g.barbadense_cottongen_reftransV1_0096985, g.barbadense_cottongen_reftransV1_0096985 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0096985
Unique Nameg.barbadense_cottongen_reftransV1_0096985
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2125
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At04chromosomeg.barbadense_cottongen_reftransV1_0096985:1..2099 .
At04:53364400..53375208 +		n/a
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TADA_STRP6 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.735e-10
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 3 
Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQG 1538
            CVI+KDGE+I  G N   E+  A  +AEM AI+           +  E         L+VT EPC+MC+ A+    I  V YG +N+KFGG  S+  +        ++D+      +   GL+A++  ++ ++F+ QG
Sbjct:   32 CVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA---------NAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI--------LTDERLNHRVQVERGLLAADCANIMQTFFRQG 152
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TADA_STRP3 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.735e-10
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 3 
Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQG 1538
            CVI+KDGE+I  G N   E+  A  +AEM AI+           +  E         L+VT EPC+MC+ A+    I  V YG +N+KFGG  S+  +        ++D+      +   GL+A++  ++ ++F+ QG
Sbjct:   32 CVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA---------NAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI--------LTDERLNHRVQVERGLLAADCANIMQTFFRQG 152
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TADA_STRP8 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=tadA PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.228e-10
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 3 
Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQG 1538
            CVI+KDGE+I  G N   E+  A  +AEM AI+           +  E         L+VT EPC+MC+ A+    I  V YG +N+KFGG  S+  +        ++D+      +   GL+A++  ++ ++F+ QG
Sbjct:   32 CVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA---------NAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI--------LTDERLNHRVQVERGLLAADCANIMQTFFRQG 152
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A0D3CP41_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.969e-56
Identity = 106/153 (69.28%), Postives = 133/153 (86.93%), Query Frame = 3 
Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQ-RGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQK 1580
            CVI +DG++IA GRNR  ETRNATR+AEMEAID L+  W++DGLS ++VA+ FS+C+LYVTCEPCI+CA+ALSFLGIK+VYYGCAN+KFGGCGS+LSLH   S+  IS+K  + +G+KC GG+MA EA+SLF+ FYEQGNPNAPKPHRP+VQ+
Sbjct:   37 CVITEDGKVIASGRNRRNETRNATRHAEMEAIDELVGPWRKDGLSPSQVAERFSKCVLYVTCEPCIICASALSFLGIKEVYYGCANDKFGGCGSVLSLHLVSSD--ISEKTQRGKGYKCRGGIMADEAVSLFKCFYEQGNPNAPKPHRPVVQR 187
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: R0GQ96_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009558mg PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 5.511e-56
Identity = 107/155 (69.03%), Postives = 133/155 (85.81%), Query Frame = 3 
Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQR--GFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKK 1583
