g.barbadense_cottongen_reftransV1_0096984, g.barbadense_cottongen_reftransV1_0096984 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0096984
Unique Nameg.barbadense_cottongen_reftransV1_0096984
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt10chromosomeg.barbadense_cottongen_reftransV1_0096984:11..2158 .
Dt10:1034177..1038849 -
Homology
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: A0A0B2RA73_GLYSO (Ankyrin repeat-containing protein OS=Glycine soja GN=glysoja_040515 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 6.759e-77
Identity = 201/571 (35.20%), Postives = 302/571 (52.89%), Query Frame = -2
Query:  512 KEIIISKPDMNRFDEMSEPYKKVLAKDDDVHCLKAIYSKNTDALLNPITALKDTIFHIAAHDGREEVLRVLLEMVPPSKSAEVLKVKNIYGNTILHEVATTTNVKAARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIGRTGNLESHY-RRNDGTSILHIAVIGQQFDTAIWFLRKSPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPS------DSRNKEGTN---ELTKNRQDRD------------------LEQG---EQNRGLNQQDYCKGWKMIVQIWKQKKMHESAVKLAKLLVETDASWFETHEPEEDDTILMERQXX----XXETSKSNATANTERSPEPD-TPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVFHVLKDKEEAKRLVRGIDNDGCTILHHAANTKYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGGFLQNGHSPRRASLLVF 2116
            K++ +++  +   ++M +PY  +LAK  +       ++K+ D L   I     T  H AAH G   + R ++E V       VL++++  GNT LHEVA T  V+  + ++E         N+Q E +L  +NKLGET ++RAA      ++ +    +G   + + H+ R+ D  SILH AVI Q F TA+W L +   LA  K+ N  T+L LLA M S FKS +   G  K FIY  LP+       ++NKE T    +L   R+D++                  L+ G    +N     Q     WK I ++W++K+MH  A +L  LL + D SW  T     D T+ M R ++    +E   K       E + +P  TPLL+A   GI EIV+ I+  +P ++ H+    QNIL++A+ HRQ K++ +LK  +  + L   ID +  T+LH+ A    + GG++P  AL+LQ+EL WF+ ++ ++P H+ +H N+   TA  LF + H  LL  A+EW K T+QSCS VA+LVATVVF AAYT PGG   NG  PR     +F
Sbjct:   15 KKLEMTRHSVALIEKMKKPY--ILAKRYEWEEFGRFFNKHKDLLDKQIDLHHSTPLHYAAHCGNPTMYREMIEWVGEGDIKRVLRLQDDMGNTPLHEVAFTGEVEMTKSILEH--EEEEGPNQQYEPLLRMRNKLGETAVYRAAALGKTDLLSFFLQDLGADAHRDIHFHRKGDKMSILHTAVIDQFFGTALWILERYEHLAYEKEDNELTTLQLLAKMPSTFKSQTQM-GPLKNFIYLLLPNFQDYKYYNQNKEYTTKKEDLESGREDKNEPSPTQMKLEDNTREGQILKSGGKARRNEPPTTQRKLSEWKEIDKLWRKKEMHNLAKELVNLLAQKDYSWRNT-AIARDRTVSMGRSQQEGKPKEIKGKQEEGEKQEGASKPTYTPLLMAACNGITEIVEVIIHFHPHSIEHVSDDEQNILYMAVKHRQKKIYQILKKLKMVRSLAGKIDKESNTVLHYTAE---FQGGSQPGFALQLQEELHWFDRIEKRLPYHYTIHKNQYNKTAKQLFVEKHEALLNDAREWIKETAQSCSAVAVLVATVVFAAAYTVPGGTDDNGF-PRFLHETIF 575          

HSP 2 Score: 49.6766 bits (117), Expect = 6.759e-77
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = -3
Query:  400 LEEPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPR 537
            L E ++  FT+MD+  L SSL SV++FLSILTS  E  DF   LPR
Sbjct:  570 LHETIFMVFTIMDIVALVSSLGSVIMFLSILTSPCEMWDFRKSLPR 615          
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: V7ALZ2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G033100g PE=4 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 3.525e-76
