g.barbadense_cottongen_reftransV1_0096985, g.barbadense_cottongen_reftransV1_0096985 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0096985
Unique Name	g.barbadense_cottongen_reftransV1_0096985
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2125

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At04	chromosome	g.barbadense_cottongen_reftransV1_0096985:1..2099 . At04:53364400..53375208 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TADA_STRP6 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.735e-10
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQG 1538
            CVI+KDGE+I  G N   E+  A  +AEM AI+           +  E         L+VT EPC+MC+ A+    I  V YG +N+KFGG  S+  +        ++D+      +   GL+A++  ++ ++F+ QG
Sbjct:   32 CVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA---------NAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI--------LTDERLNHRVQVERGLLAADCANIMQTFFRQG 152

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TADA_STRP3 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.735e-10
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQG 1538
            CVI+KDGE+I  G N   E+  A  +AEM AI+           +  E         L+VT EPC+MC+ A+    I  V YG +N+KFGG  S+  +        ++D+      +   GL+A++  ++ ++F+ QG
Sbjct:   32 CVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA---------NAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI--------LTDERLNHRVQVERGLLAADCANIMQTFFRQG 152

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TADA_STRP8 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=tadA PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.228e-10
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQG 1538
            CVI+KDGE+I  G N   E+  A  +AEM AI+           +  E         L+VT EPC+MC+ A+    I  V YG +N+KFGG  S+  +        ++D+      +   GL+A++  ++ ++F+ QG
Sbjct:   32 CVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA---------NAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI--------LTDERLNHRVQVERGLLAADCANIMQTFFRQG 152

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A0D2V4B3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G114300 PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 5.577e-88
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 1589
            CVIIKDGE+IA GRNRTTETRNATR+AEMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIK+VYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE
Sbjct:   29 CVIIKDGEVIASGRNRTTETRNATRHAEMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKEVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 183

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A0D2V5A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G114300 PE=4 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 9.300e-81
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 3

Query: 1209 MEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 1589
            MEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIK+VYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE
Sbjct:    1 MEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKEVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 127

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A061GQA4_THECC (Cytidine/deoxycytidylate deaminase family protein isoform 4 (Fragment) OS=Theobroma cacao GN=TCM_039450 PE=4 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 5.068e-68
Identity = 132/180 (73.33%), Postives = 146/180 (81.11%), Query Frame = 3

Query: 1071 EQNFNAIFFFSPYL------LSTSCVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQR-GFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 1589
            +Q  N    F   L      +   CV IKDG++IA GRNRT ETRNATR+AEMEAID LLE WQRDGLSK++VA+ FS+CILYVTCEPCIMCAAALS LGIK+VYYGCANEKFGGCGSILSLHSS        +VPQR GFKCTGGL+ASEA+SLFRSFYEQGNPNAPKPHRPLVQK+VE
Sbjct:   34 QQTHNIFLIFQAKLALESLEVPVGCVFIKDGKVIASGRNRTNETRNATRHAEMEAIDILLEKWQRDGLSKSDVAETFSKCILYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHSSALSHL--SEVPQRKGFKCTGGLLASEAVSLFRSFYEQGNPNAPKPHRPLVQKEVE 211

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A061GS83_THECC (Cytidine/deoxycytidylate deaminase family protein isoform 1 OS=Theobroma cacao GN=TCM_039450 PE=4 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.703e-67
Identity = 128/156 (82.05%), Postives = 140/156 (89.74%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQR-GFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 1589
            CV IKDG++IA GRNRT ETRNATR+AEMEAID LLE WQRDGLSK++VA+ FS+CILYVTCEPCIMCAAALS LGIK+VYYGCANEKFGGCGSILSLHSS        +VPQR GFKCTGGL+ASEA+SLFRSFYEQGNPNAPKPHRPLVQK+VE
Sbjct:   49 CVFIKDGKVIASGRNRTNETRNATRHAEMEAIDILLEKWQRDGLSKSDVAETFSKCILYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHSSALSHL--SEVPQRKGFKCTGGLLASEAVSLFRSFYEQGNPNAPKPHRPLVQKEVE 202

