g.barbadense_cottongen_reftransV1_0096984, g.barbadense_cottongen_reftransV1_0096984 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: A0A0B2RA73_GLYSO (Ankyrin repeat-containing protein OS=Glycine soja GN=glysoja_040515 PE=4 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 6.759e-77 Identity = 201/571 (35.20%), Postives = 302/571 (52.89%), Query Frame = -2 Query: 512 KEIIISKPDMNRFDEMSEPYKKVLAKDDDVHCLKAIYSKNTDALLNPITALKDTIFHIAAHDGREEVLRVLLEMVPPSKSAEVLKVKNIYGNTILHEVATTTNVKAARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIGRTGNLESHY-RRNDGTSILHIAVIGQQFDTAIWFLRKSPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPS------DSRNKEGTN---ELTKNRQDRD------------------LEQG---EQNRGLNQQDYCKGWKMIVQIWKQKKMHESAVKLAKLLVETDASWFETHEPEEDDTILMERQXX----XXETSKSNATANTERSPEPD-TPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVFHVLKDKEEAKRLVRGIDNDGCTILHHAANTKYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGGFLQNGHSPRRASLLVF 2116 K++ +++ + ++M +PY +LAK + ++K+ D L I T H AAH G + R ++E V VL++++ GNT LHEVA T V+ + ++E N+Q E +L +NKLGET ++RAA ++ + +G + + H+ R+ D SILH AVI Q F TA+W L + LA K+ N T+L LLA M S FKS + G K FIY LP+ ++NKE T +L R+D++ L+ G +N Q WK I ++W++K+MH A +L LL + D SW T D T+ M R ++ +E K E + +P TPLL+A GI EIV+ I+ +P ++ H+ QNIL++A+ HRQ K++ +LK + + L ID + T+LH+ A + GG++P AL+LQ+EL WF+ ++ ++P H+ +H N+ TA LF + H LL A+EW K T+QSCS VA+LVATVVF AAYT PGG NG PR +F Sbjct: 15 KKLEMTRHSVALIEKMKKPY--ILAKRYEWEEFGRFFNKHKDLLDKQIDLHHSTPLHYAAHCGNPTMYREMIEWVGEGDIKRVLRLQDDMGNTPLHEVAFTGEVEMTKSILEH--EEEEGPNQQYEPLLRMRNKLGETAVYRAAALGKTDLLSFFLQDLGADAHRDIHFHRKGDKMSILHTAVIDQFFGTALWILERYEHLAYEKEDNELTTLQLLAKMPSTFKSQTQM-GPLKNFIYLLLPNFQDYKYYNQNKEYTTKKEDLESGREDKNEPSPTQMKLEDNTREGQILKSGGKARRNEPPTTQRKLSEWKEIDKLWRKKEMHNLAKELVNLLAQKDYSWRNT-AIARDRTVSMGRSQQEGKPKEIKGKQEEGEKQEGASKPTYTPLLMAACNGITEIVEVIIHFHPHSIEHVSDDEQNILYMAVKHRQKKIYQILKKLKMVRSLAGKIDKESNTVLHYTAE---FQGGSQPGFALQLQEELHWFDRIEKRLPYHYTIHKNQYNKTAKQLFVEKHEALLNDAREWIKETAQSCSAVAVLVATVVFAAAYTVPGGTDDNGF-PRFLHETIF 575 HSP 2 Score: 49.6766 bits (117), Expect = 6.759e-77 Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = -3 Query: 400 LEEPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPR 537 L E ++ FT+MD+ L SSL SV++FLSILTS E DF LPR Sbjct: 570 LHETIFMVFTIMDIVALVSSLGSVIMFLSILTSPCEMWDFRKSLPR 615
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: V7ALZ2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G033100g PE=4 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 3.525e-76 Identity = 180/537 (33.52%), Postives = 268/537 (49.91%), Query Frame = -2 Query: 545 DEMSEPYKKVLAKDDDVHCLKAIYSKNTDALLNPITALKDTIFHIAAHDGREEVLRVLLEMVPPSKSAEVLKVKNIYGNTILHEVATTTNVKA---ARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIGRTGNLESHYR-RNDGTSILHIAVIGQQFDTAIWFLRKSPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPSDSRNKEGTNELTKNRQDRDLEQGEQNR------GLNQQDYCKGWKMIV-------QIWKQKKMHESAVKLAKLLVETDASWFETHEPEEDDTILME---------RQXXXXETSKSNATANTERSPEPDTPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVFHVLKDKEEAKRLVRGIDNDGCTILHHAANTKYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGGFLQNG 2077 +EM E K + K + K I + + +L +T H+A ++L +EMVP + L KN+ GNT+LHE+ + + + EE L+ P Q+ +L +N GE+PLF AA + +++Y+A R NL H+R +D + LH +VIGQ F AIW R L+ KD T L LL+ M F+S G K IY+ LP + N E + K +D E G+++ +++ +Y + WK + Q WK+KK H+ A LA LV D SW + + + + TIL+ +++ + TE PE T L +ATK GIVEIV + L +P A+YH+ +K NIL + + +RQ K+ +++ + LV I + T+LH A YY A LQ EL W++ V+ P H+ MH + T +D+ + H +LK A++W K T+QSCSTVAILVATVVF AAYT PGG +NG Sbjct: 23 EEMKEAQKAAMKKQWEE--FKKIMMEKPENILKQFDLFGNTAIHVATR-SHTQLLSEFIEMVPAEERWNALCKKNVEGNTVLHEIVFSKHAQEMADVVFRFEEQLLTP-----QKNPLLELRNNEGESPLFVAAMHGKLKILKYMA---NRVQNLGEHFRLSDDKYNALHASVIGQHFHVAIWLERMDENLSLEKDGKDLTCLQLLSKMPQVFRSCIHM-GPLKNTIYHLLPDEYDNDEHSQLFKK----KDEENGKEDEPTLFKSAISEINY-RFWKHLAKEFEGIDQTWKEKKKHKLAEHLASTLVTNDLSW-QASKNKYNRTILITMPHDPINVVKRKRVSVRKREERRKKTEERPE-RTALFLATKNGIVEIVNKFLQVHPAAIYHVTEKQHNILTMVVKYRQRKILKLIERTGTIESLVAQITDKRRTVLHEVARMHYYKAEHLAGVAFHLQDELRWYDRVRRFTPKHYNMHCDIDGHTPEDMLEIEHDGMLKEAKKWLKETAQSCSTVAILVATVVFAAAYTIPGG-TENG 539 HSP 2 Score: 82.0333 bits (201), Expect = 3.525e-76 Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = -3 Query: 226 TVILLEEPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPRNXXXXXXXXXXXXXXXXXXXTATILLLVHLE-KKWTATLTYAAAFLPICLFALFQFPLY 549 T + + ++ FFT+MDV LA+SL SVVIFLSILTS + DFH LPR L+LGF LFFS+ +TM F+AT+LL + LE KKW TL Y+A F P +FA+ QFP+Y Sbjct: 540 TPVFIHSSVFLFFTIMDVVALATSLASVVIFLSILTSPCDLWDFHKSLPRKLNLGFVLLFFSLLTTMFAFSATMLLTIRLEWKKW--TLIYSATFFPATIFAIIQFPVY 646
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: B9HZF0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01120g PE=4 SV=2) HSP 1 Score: 238.039 bits (606), Expect = 8.643e-76 Identity = 185/498 (37.15%), Postives = 258/498 (51.81%), Query Frame = -2 Query: 536 TDALLNPITALKDTIFHIAAHDGREEVL--RVLLEMVPPSKSAEVLKVKNIYGNTILHEVATTTNVKAARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIG--RTGNLESHYRRNDGTSILHIAVIGQQFDTAIWFLRKSPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPSDSRNKEGTNELTKNRQDRDLEQGEQNRGLNQQDYCKGWKMIVQIWKQKKMHESAVKLAKLLVETDASWFETHEPEEDDTILMERQXXXXETSKSNATANTERSPE-----PDTPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVFHVLKDKE-EAKRLVRGIDNDGCTILHHAA-NTKYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGGFLQNGHSP 1996 +D L+ IT DT+ H+A + +E L R+L E+ P + L +N GNTILHE AT+ K A + ++LL ++ +LG +N GET LFRAA+Y M +LA + L+ + +R+D T+ILHIA++ + FD A L + KD +G TSL LL+ SAFK P G K L + C W+ VQ QK ++SAV+LAKLL TD SW T+ + + R E + A R PE +TPL++ATK+GIVEIV+EIL YPQAV H+ +G+N+LHVAI +R+ K+F ++ E KRLVR IDN+G +ILH K + PA LQ+EL WFE V+ P HFI H N + +A+ LF + +L +A+EW K+T++ S VA+L+ATV F AAYT PGG Q+ P Sbjct: 39 