Identity = 180/537 (33.52%), Postives = 268/537 (49.91%), Query Frame = -2
Query:  545 DEMSEPYKKVLAKDDDVHCLKAIYSKNTDALLNPITALKDTIFHIAAHDGREEVLRVLLEMVPPSKSAEVLKVKNIYGNTILHEVATTTNVKA---ARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIGRTGNLESHYR-RNDGTSILHIAVIGQQFDTAIWFLRKSPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPSDSRNKEGTNELTKNRQDRDLEQGEQNR------GLNQQDYCKGWKMIV-------QIWKQKKMHESAVKLAKLLVETDASWFETHEPEEDDTILME---------RQXXXXETSKSNATANTERSPEPDTPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVFHVLKDKEEAKRLVRGIDNDGCTILHHAANTKYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGGFLQNG 2077
            +EM E  K  + K  +    K I  +  + +L       +T  H+A      ++L   +EMVP  +    L  KN+ GNT+LHE+  + + +         EE L+ P     Q+  +L  +N  GE+PLF AA +    +++Y+A    R  NL  H+R  +D  + LH +VIGQ F  AIW  R    L+  KD    T L LL+ M   F+S     G  K  IY+ LP +  N E +    K    +D E G+++        +++ +Y + WK +        Q WK+KK H+ A  LA  LV  D SW +  + + + TIL+          +++      +      TE  PE  T L +ATK GIVEIV + L  +P A+YH+ +K  NIL + + +RQ K+  +++     + LV  I +   T+LH  A   YY        A  LQ EL W++ V+   P H+ MH +    T +D+ +  H  +LK A++W K T+QSCSTVAILVATVVF AAYT PGG  +NG
Sbjct:   23 EEMKEAQKAAMKKQWEE--FKKIMMEKPENILKQFDLFGNTAIHVATR-SHTQLLSEFIEMVPAEERWNALCKKNVEGNTVLHEIVFSKHAQEMADVVFRFEEQLLTP-----QKNPLLELRNNEGESPLFVAAMHGKLKILKYMA---NRVQNLGEHFRLSDDKYNALHASVIGQHFHVAIWLERMDENLSLEKDGKDLTCLQLLSKMPQVFRSCIHM-GPLKNTIYHLLPDEYDNDEHSQLFKK----KDEENGKEDEPTLFKSAISEINY-RFWKHLAKEFEGIDQTWKEKKKHKLAEHLASTLVTNDLSW-QASKNKYNRTILITMPHDPINVVKRKRVSVRKREERRKKTEERPE-RTALFLATKNGIVEIVNKFLQVHPAAIYHVTEKQHNILTMVVKYRQRKILKLIERTGTIESLVAQITDKRRTVLHEVARMHYYKAEHLAGVAFHLQDELRWYDRVRRFTPKHYNMHCDIDGHTPEDMLEIEHDGMLKEAKKWLKETAQSCSTVAILVATVVFAAAYTIPGG-TENG 539          

HSP 2 Score: 82.0333 bits (201), Expect = 3.525e-76
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  226 TVILLEEPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPRNXXXXXXXXXXXXXXXXXXXTATILLLVHLE-KKWTATLTYAAAFLPICLFALFQFPLY 549
            T + +   ++ FFT+MDV  LA+SL SVVIFLSILTS  +  DFH  LPR L+LGF  LFFS+ +TM  F+AT+LL + LE KKW  TL Y+A F P  +FA+ QFP+Y
Sbjct:  540 TPVFIHSSVFLFFTIMDVVALATSLASVVIFLSILTSPCDLWDFHKSLPRKLNLGFVLLFFSLLTTMFAFSATMLLTIRLEWKKW--TLIYSATFFPATIFAIIQFPVY 646          
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: B9HZF0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01120g PE=4 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 8.643e-76
Identity = 185/498 (37.15%), Postives = 258/498 (51.81%), Query Frame = -2
Query:  536 TDALLNPITALKDTIFHIAAHDGREEVL--RVLLEMVPPSKSAEVLKVKNIYGNTILHEVATTTNVKAARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIG--RTGNLESHYRRNDGTSILHIAVIGQQFDTAIWFLRKSPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPSDSRNKEGTNELTKNRQDRDLEQGEQNRGLNQQDYCKGWKMIVQIWKQKKMHESAVKLAKLLVETDASWFETHEPEEDDTILMERQXXXXETSKSNATANTERSPE-----PDTPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVFHVLKDKE-EAKRLVRGIDNDGCTILHHAA-NTKYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGGFLQNGHSP 1996