            CVI++DG++IA GRNRT ETRNATR+AEMEAID L+  WQ++GLS ++VA+ FS+CILYVTCEPCIMCA+ALSF GIK+VYYGCAN+KFGGCGSILSLH    +P  + +  QR  G+KC GG+MA EA+SLF+ FYEQGNPNAPKPHRP++Q++
Sbjct:  200 CVILEDGKVIASGRNRTNETRNATRHAEMEAIDQLVGQWQKNGLSPSQVAEKFSKCILYVTCEPCIMCASALSFFGIKEVYYGCANDKFGGCGSILSLHVGSPQPSDTREEAQRGKGYKCRGGIMAEEAVSLFKCFYEQGNPNAPKPHRPVIQRE 354
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: I1MSL4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.522e-56
Identity = 106/159 (66.67%), Postives = 131/159 (82.39%), Query Frame = 3 
Query: 1104 PYLLSTSCVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQK 1580
            P +    CVI++D ++IA GRNRTT+TRNATR+AEMEA+D LL  WQ+ GLS +EVA+ FS C LYVTCEPCIMCA+ALS LGIK+V+YGC+N+KFGGCGSILSLH S + P  ++  P + FKCTG +MASEA+ LFR+FYEQGNPNAPKPHRPL ++
Sbjct:    3 PIVFVARCVIVEDDKVIASGRNRTTQTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTPLNNEVSPGKCFKCTGCIMASEAVLLFRTFYEQGNPNAPKPHRPLARQ 161
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: V4L791_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001035mg PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 9.200e-56
Identity = 105/155 (67.74%), Postives = 134/155 (86.45%), Query Frame = 3 
Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQR--GFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKK 1583
            CVI++DG++IA GRNRT ETRNATR+AEMEA+D L+  W+++GLS +++A+ FS+C+LYVTCEPCIMCA+ALSFLGIK+VYYGCAN+KFGGCGSILSLH   S+P    +  QR  G+KC GG+MA EA+SLF+ FYEQGNP+APKPHRP+VQ++
Sbjct:   37 CVILEDGKVIASGRNRTNETRNATRHAEMEAVDQLVGEWRKNGLSPSQIAEKFSKCVLYVTCEPCIMCASALSFLGIKEVYYGCANDKFGGCGSILSLHLGNSQPSDIPEEAQRGKGYKCKGGIMADEAVSLFKCFYEQGNPSAPKPHRPVVQRE 191
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A0B2QSL3_GLYSO (tRNA-specific adenosine deaminase 2 OS=Glycine soja GN=glysoja_027550 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.895e-55
Identity = 107/153 (69.93%), Postives = 130/153 (84.97%), Query Frame = 3 
Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKK 1583
            CVI++DG++IA GRNRTTETRNATR+AEMEAID LL  WQ+ GLS +EVA+ FS C LYVTCEPCIMCA+ALS LGIK+V+YGC+N+KFGGCGSILSLH S + P  ++    + FKCTG +MASEA+ LFR+FYEQGNPNAPKPHRPL +++
Sbjct:   30 CVIVEDGKVIASGRNRTTETRNATRHAEMEAIDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTAPLNNEVPSGKCFKCTGRIMASEAVLLFRTFYEQGNPNAPKPHRPLARQE 182
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 13
Match NameE-valueIdentityDescription
TADA_STRP61.735e-1031.88tRNA-specific adenosine deaminase OS=Streptococcus... [more]
TADA_STRP31.735e-1031.88tRNA-specific adenosine deaminase OS=Streptococcus... [more]
TADA_STRP82.228e-1031.88tRNA-specific adenosine deaminase OS=Streptococcus... [more]

Pages

back to top
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D3CP41_BRAOL4.969e-5669.28Uncharacterized protein OS=Brassica oleracea var. ... [more]
R0GQ96_9BRAS5.511e-5669.03Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
I1MSL4_SOYBN5.522e-5666.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
V4L791_EUTSA9.200e-5667.74Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A0B2QSL3_GLYSO1.895e-5569.93tRNA-specific adenosine deaminase 2 OS=Glycine soj... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.140.10coord: 2..126