SDHALHVITVNDDTVLHMATY-AKEAALAERLLDEL--PDHHVDKLTRQNRVGNTILHETATS---KHALAVADKLL-------KRAPGLLGMRNHNGETALFRAARYGKTDMFNFLAAKVSGYDEAGLQFYVQRSDKTTILHIAILSEHFDLAYQIALDYRHLISEKDGDGMTSLQLLSCNQSAFKQE-PEDGFIK-------------------------------------LAKSCCCTAWQQKVQ--NQKYKYKSAVELAKLLSRTDTSWEVTYSSIDQSKPKIHRYGEIGGQEGMSLAA---RIPERMDDVGETPLILATKSGIVEIVEEILRLYPQAVEHVDDEGRNVLHVAIKYRELKIFELVTKMEVPMKRLVRKIDNEGNSILHTVGIKRKDFVSEKIEGPAFLLQEELLWFERVEKVTPPHFISHHNSQNLSAEGLFITANSELRSSAKEWMKSTAEGSSVVAVLIATVAFAAAYTVPGGPNQSTGVP 480 HSP 2 Score: 76.2554 bits (186), Expect = 8.643e-76 Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = -3 Query: 166 ILLEEPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPRNXXXXXXXXXXXXXXXXXXXTATILLLVHLEKKWTATLTYAAAFLPICLFALFQFPLYYQYFVAAVKSILDFLRRNLP 543 +L+ +P + FTV DV L +LTSVV FLSIL+S F+DF H LP L GFTFLF SV M+ F +TI L ++ ++ W Y +F+P+C+FAL FPLY +++ +L N P Sbjct: 481 VLVNKPFFVVFTVSDVLSLTFALTSVVTFLSILSSPFRFKDFKHTLPNKLMAGFTFLFLSVAMMMVAFGSTIFLTIYNKENWAKVTLYTVSFIPVCIFALSYFPLY-----SSLSKTYKYLLENFP 601
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: W9R9C3_9ROSA (Ankyrin repeat-containing protein OS=Morus notabilis GN=L484_014141 PE=4 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.350e-74 Identity = 201/601 (33.44%), Postives = 294/601 (48.92%), Query Frame = -2 Query: 542 MNRFDEMSEPYKKVLAKDDDVHCLKAIYSKNTDALLNPITALKDTIFHIAAHDGREEVLRVLL-EMVPPSKSAEV------------LKVKNIYGNTILHEVATTTNVKAARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIGRTGNLESHYRRNDGTSILHIAVIGQQFDTAIWFLRK--SPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPS-DSRNKEGTNELTKNRQDRDLEQGEQNR------GLNQQD----------------------------------------------YCKGWK-----MIVQIWKQKKMHESAVKLAKLLVETDASWF----------ETHEP-EEDDTILMERQXXXXETSKSNATANTERSPEPDTPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVFHVLKDKE-EAKRLVRGIDNDGCTILHHAANTKYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGGFLQNGH 2089 M M+EPY L KD + LK Y + + + +T DT HIA H G +++R LL +++ K E L+ KN YG+T LHE A+ +++ + + EE+L +N GETPLFRAA + +V +LA+ R ++ +H RR+D TSILHIAV+G+ F+TA+ LR SP+ D+NG T LLA+M SAF+S + G +YYCLP D + + +DLE G+ + GL Q+D C W+ I ++W KK ++L +L + D SW + H P E D +++EE+ S + A +E S +TPL+ A + GI+EIV+ IL YPQA+ H+ Q+ +NI HVA +R+ ++ +L+ RL R I+ DG +ILH AA Y +P AL++Q E+ WF+ V+ +PS+FI H NK E TA LF HRDL++ QEW T+Q+C+ VA+L+ATV FT AYT PGG + GH Sbjct: 1 MGSVARMTEPYGAALNKD--WNALKNFYELHKEFVTASLTVTGDTALHIAVHSGNTQLVRSLLNQILGDDKGNESPLFHSFIEELAPLRRKNEYGDTALHEAASRGHLEIVK-----------LLLDRDEELLKVKNNRGETPLFRAAAFGQTKVVRFLAS---RVDDMRTHRRRDDSTSILHIAVLGRYFETAVELLRHDISPDSI---DENGMTCFQLLANMPSAFRSGY-SMGKLASLLYYCLPEKDYDEDDDIVPQHASSGKKDLESGQGSSQGNIPTGLPQKDDQKLDDIVPQPASSKEEDLESGHGRKPLQGYSQVNQPTDDHLIFFALCHDWQSKVLPAIGKLWDIKKKQSKVLELLNILAKQDLSWIGGNFGGAPDEKIHLPVHEKDDAEEADKDDEEDAGSSRSHAASETSFRFETPLIAAARNGIMEIVEAILKVYPQAIEHVNQRNENIFHVAARYRRAEILELLQSSHIPISRLRRKINADGDSILHKAAYLGEYSLRDRPGEALRMQSEIQWFKRVQKIVPSYFINHRNKDEHTAQFLFSKQHRDLVRRGQEWLMRTTQACTLVAVLIATVAFTCAYTVPGGSSKTGH 581 HSP 2 Score: 53.9138 bits (128), Expect = 2.350e-74 Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = -3 Query: 226 FTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPRNXXXXXXXXXXXXXXXXXXXTATILLLVHLEKKWTATLTYAAAFLPICLFALFQFPLY 513 FT D L SLTSVV+FLSI+TS ++ +DF LP L LG T LFF+V + M+ F AT++L++ W A Y A P+ +F + Q PLY Sbjct: 593 FTTADTLSLCFSLTSVVVFLSIMTSKMQEQDFRRSLPLKLVLGLTTLFFAVAAMMVAFAATLVLMMRKRLHWAAIPIYTIACCPVTIFLVLQLPLY 688