            +D  L+ IT   DT+ H+A +  +E  L  R+L E+  P    + L  +N  GNTILHE AT+   K A  + ++LL       ++   +LG +N  GET LFRAA+Y    M  +LA  +       L+ + +R+D T+ILHIA++ + FD A         L + KD +G TSL LL+   SAFK   P  G  K                                     L +   C  W+  VQ   QK  ++SAV+LAKLL  TD SW  T+   +     + R  E       +  A   R PE      +TPL++ATK+GIVEIV+EIL  YPQAV H+  +G+N+LHVAI +R+ K+F ++   E   KRLVR IDN+G +ILH      K +       PA  LQ+EL WFE V+   P HFI H N +  +A+ LF   + +L  +A+EW K+T++  S VA+L+ATV F AAYT PGG  Q+   P
Sbjct:   39 SDHALHVITVNDDTVLHMATY-AKEAALAERLLDEL--PDHHVDKLTRQNRVGNTILHETATS---KHALAVADKLL-------KRAPGLLGMRNHNGETALFRAARYGKTDMFNFLAAKVSGYDEAGLQFYVQRSDKTTILHIAILSEHFDLAYQIALDYRHLISEKDGDGMTSLQLLSCNQSAFKQE-PEDGFIK-------------------------------------LAKSCCCTAWQQKVQ--NQKYKYKSAVELAKLLSRTDTSWEVTYSSIDQSKPKIHRYGEIGGQEGMSLAA---RIPERMDDVGETPLILATKSGIVEIVEEILRLYPQAVEHVDDEGRNVLHVAIKYRELKIFELVTKMEVPMKRLVRKIDNEGNSILHTVGIKRKDFVSEKIEGPAFLLQEELLWFERVEKVTPPHFISHHNSQNLSAEGLFITANSELRSSAKEWMKSTAEGSSVVAVLIATVAFAAAYTVPGGPNQSTGVP 480          

HSP 2 Score: 76.2554 bits (186), Expect = 8.643e-76
Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = -3
Query:  166 ILLEEPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPRNXXXXXXXXXXXXXXXXXXXTATILLLVHLEKKWTATLTYAAAFLPICLFALFQFPLYYQYFVAAVKSILDFLRRNLP 543
            +L+ +P +  FTV DV  L  +LTSVV FLSIL+S   F+DF H LP  L  GFTFLF SV   M+ F +TI L ++ ++ W     Y  +F+P+C+FAL  FPLY     +++     +L  N P
Sbjct:  481 VLVNKPFFVVFTVSDVLSLTFALTSVVTFLSILSSPFRFKDFKHTLPNKLMAGFTFLFLSVAMMMVAFGSTIFLTIYNKENWAKVTLYTVSFIPVCIFALSYFPLY-----SSLSKTYKYLLENFP 601          
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: W9R9C3_9ROSA (Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_014141 PE=4 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.350e-74
Identity = 201/601 (33.44%), Postives = 294/601 (48.92%), Query Frame = -2
Query:  542 MNRFDEMSEPYKKVLAKDDDVHCLKAIYSKNTDALLNPITALKDTIFHIAAHDGREEVLRVLL-EMVPPSKSAEV------------LKVKNIYGNTILHEVATTTNVKAARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIGRTGNLESHYRRNDGTSILHIAVIGQQFDTAIWFLRK--SPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPS-DSRNKEGTNELTKNRQDRDLEQGEQNR------GLNQQD----------------------------------------------YCKGWK-----MIVQIWKQKKMHESAVKLAKLLVETDASWF----------ETHEP-EEDDTILMERQXXXXETSKSNATANTERSPEPDTPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVFHVLKDKE-EAKRLVRGIDNDGCTILHHAANTKYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGGFLQNGH 2089