e-value: 6.0E-35
score: 119.8
NoneNo IPR availablePANTHERPTHR11079CYTOSINE DEAMINASEcoord: 2..133
NoneNo IPR availablePANTHERPTHR11079:SF92TRNA-SPECIFIC ADENOSINE DEAMINASE 2coord: 2..133
IPR002125Cytidine and deoxycytidylate deaminases, zinc-bindingPFAMPF00383dCMP_cyt_deam_1coord: 2..72
e-value: 1.7E-10
score: 40.5
IPR002125Cytidine and deoxycytidylate deaminases, zinc-bindingPROSITEPS51747CYT_DCMP_DEAMINASES_2coord: 1..92
score: 17.273
IPR016193Cytidine deaminase-likeSUPERFAMILY53927Cytidine deaminase-likecoord: 2..130

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0096985 ID=g.barbadense_cottongen_reftransV1_0096985; Name=g.barbadense_cottongen_reftransV1_0096985; organism=Gossypium barbadense; type=contig; length=2125bp
ATGGAAAGTGATAATCTTGCATACATGGAACTTGCAATTCACCAGGCAAA
ACTTGCTTCGGAAAGCCTTGAAGTGCCTGTTGGGTAATTATTAACCTCAT
AAATTTCGTTTCTCCCTTAACCAACCTTCTCCATTTATTGGATGAAAATA
TGAATTTAGCTTCTCTTTTGTTACTAATGTAGATTGGCATTGCTTTGCAC
GACCTGGGAAAAAAAACTAAAAATGTTATATGAAGTACAACACGACACAA
ATACATAAAGATTCCAAAATCTATATAACAGAAATTATGAACTTATTAGG
TTGGTTATAACCTATATAATTAACATTATTAGGATTTAGAAACACTTGAA
AAAGTTTTGAGTTGAGGAATTGTACTGAATTTGGTGTTATGATTAATATG
TTTGGATGAAATCTGCTTGCAATGGTAGACATAAAGAAATATACTAAGGT
GAACAAAGAGCTGAAATACCCTAAAAGGTTTATGAGGACCTATTTATAGT
ACATTCCATAGGATTAAAAATGGAAATCTGTAATAACTTAAACAGATTCT
AAACAATGTAATTATTGCCTTCAAGGTTCACCTAATTTGAACATTTAAAT
TAAAAAGAAAAGAAGTAATGGCTTTTCCGACGGGTGCATTAGTTCTACCT
AGAAGATTGCAAAATTTAATGACACAAAGATTTGACCAATAAAAAGAACA
AGATATAAACTTAAGACTAAAATAAAATAGCATTGTCAAGCACATAATTA
TTTTTTTGGTCTCATGATTAATCTATAAATCAAAATATCACTAAGTTCTT
GGTCTTCATTGGTTGCACCATGTCATTGACTCGTGGGTTAAGTTTTATAT
TGTTGTGTGTTAAAGCATAAGCGATTGTTAACATTCTTGTAATTGATTAC
CAAGTTTTGAATCATGTAGCAATTCCTCTATTGCTACAACCAGAATTTTA
CGTTGCTGTAAACTTCATCAGATATCTGTTAACATAAATAGTTCCTCATT
ATCTTTGTCTGTGCTTTAACTTGGAGACTAAATTGTCTTCTTTTGCTCAA
GTCGATGACACATAGTCCAAGAGCAAAATTTCAATGCAATTTTTTTCTTT
TCACCATACCTTTTATCTACCAGTTGCGTAATCATCAAGGATGGGGAGCT
TATAGCCTTGGGTAGAAATCGAACCACTGAGACACGAAATGCAACAAGGT
ATGCAGAAATGGAAGCCATAGATAATCTTCTAGAGATGTGGCAGAGAGAT
GGACTTTCAAAAGCAGAAGTGGCTAAAAACTTTTCACAATGTATTTTGTA
TGTTACATGTGAACCATGCATAATGTGTGCTGCAGCTTTGTCATTTCTTG
GCATAAAAGATGTATATTATGGTTGTGCAAATGAGAAATTTGGAGGGTGC
GGATCAATTTTATCCTTGCATTCAAGTTGCTCAGAGCCTTTCATCAGTGA
TAAAGTTCCACAAAGAGGTTTCAAATGTACAGGGGGATTAATGGCCTCAG
AAGCAATCTCTCTTTTCCGAAGTTTCTATGAACAGGGGAATCCTAATGCT
CCAAAGCCTCATAGGCCTCTCGTTCAAAAGAAAGTTGAGTGATACATATA
GGTTGGTATATTCTTTTCTTAGTGATTTCAAAATACTTCTACTCTTGCCT
AGTTTCTTGAGTGATGTTCTTTGTTTCTAATTTCTTGTAAGGGTTTTGGT
GCTGTAAGGTGATTTAGGGCTGATCAAATGTTGGCGATAGAACTGCGAAG
AGAAAAGCAAATAGCAAGTCAAGGAAAAAGCTGGTTGGAGTTTGATAATG
GTAATGGCATTTTGTTCTAGTGTGCTGTTGCATGTCAGCGTCGGATTTGT
CAAAGCCACATTATAAGTCATATTTAACTGTGTTAGTGGTAGGTAGATCA
ACAGTTTGATGGTTTGATAGGATAGGTAGCTTGAGCATTCTTAAAGAACA
AGTATCATATTGATAATTTCGTTAATCTTCAGGGGCTACTTATAAAAATT
TTGTCAACTATTTTATAACAAATTTGGGCTTGAAGGGTTTCTATTAAGAT
TTTCTTCGGCGAGGTATTTTACTTGTGTATATGTACATATAATTCCAATG
TATCCTATTTCTAAGGCTTTGGTGC
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002125CMP_dCMP_dom
IPR016193Cytidine_deaminase-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003824catalytic activity