g.barbadense_cottongen_reftransV1_0096985, g.barbadense_cottongen_reftransV1_0096985 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: ADAT2_BOVIN (tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.467e-28 Identity = 70/146 (47.95%), Postives = 95/146 (65.07%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRG--FKCTGGLMASEAISLFRSFYEQGNPNAPK 1556 C+++ + E++ GRN +T+NATR+AEM AID L+ +R G S +EV F +LYVT EPCIMCAAAL + I V YGC NE+FGGCGS+L + S+ +P G F+CT G A EA+ + ++FY+Q NPNAPK Sbjct: 46 CLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQALDWCRRRGRSPSEV---FEHTVLYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGSVLDIASA--------DLPSTGKPFQCTPGYRAEEAVEMLKTFYKQENPNAPK 180
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: ADAT2_DANRE (tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 2.797e-27 Identity = 72/151 (47.68%), Postives = 96/151 (63.58%), Query Frame = 3 Query: 1113 LSTSCVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRG--FKCTGGLMASEAISLFRSFYEQGNPNAPKP 1559 + C+++ + E+I GRN ET+NATR+AEM A+D +L+ W R L + + + Q +LYVT EPCIMCAAAL L I V YGC NE+FGGCGS+L + SD +P G FKC G A EA+ + ++FY+Q NPNAPKP Sbjct: 41 VPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQVLD-WCR--LREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSVLDVS--------SDHLPHTGTSFKCIAGYRAEEAVEMLKTFYKQENPNAPKP 180
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: ADAT2_HUMAN (tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.049e-27 Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQ--RGFKCTGGLMASEAISLFRSFYEQGNPNAPK 1556 C+++ + E++ GRN +T+NATR+AEM AID +L+ ++ G S +EV F +LYVT EPCIMCAAAL + I V YGC NE+FGGCGS+L++ S+ +P R F+C G A EA+ + ++FY+Q NPNAPK Sbjct: 46 CLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASA--------DLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNAPK 180
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: ADAT2_MOUSE (tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 8.353e-27 Identity = 68/150 (45.33%), Postives = 95/150 (63.33%), Query Frame = 3 Query: 1113 LSTSCVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQ--RGFKCTGGLMASEAISLFRSFYEQGNPNAPK 1556 + C+++ + E++ GRN +T+NATR+AEM AID +L+ + G S + V F +LYVT EPCIMCAAAL + I V YGC NE+FGGCGS+L++ S+ +P R F+C G A EA+ L ++FY+Q NPNAPK Sbjct: 42 VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCHQHGQSPSTV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASA--------DLPNTGRPFQCIPGYRAEEAVELLKTFYKQENPNAPK 180
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: ADAT2_XENTR (tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.409e-25 Identity = 70/155 (45.16%), Postives = 96/155 (61.94%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRG--FKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKK 1583 C+++ D +++ GRN ET+NATR+AEM AID +L+ +++ +V F +LYVT EPCIMCA AL L I V YGC NE+FGGCGS+L++ D +P G FK GG A +A+ L ++FY+Q NPNAP R V+KK Sbjct: 29 CLMVYDNQVVGKGRNEVNETKNATRHAEMVAIDQVLDWCEKNSKKSRDV---FENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNV--------AGDNIPDTGTEFKYIGGYQAEKAVELLKTFYKQENPNAP---RSKVRKK 169
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: ADAT2_XENLA (tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.485e-25 Identity = 67/146 (45.89%), Postives = 91/146 (62.33%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRG--FKCTGGLMASEAISLFRSFYEQGNPNAPK 1556 C+++ +++ GRN ET+NAT++AEM AID +L+ + + +V F +LYVT EPCIMCA AL L I V YGC NE+FGGCGS+L++ D +P G FKC GG A +AI L ++FY+Q NPNAPK Sbjct: 34 CLMVYGNQVVGKGRNEVNETKNATQHAEMVAIDQVLDWCEMNSKKSTDV---FENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVS--------GDDIPDTGTKFKCIGGYQAEKAIELLKTFYKQENPNAPK 168
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TAD2_SCHPO (tRNA-specific adenosine deaminase subunit tad2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tad2 PE=3 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 3.473e-20 Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 3 Query: 1122 SCVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPH 1562 SCV + GE+I G N T + + R+AE+ AI+ +LE + A F + LYVT EPC+MCAAAL L IK VY+GC N++FGGCGS+ S++ D+ + GL SEA+ L R FY Q N AP P Sbjct: 240 SCVFVYKGEVIGRGFNETNCSLSGIRHAELIAIEKILEHYP---------ASVFKETTLYVTVEPCLMCAAALKQLHIKAVYFGCGNDRFGGCGSVFSIN--------KDQSIDPSYPVYPGLFYSEAVMLMREFYVQENVKAPVPQ 369
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TAD2_YEAST (tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 6.845e-18 Identity = 55/140 (39.29%), Postives = 76/140 (54.29%), Query Frame = 3 Query: 1143 GELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSL-HSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKP 1559 G+++A G N T ++ +AE ID + M G V F LYVT EPCIMCA+AL L I V +GC NE+FGG G++LS+ H +C+ + G++ G++ EAI L R FY + N APKP Sbjct: 35 GQVMAYGMNDTNKSLTGVAHAEFMGIDQIKAMLGSRG-----VVDVFKDITLYVTVEPCIMCASALKQLDIGKVVFGCGNERFGGNGTVLSVNHDTCT--LVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNERAPKP 167