            M     M+EPY   L KD   + LK  Y  + + +   +T   DT  HIA H G  +++R LL +++   K  E             L+ KN YG+T LHE A+  +++  +               + EE+L  +N  GETPLFRAA +    +V +LA+   R  ++ +H RR+D TSILHIAV+G+ F+TA+  LR   SP+     D+NG T   LLA+M SAF+S   + G     +YYCLP  D    +       +   +DLE G+ +       GL Q+D                                               C  W+      I ++W  KK     ++L  +L + D SW           + H P  E D      +++EE+   S + A +E S   +TPL+ A + GI+EIV+ IL  YPQA+ H+ Q+ +NI HVA  +R+ ++  +L+       RL R I+ DG +ILH AA    Y    +P  AL++Q E+ WF+ V+  +PS+FI H NK E TA  LF   HRDL++  QEW   T+Q+C+ VA+L+ATV FT AYT PGG  + GH
Sbjct:    1 MGSVARMTEPYGAALNKD--WNALKNFYELHKEFVTASLTVTGDTALHIAVHSGNTQLVRSLLNQILGDDKGNESPLFHSFIEELAPLRRKNEYGDTALHEAASRGHLEIVK-----------LLLDRDEELLKVKNNRGETPLFRAAAFGQTKVVRFLAS---RVDDMRTHRRRDDSTSILHIAVLGRYFETAVELLRHDISPDSI---DENGMTCFQLLANMPSAFRSGY-SMGKLASLLYYCLPEKDYDEDDDIVPQHASSGKKDLESGQGSSQGNIPTGLPQKDDQKLDDIVPQPASSKEEDLESGHGRKPLQGYSQVNQPTDDHLIFFALCHDWQSKVLPAIGKLWDIKKKQSKVLELLNILAKQDLSWIGGNFGGAPDEKIHLPVHEKDDAEEADKDDEEDAGSSRSHAASETSFRFETPLIAAARNGIMEIVEAILKVYPQAIEHVNQRNENIFHVAARYRRAEILELLQSSHIPISRLRRKINADGDSILHKAAYLGEYSLRDRPGEALRMQSEIQWFKRVQKIVPSYFINHRNKDEHTAQFLFSKQHRDLVRRGQEWLMRTTQACTLVAVLIATVAFTCAYTVPGGSSKTGH 581          

HSP 2 Score: 53.9138 bits (128), Expect = 2.350e-74
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = -3
Query:  226 FTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPRNXXXXXXXXXXXXXXXXXXXTATILLLVHLEKKWTATLTYAAAFLPICLFALFQFPLY 513
            FT  D   L  SLTSVV+FLSI+TS ++ +DF   LP  L LG T LFF+V + M+ F AT++L++     W A   Y  A  P+ +F + Q PLY
Sbjct:  593 FTTADTLSLCFSLTSVVVFLSIMTSKMQEQDFRRSLPLKLVLGLTTLFFAVAAMMVAFAATLVLMMRKRLHWAAIPIYTIACCPVTIFLVLQLPLY 688          
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: F6I2F9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1321g00010 PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.620e-74
Identity = 184/508 (36.22%), Postives = 269/508 (52.95%), Query Frame = -2
Query:  560 LNPITALKDTIFHIAAHDGREEVLRVLLEMVPPSKSAEVLKVKNIYGNTILHEVATTTNVKAARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIGRTG-----NLESHYRRNDGTSILHIAVIGQQFDTAIWFLRKSPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPSDSRNKEGTNELTKNRQDRDLEQGEQNRGLNQQDYCKGWKMIVQIWKQKKMHESAVKLAKLLVETDASWFETHEPEEDD---TILMERQXXXXETSKSNATANT------------ERSPE-----------PDTPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVF-HVLKDKEEAKRLVRGIDNDGCTILHHAANT-KYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGG 1984
            L+ IT  KDT+ H+A +  + ++   LL+++PPS +      KN   NTILHEVAT     A   +  E+L      NR   E+L A+N LGETPLFRA +Y    M + LA  + R       + ++  RRNDGT+ILHI+V  + FD A+    +  +L +  D N  T+L  LA   SAF S     G  + FIY C+ + +R              +DL+   ++R          W +   + ++K  +++A +LA  L+E+D SW E   P+  D     + E+  +   +SK  A  +             + SPE            +TPL +AT +GI EIV EIL +YPQA+ H   +G+NILHVAI +RQ ++F  V+K +  A+RL+R  D  G +ILH      K Y      +PA++LQ+EL  FE VK    SHF+   N    TAD+LF  N+ +L + A+EW K T+++C+ VA+L+ATV F AAYT PGG
