAACCGGTTACCATACAAATCCAAGCCAAC
AAGGTTCTTCAGATTCCCCAACTCCTTTGGAATTTCCCCACTTATGTCAT
TTTTGTACAGCTCGAAGTACTGGAGATGTTGGAGTTGAGCTAGCTCAGGA
CCCAAAGTTCCAGAGATATTAGAGTTCCCCAAGTCCAAGCGAATCACATG
ATTGTGGGAATCACAGGTGACATGAAACCAAGTACAGGGATTGACAAGCG
TAGGGTCCCAACTCTGCAACACATTGGTAGGGTCAGAAAGCCTCCTCCTT
AAAGCATGCAGAGCATTTCCTTCAGAGTTAGTTGAAATGGCAGGGGAAAG
AAGTGGAAGGAGAAAACAAAGGGACAAGGAAATCACAGCGAGAGGAGCCA
TTTGCAGATGGAGAGAAAGGATGAAGAAGAAAGAACCGAACTCAGAGAAG
AAAAAAAGGGTTAATAGGGAAGGAGAGAGATAGCAGATAGAAATGAAGGA
AGTAAAAAAGCGAGTCAAATGTGGTGGAAATGCATGAAGAAATAGAGTTT
TCTTTTTAAAAATTGAAGTTGGTTTGGAGCAGAAAGAAAGAAAGAAAGAG
AAATGGGAAAGTGGGGAGTGGTGGAAAAGGTCACACAATGGGCGTGTGTG
CCGCGTGGATTTGGTCCCCACTTTGGAGGCTGCTTCGCCTCAGTTCAGTT
GAGTTCTCAAGCCTACTCTCTCTGACTTTCTTCTTTCTTGGACTCTACTT
AACAGTGATGAAACTTGGAAGCTTCCTCCCTCTTCTCTTCCACCTTTACT
TATTCCAATACTTTTTCCTGTAATTACTACATAAACCTATTTTTTTCTTC
ATGATCTCGATTTCAATAAGGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR013210	LRR_N_plant-typ
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.barbadense_cottongen_reftransV1_0097136, g.barbadense_cottongen_reftransV1_0097136 (contig) Gossypium barbadense

Pages

Pages