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Match: F6I2F9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1321g00010 PE=4 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 3.620e-74 Identity = 184/508 (36.22%), Postives = 269/508 (52.95%), Query Frame = -2 Query: 560 LNPITALKDTIFHIAAHDGREEVLRVLLEMVPPSKSAEVLKVKNIYGNTILHEVATTTNVKAARLLMEELLVLPGNDNRQREEILGAQNKLGETPLFRAAQYSCKTMVEYLATAIGRTG-----NLESHYRRNDGTSILHIAVIGQQFDTAIWFLRKSPELATYKDKNGNTSLHLLASMASAFKSSSPTKGIFKEFIYYCLPSDSRNKEGTNELTKNRQDRDLEQGEQNRGLNQQDYCKGWKMIVQIWKQKKMHESAVKLAKLLVETDASWFETHEPEEDD---TILMERQXXXXETSKSNATANT------------ERSPE-----------PDTPLLIATKTGIVEIVKEILTRYPQAVYHIGQKGQNILHVAIMHRQYKVF-HVLKDKEEAKRLVRGIDNDGCTILHHAANT-KYYHGGTKPTPALKLQQELTWFEDVKNQMPSHFIMHLNKKETTADDLFKDNHRDLLKTAQEWAKNTSQSCSTVAILXXXXXXXXXXXAPGG 1984 L+ IT KDT+ H+A + + ++ LL+++PPS + KN NTILHEVAT A + E+L NR E+L A+N LGETPLFRA +Y M + LA + R + ++ RRNDGT+ILHI+V + FD A+ + +L + D N T+L LA SAF S G + FIY C+ + +R +DL+ ++R W + + ++K +++A +LA L+E+D SW E P+ D + E+ + +SK A + + SPE +TPL +AT +GI EIV EIL +YPQA+ H +G+NILHVAI +RQ ++F V+K + A+RL+R D G +ILH K Y +PA++LQ+EL FE VK SHF+ N TAD+LF N+ +L + A+EW K T+++C+ VA+L+ATV F AAYT PGG Sbjct: 34 LHKITIHKDTVLHMACYSKQCDLALELLQLLPPSLNQRFANSKNDVDNTILHEVAT---YNAMTDVATEIL------NRA-PELLTARNILGETPLFRAVRYGKDEMFKLLAEKLDRMDFETEEDRKACLRRNDGTTILHISVFTENFDLALLIAERYGDLISAWDSNQMTALQHLACNPSAFLSGC-EHGHLRRFIYSCISNKARGGRC----------QDLKSVAKSRF--------RWPIWEALLEEKHRYDAARELASKLLESDTSW-EATNPQAVDRGSISVQEKGGDSSVSSKEKAKVDPSIALQHPDEKKGKTSPEVNRTRFNNIRNKETPLFLATMSGIPEIVDEILKKYPQAIEHYNDQGRNILHVAINYRQIEIFDRVVKMEMPARRLLRATDAKGNSILHMVGKKGKRYVSRKSRSPAIQLQEELLLFERVKEYSKSHFLKVFNHNNQTADELFASNYCELHEEAKEWLKRTAENCTIVAVLIATVAFAAAYTIPGG 511 HSP 2 Score: 77.7962 bits (190), Expect = 3.620e-74 Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = -3 Query: 208 ILLEEPLYSFFTVMDVAGLASSLTSVVIFLSILTSSLEFEDFHHRLPRNXXXXXXXXXXXXXXXXXXXTATILLLVHLEKKWTATLTYAAAFLPICLFALFQFPLYYQYFVA 543 +LL +P + FT+ DV L +LTSV+ FLSILTS + +DF L R L LGFTFL SV+ M+ F ATI+L++H +++WT + Y+ AFLP+ +FAL PLYY+ A Sbjct: 520 LLLSQPFFVVFTLADVISLTYALTSVITFLSILTSPFQLQDFKKSLLRKLMLGFTFLILSVSMMMVAFAATIILMIHNKERWTKIVLYSVAFLPVIIFALSYSPLYYRLLKA 631 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0096984 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0096984 ID=g.barbadense_cottongen_reftransV1_0096984; Name=g.barbadense_cottongen_reftransV1_0096984; organism=Gossypium barbadense; type=contig; length=2162bpback to top |