Sbjct:   34 LHKITIHKDTVLHMACYSKQCDLALELLQLLPPSLNQRFANSKNDVDNTILHEVAT---YNAMTDVATEIL------NRA-PELLTARNILGETPLFRAVRYGKDEMFKLLAEKLDRMDFETEEDRKACLRRNDGTTILHISVFTENFDLALLIAERYGDLISAWDSNQMTALQHLACNPSAFLSGC-EHGHLRRFIYSCISNKARGGRC----------QDLKSVAKSRF--------RWPIWEALLEEKHRYDAARELASKLLESDTSW-EATNPQAVDRGSISVQEKGGDSSVSSKEKAKVDPSIALQHPDEKKGKTSPEVNRTRFNNIRNKETPLFLATMSGIPEIVDEILKKYPQAIEHYNDQGRNILHVAINYRQIEIFDRVVKMEMPARRLLRATDAKGNSILHMVGKKGKRYVSRKSRSPAIQLQEELLLFERVKEYSKSHFLKVFNHNNQTADELFASNYCELHEEAKEWLKRTAENCTIVAVLIATVAFAAAYTIPGG 511          

HSP 2 Score: 77.7962 bits (190), Expect = 3.620e-74
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = -3
Query:  208 ILLEEPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPRNXXXXXXXXXXXXXXXXXXXTATILLLVHLEKKWTATLTYAAAFLPICLFALFQFPLYYQYFVA 543
            +LL +P +  FT+ DV  L  +LTSV+ FLSILTS  + +DF   L R L LGFTFL  SV+  M+ F ATI+L++H +++WT  + Y+ AFLP+ +FAL   PLYY+   A
Sbjct:  520 LLLSQPFFVVFTLADVISLTYALTSVITFLSILTSPFQLQDFKKSLLRKLMLGFTFLILSVSMMMVAFAATIILMIHNKERWTKIVLYSVAFLPVIIFALSYSPLYYRLLKA 631          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2RA73_GLYSO6.759e-7735.20Ankyrin repeat-containing protein OS=Glycine soja ... [more]
V7ALZ2_PHAVU3.525e-7633.52Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
B9HZF0_POPTR8.643e-7637.15Uncharacterized protein OS=Populus trichocarpa GN=... [more]
W9R9C3_9ROSA2.350e-7433.44Ankyrin repeat-containing protein OS=Morus notabil... [more]
F6I2F9_VITVI3.620e-7436.22Putative uncharacterized protein OS=Vitis vinifera... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 175..204
e-value: 250.0
score: 9.5
coord: 419..454
e-value: 4600.0
score: 0.1
coord: 137..169
e-value: 600.0
score: 6.6
coord: 92..121
e-value: 430.0
score: 7.8
coord: 349..379
e-value: 3700.0
score: 0.8
coord: 383..412
e-value: 290.0
score: 9.0
coord: 53..83
e-value: 13.0
score: 14.7
IPR026961PGG domainPFAMPF13962PGGcoord: 491..527
e-value: 2.1E-9
score: 37.1
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 329..431
e-value: 1.3E-9
score: 36.8
coord: 145..219
e-value: 1.9E-10
score: 39.5
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 26..144
e-value: 1.8E-11
score: 43.2
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 53..218
score: 15.406
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 349..428
score: 9.914
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 27..253
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 348..432
NoneNo IPR availablePFAMPF13637Ank_4coord: 56..112
e-value: 1.3E-7
score: 31.9
NoneNo IPR availablePANTHERPTHR24177:SF19SUBFAMILY NOT NAMEDcoord: 279..301
NoneNo IPR availablePANTHERPTHR24177:SF19SUBFAMILY NOT NAMEDcoord: 1..220
coord: 349..521
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 1..220