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TADA_STRP1 (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M1 GN=tadA PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.689e-10 Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQG 1538 CVI+KDGE+I G N E+ A +AEM AI+ + E L+VT EPC+MC+ A+ I V YG +N+KFGG S+ + ++D+ + GL+A++ ++ ++F+ QG Sbjct: 32 CVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA---------NAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQI--------LTDERLNHRVQVERGLLAADCANIMQTFFRQG 152
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Match: TADA_STRPQ (tRNA-specific adenosine deaminase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.735e-10 Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQG 1538 CVI+KDGE+I G N E+ A +AEM AI+ + E L+VT EPC+MC+ A+ I V YG +N+KFGG S+ + ++D+ + GL+A++ ++ ++F+ QG Sbjct: 32 CVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEA---------NAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI--------LTDERLNHRVQVERGLLAADCANIMQTFFRQG 152
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A0D3CP41_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 4.969e-56 Identity = 106/153 (69.28%), Postives = 133/153 (86.93%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQ-RGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQK 1580 CVI +DG++IA GRNR ETRNATR+AEMEAID L+ W++DGLS ++VA+ FS+C+LYVTCEPCI+CA+ALSFLGIK+VYYGCAN+KFGGCGS+LSLH S+ IS+K + +G+KC GG+MA EA+SLF+ FYEQGNPNAPKPHRP+VQ+ Sbjct: 37 CVITEDGKVIASGRNRRNETRNATRHAEMEAIDELVGPWRKDGLSPSQVAERFSKCVLYVTCEPCIICASALSFLGIKEVYYGCANDKFGGCGSVLSLHLVSSD--ISEKTQRGKGYKCRGGIMADEAVSLFKCFYEQGNPNAPKPHRPVVQR 187
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: R0GQ96_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009558mg PE=4 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 5.511e-56 Identity = 107/155 (69.03%), Postives = 133/155 (85.81%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQR--GFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKK 1583 CVI++DG++IA GRNRT ETRNATR+AEMEAID L+ WQ++GLS ++VA+ FS+CILYVTCEPCIMCA+ALSF GIK+VYYGCAN+KFGGCGSILSLH +P + + QR G+KC GG+MA EA+SLF+ FYEQGNPNAPKPHRP++Q++ Sbjct: 200 CVILEDGKVIASGRNRTNETRNATRHAEMEAIDQLVGQWQKNGLSPSQVAEKFSKCILYVTCEPCIMCASALSFFGIKEVYYGCANDKFGGCGSILSLHVGSPQPSDTREEAQRGKGYKCRGGIMAEEAVSLFKCFYEQGNPNAPKPHRPVIQRE 354
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: I1MSL4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 5.522e-56 Identity = 106/159 (66.67%), Postives = 131/159 (82.39%), Query Frame = 3 Query: 1104 PYLLSTSCVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQK 1580 P + CVI++D ++IA GRNRTT+TRNATR+AEMEA+D LL WQ+ GLS +EVA+ FS C LYVTCEPCIMCA+ALS LGIK+V+YGC+N+KFGGCGSILSLH S + P ++ P + FKCTG +MASEA+ LFR+FYEQGNPNAPKPHRPL ++ Sbjct: 3 PIVFVARCVIVEDDKVIASGRNRTTQTRNATRHAEMEAVDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTTPLNNEVSPGKCFKCTGCIMASEAVLLFRTFYEQGNPNAPKPHRPLARQ 161
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: V4L791_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10001035mg PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 9.200e-56 Identity = 105/155 (67.74%), Postives = 134/155 (86.45%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQR--GFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKK 1583 CVI++DG++IA GRNRT ETRNATR+AEMEA+D L+ W+++GLS +++A+ FS+C+LYVTCEPCIMCA+ALSFLGIK+VYYGCAN+KFGGCGSILSLH S+P + QR G+KC GG+MA EA+SLF+ FYEQGNP+APKPHRP+VQ++ Sbjct: 37 CVILEDGKVIASGRNRTNETRNATRHAEMEAVDQLVGEWRKNGLSPSQIAEKFSKCVLYVTCEPCIMCASALSFLGIKEVYYGCANDKFGGCGSILSLHLGNSQPSDIPEEAQRGKGYKCKGGIMADEAVSLFKCFYEQGNPSAPKPHRPVVQRE 191
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Match: A0A0B2QSL3_GLYSO (tRNA-specific adenosine deaminase 2 OS=Glycine soja GN=glysoja_027550 PE=4 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.895e-55 Identity = 107/153 (69.93%), Postives = 130/153 (84.97%), Query Frame = 3 Query: 1125 CVIIKDGELIALGXXXXXXXXXXXXXXXMEAIDNLLEMWQRDGLSKAEVAKNFSQCILYVTCEPCIMCAAALSFLGIKDVYYGCANEKFGGCGSILSLHSSCSEPFISDKVPQRGFKCTGGLMASEAISLFRSFYEQGNPNAPKPHRPLVQKK 1583 CVI++DG++IA GRNRTTETRNATR+AEMEAID LL WQ+ GLS +EVA+ FS C LYVTCEPCIMCA+ALS LGIK+V+YGC+N+KFGGCGSILSLH S + P ++ + FKCTG +MASEA+ LFR+FYEQGNPNAPKPHRPL +++ Sbjct: 30 CVIVEDGKVIASGRNRTTETRNATRHAEMEAIDVLLGQWQKHGLSMSEVAEKFSNCSLYVTCEPCIMCASALSILGIKEVFYGCSNDKFGGCGSILSLHLSNTAPLNNEVPSGKCFKCTGRIMASEAVLLFRTFYEQGNPNAPKPHRPLARQE 182 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 13
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BLAST of g.barbadense_cottongen_reftransV1_0096985 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0096985 ID=g.barbadense_cottongen_reftransV1_0096985; Name=g.barbadense_cottongen_reftransV1_0096985; organism=Gossypium barbadense; type=contig; length=2125bpback to top |