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A067FEM3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029549mg PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.744e-61
Identity = 117/155 (75.48%), Postives = 139/155 (89.68%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFIS-DKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKV 1586
            CVI++DG++IA GRNRTTETRNATR+AEMEAID LL+ WQ++GLS++E+A+ FS+C LYVTCEPCIMCAAALS LGIK+VYYGCANEKFGGCGSILSLH S S+   S D + ++GFKCTGG+MASEA+SLFRSFYEQGNPNAPKPHRPLV + +
Sbjct:   36 CVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHRPLVHQAM 190

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: V4UJZ5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009594mg PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.744e-61
Identity = 117/155 (75.48%), Postives = 139/155 (89.68%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFIS-DKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKV 1586
            CVI++DG++IA GRNRTTETRNATR+AEMEAID LL+ WQ++GLS++E+A+ FS+C LYVTCEPCIMCAAALS LGIK+VYYGCANEKFGGCGSILSLH S S+   S D + ++GFKCTGG+MASEA+SLFRSFYEQGNPNAPKPHRPLV + +
Sbjct:   36 CVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKPHRPLVHQAM 190

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: W9S8D4_9ROSA (tRNA-specific adenosine deaminase 2 OS=Morus notabilis GN=L484_005638 PE=4 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.751e-61
Identity = 115/156 (73.72%), Postives = 134/156 (85.90%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQ-RGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKKVE 1589
            CVIIKDG++I+ GRNRTTE RNATR+AEMEAID LL+ WQ  GLSK E+A++FS+CILYVTCEPCIMCA ALS LGI +V+YGCANEKFGGCGSILSLH   SE   S  +PQ +GFKC GG+MASEAISLFR FYEQGNPNAPKPHRP+V+++ +
Sbjct:   36 CVIIKDGKVISSGRNRTTEARNATRHAEMEAIDMLLDKWQERGLSKYEIAEHFSKCILYVTCEPCIMCATALSILGISEVFYGCANEKFGGCGSILSLHLGNSESHNSGGIPQGKGFKCRGGIMASEAISLFRGFYEQGNPNAPKPHRPVVRQETQ 191

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A0A0LZX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G425900 PE=4 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 9.890e-60
Identity = 114/153 (74.51%), Postives = 128/153 (83.66%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKK 1583
            CVI++DG +IA GRNRTTETRNATR+AEMEAID L+E WQRDGLS +EVA  FS+C LYVTCEPCIMCA+ALS +GIK+VYYGCAN+KFGGCGSILSLH    E   S     RGFKCT G+MASEA+ LFRSFYEQGNPNAPKPHRPLV  +
Sbjct:   36 CVIVEDGMVIATGRNRTTETRNATRHAEMEAIDILIEAWQRDGLSTSEVADKFSKCKLYVTCEPCIMCASALSIIGIKEVYYGCANDKFGGCGSILSLHLGSGEAPTSGNGLGRGFKCTAGIMASEAVGLFRSFYEQGNPNAPKPHRPLVNHQ 188

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: M1C3V5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022976 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.236e-59
Identity = 111/153 (72.55%), Postives = 133/153 (86.93%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSE-PFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQK 1580
            CV ++DGE+IA GRNRTTETRNATR+AEMEAID L++ WQ++GLS  EV++ FS+CIL+VTCEPCIMCAAALS+LGIK+ YYGCAN+KFGGCGS+LSLH+S S  P       ++GFKCTGG+MASEA+SL RSFYEQGNPNAPKPHRPL Q+
Sbjct:   32 CVFVEDGEVIASGRNRTTETRNATRHAEMEAIDFLVQQWQKNGLSPLEVSERFSKCILFVTCEPCIMCAAALSYLGIKEAYYGCANDKFGGCGSVLSLHTSSSNLPTSELASSKKGFKCTGGIMASEAVSLLRSFYEQGNPNAPKPHRPLKQQ 184

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: K4CBY4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g008650.2 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.995e-59
Identity = 111/153 (72.55%), Postives = 132/153 (86.27%), Query Frame = 3

Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSE-PFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQK 1580
            CV ++DGE+IA GRNRTTETRNATR+AEMEAID L++ WQ++GLS  EV++ FS+C LYVTCEPCIMCAAALS+LGIK+ YYGCAN+KFGGCGS+LSLH+S S  P       ++GFKCTGG+MASEA+SL RSFYEQGNPNAPKPHRPL Q+
Sbjct:   59 CVFVEDGEVIASGRNRTTETRNATRHAEMEAIDFLVQQWQKNGLSPLEVSERFSKCTLYVTCEPCIMCAAALSYLGIKEAYYGCANDKFGGCGSVLSLHTSNSNLPTSELASSKKGFKCTGGIMASEAVSLLRSFYEQGNPNAPKPHRPLKQQ 211

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 13


Match Name	E-value	Identity	Description
TADA_STRP6	1.735e-10	31.88	tRNA-specific adenosine deaminase OS=Streptococcus...	[more]
TADA_STRP3	1.735e-10	31.88	tRNA-specific adenosine deaminase OS=Streptococcus...	[more]
TADA_STRP8	2.228e-10	31.88	tRNA-specific adenosine deaminase OS=Streptococcus...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2V4B3_GOSRA	5.577e-88	97.42	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2V5A2_GOSRA	9.300e-81	99.21	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GQA4_THECC	5.068e-68	73.33	Cytidine/deoxycytidylate deaminase family protein ...	[more]
A0A061GS83_THECC	1.703e-67	82.05	Cytidine/deoxycytidylate deaminase family protein ...	[more]
A0A067FEM3_CITSI	1.744e-61	75.48	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4UJZ5_9ROSI	1.744e-61	75.48	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
W9S8D4_9ROSA	9.751e-61	73.72	tRNA-specific adenosine deaminase 2 OS=Morus notab...	[more]
A0A0A0LZX4_CUCSA	9.890e-60	74.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
M1C3V5_SOLTU	4.236e-59	72.55	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
K4CBY4_SOLLC	7.995e-59	72.55	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.140.10		coord: 2..126 e-value: 6.0E-35 score: 119.8
None	No IPR available	PANTHER	PTHR11079	CYTOSINE DEAMINASE	coord: 2..133
None	No IPR available	PANTHER	PTHR11079:SF92	TRNA-SPECIFIC ADENOSINE DEAMINASE 2	coord: 2..133
IPR002125	Cytidine and deoxycytidylate deaminases, zinc-binding	PFAM	PF00383	dCMP_cyt_deam_1	coord: 2..72 e-value: 1.7E-10 score: 40.5
IPR002125	Cytidine and deoxycytidylate deaminases, zinc-binding	PROSITE	PS51747	CYT_DCMP_DEAMINASES_2	coord: 1..92 score: 17.273
IPR016193	Cytidine deaminase-like	SUPERFAMILY	53927	Cytidine deaminase-like	coord: 2..130

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0096985 ID=g.barbadense_cottongen_reftransV1_0096985; Name=g.barbadense_cottongen_reftransV1_0096985; organism=Gossypium barbadense; type=contig; length=2125bp
ATGGAAAGTGATAATCTTGCATACATGGAACTTGCAATTCACCAGGCAAA
ACTTGCTTCGGAAAGCCTTGAAGTGCCTGTTGGGTAATTATTAACCTCAT
AAATTTCGTTTCTCCCTTAACCAACCTTCTCCATTTATTGGATGAAAATA
TGAATTTAGCTTCTCTTTTGTTACTAATGTAGATTGGCATTGCTTTGCAC
GACCTGGGAAAAAAAACTAAAAATGTTATATGAAGTACAACACGACACAA
ATACATAAAGATTCCAAAATCTATATAACAGAAATTATGAACTTATTAGG
TTGGTTATAACCTATATAATTAACATTATTAGGATTTAGAAACACTTGAA
AAAGTTTTGAGTTGAGGAATTGTACTGAATTTGGTGTTATGATTAATATG
TTTGGATGAAATCTGCTTGCAATGGTAGACATAAAGAAATATACTAAGGT
GAACAAAGAGCTGAAATACCCTAAAAGGTTTATGAGGACCTATTTATAGT
ACATTCCATAGGATTAAAAATGGAAATCTGTAATAACTTAAACAGATTCT
AAACAATGTAATTATTGCCTTCAAGGTTCACCTAATTTGAACATTTAAAT
TAAAAAGAAAAGAAGTAATGGCTTTTCCGACGGGTGCATTAGTTCTACCT
AGAAGATTGCAAAATTTAATGACACAAAGATTTGACCAATAAAAAGAACA
AGATATAAACTTAAGACTAAAATAAAATAGCATTGTCAAGCACATAATTA
TTTTTTTGGTCTCATGATTAATCTATAAATCAAAATATCACTAAGTTCTT
GGTCTTCATTGGTTGCACCATGTCATTGACTCGTGGGTTAAGTTTTATAT
TGTTGTGTGTTAAAGCATAAGCGATTGTTAACATTCTTGTAATTGATTAC
CAAGTTTTGAATCATGTAGCAATTCCTCTATTGCTACAACCAGAATTTTA
CGTTGCTGTAAACTTCATCAGATATCTGTTAACATAAATAGTTCCTCATT
ATCTTTGTCTGTGCTTTAACTTGGAGACTAAATTGTCTTCTTTTGCTCAA
GTCGATGACACATAGTCCAAGAGCAAAATTTCAATGCAATTTTTTTCTTT
TCACCATACCTTTTATCTACCAGTTGCGTAATCATCAAGGATGGGGAGCT
TATAGCCTTGGGTAGAAATCGAACCACTGAGACACGAAATGCAACAAGGT
ATGCAGAAATGGAAGCCATAGATAATCTTCTAGAGATGTGGCAGAGAGAT
GGACTTTCAAAAGCAGAAGTGGCTAAAAACTTTTCACAATGTATTTTGTA
TGTTACATGTGAACCATGCATAATGTGTGCTGCAGCTTTGTCATTTCTTG
GCATAAAAGATGTATATTATGGTTGTGCAAATGAGAAATTTGGAGGGTGC
GGATCAATTTTATCCTTGCATTCAAGTTGCTCAGAGCCTTTCATCAGTGA
TAAAGTTCCACAAAGAGGTTTCAAATGTACAGGGGGATTAATGGCCTCAG
AAGCAATCTCTCTTTTCCGAAGTTTCTATGAACAGGGGAATCCTAATGCT
CCAAAGCCTCATAGGCCTCTCGTTCAAAAGAAAGTTGAGTGATACATATA
GGTTGGTATATTCTTTTCTTAGTGATTTCAAAATACTTCTACTCTTGCCT
AGTTTCTTGAGTGATGTTCTTTGTTTCTAATTTCTTGTAAGGGTTTTGGT
GCTGTAAGGTGATTTAGGGCTGATCAAATGTTGGCGATAGAACTGCGAAG
AGAAAAGCAAATAGCAAGTCAAGGAAAAAGCTGGTTGGAGTTTGATAATG
GTAATGGCATTTTGTTCTAGTGTGCTGTTGCATGTCAGCGTCGGATTTGT
CAAAGCCACATTATAAGTCATATTTAACTGTGTTAGTGGTAGGTAGATCA
ACAGTTTGATGGTTTGATAGGATAGGTAGCTTGAGCATTCTTAAAGAACA
AGTATCATATTGATAATTTCGTTAATCTTCAGGGGCTACTTATAAAAATT
TTGTCAACTATTTTATAACAAATTTGGGCTTGAAGGGTTTCTATTAAGAT
TTTCTTCGGCGAGGTATTTTACTTGTGTATATGTACATATAATTCCAATG
TATCCTATTTCTAAGGCTTTGGTGC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002125	CMP_dCMP_dom
IPR016193	Cytidine_deaminase-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003824	catalytic activity

Search form

g.barbadense_cottongen_reftransV1_0096985, g.barbadense_cottongen_reftransV1_0096985 (contig) Gossypium barbadense

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