coord: 349..521
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 279..301
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 503..523
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 524..647
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..502

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0096984 ID=g.barbadense_cottongen_reftransV1_0096984; Name=g.barbadense_cottongen_reftransV1_0096984; organism=Gossypium barbadense; type=contig; length=2162bp
ATCCAATAGTCCAAGAACAATGACCAAAACAGGAATATAGGAATAAGAAA
AAAAAACAGTAAAAATCTAGAAATCAATGGACTTTGAGCAGCAATACAGA
TTAAAAGGCTTCCCTTTTATTGCTTCTTAGTAATCATCTATAAATTGAAG
AAAATCCCAGTTACCAGGCAAATTCCTTCTAAGAAAATCCAAAATGCTCT
TCACTGCAGCAACGAAGTACTGGTAATATAAAGGGAATTGAAATAATGCA
AATAAGCATATGGGAAGGAATGCAGCCGCATACGTTAGCGTTGCAGTCCA
CTTCTTCTCCAAATGAACCAGCAGTAAAATGGTGGCTGTGAAAGTCATCA
TGGTGCTGGTGACGGAGAAGAATAGGAAGGTGAAACCGAGGGAGAGGTTC
CGAGGTAACCGGTGATGAAAATCCTCGAACTCGAGTGAAGAAGTGAGGAT
AGAGAGGAAGATAACCACCGAGGTCAAGGAACTCGCGAGACCGGCAACGT
CCATCACCGTGAAAAACGAGTAAAGAGGCTCTTCGAGGAGAATGACCGTT
CTGCAAGAAACCACCCGGTGCAGTGTAGGCAGCTGTGAAAACAACAGTTG
CGACGAGAATGGCGACCGTCGAACACGACTGAGAGGTGTTCTTCGCCCAT
TCTTGCGCGGTTTTAAGTAGATCTCGGTGATTATCCTTGAAAAGGTCATC
TGCTGTGGTCTCCTTTTTGTTGAGATGCATGATAAAATGAGAGGGCATTT
GGTTTTTTACGTCCTCAAACCATGTCAATTCCTGTTGGAGTTTAAGAGCA
GGGGTTGGTTTGGTTCCTCCATGATAATATTTAGTGTTAGCAGCATGGTG
CAGTATGGTGCAACCATCGTTATCGATGCCCCGAACCAACCTCTTCGCCT
CTTCTTTATCCTTAAGGACATGGAACACTTTGTATTGCCGATGCATGATA
GCGACATGAAGTATGTTTTGCCCCTTTTGACCGATGTGATAAACTGCCTG
AGGGTACCTTGTGAGTATCTCCTTCACTATCTCCACGATGCCTGTTTTGG
TTGCGATGAGCAATGGCGTATCCGGTTCAGGCGACCGCTCTGTGTTGGCC
GTTGCATTACTTTTTGACGTCTCTTCTTCTTCCTCCTGCCGTTCCATTAA
AATCGTGTCGTCTTCCTCCGGTTCATGAGTTTCGAACCAAGACGCATCAG
TTTCCACTAATAACTTCGCTAGTTTAACCGCCGATTCATGCATTTTCTTT
TGTTTCCAAATCTGAACAATCATTTTCCATCCTTTGCAGTAATCCTGCTG
ATTGAGACCTCTGTTTTGTTCACCCTGCTCTAAATCTCTGTCTTGCCTAT
TTTTTGTAAGCTCATTCGTCCCTTCCTTATTACGTGAATCACTCGGTAGG
CAATAATAGATGAACTCCTTGAATATTCCTTTGGTGGGGGAGCTGCTCTT
AAAAGCGGAGGCCATGCTAGCTAGCAGATGAAGACTGGTGTTTCCATTCT
TGTCCTTGTATGTTGCAAGCTCTGGAGACTTTCTCAGAAACCAAATAGCA
GTATCGAACTGTTGGCCGATCACAGCAATATGAAGAATGGAGGTCCCATC
GTTTCTCCTATAGTGACTTTCAAGGTTCCCGGTTCGTCCGATTGCAGTTG
CCAAATACTCCACCATCGTTTTGCAGCTATATTGCGCAGCCCTGAACAAT
GGGGTTTCGCCTAATTTGTTTTGAGCACCCAATATCTCTTCCCTTTGCCG
ATTATCATTTCCAGGCAACACCAACAACTCTTCCATCAATAAACGAGCTG
CTTTTACATTAGTAGTGGTGGCCACCTCATGGAGGATCGTGTTCCCGTAA
ATGTTCTTCACCTTCAGCACCTCTGCACTCTTTGACGGCGGCACCATTTC
GAGCAGAACACGAAGCACTTCCTCACGGCCGTCGTGAGCTGCGATGTGGA
AGATGGTGTCTTTAAGTGCCGTGATTGGATTCAACAATGCGTCGGTGTTT
TTCGAGTAGATCGCTTTCAAGCAATGAACGTCATCGTCTTTGGCTAAAAC
TTTTTTGTATGGTTCGCTCATTTCATCGAAACGGTTCATATCTGGTTTGG
ATATGATTATTTCTTTTTCCATGGATTATTGAAATTCTCTCTTTGAATGT
GTGTTTTAGATC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR026961PGG_dom
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding