g.barbadense_cottongen_reftransV1_0096983, g.barbadense_cottongen_reftransV1_0096983 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0096983
Unique Nameg.barbadense_cottongen_reftransV1_0096983
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1996
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Dt05chromosomeg.barbadense_cottongen_reftransV1_0096983:1..1996 .
Dt05:1575934..1578511 +		n/a
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A078CIN2_BRANA (BnaC08g33360D protein OS=Brassica napus GN=BnaC08g33360D PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.187e-40
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = -3 
Query: 1530 FLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1784
            F  +R +HSRNKKAME +AKGWSA+KEVDRVIDYCELND+RLIPLLR AKENFELALEADN NTHAR+WLSKLHLKYHVPGACKA
Sbjct:   24 FDQRRGIHSRNKKAMEYVAKGWSAIKEVDRVIDYCELNDRRLIPLLRGAKENFELALEADNLNTHARFWLSKLHLKYHVPGACKA 108

HSP 2 Score: 138.658 bits (348), Expect = 4.364e-33
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +ND+VQSDQQAF+Y+E AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  136 ENDHVQSDQQAFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDMDSAVWCFHRASEKGHAGAAIAYGSLLLRG 208

HSP 3 Score: 62.3882 bits (150), Expect = 2.132e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = -2 
Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            G QVPE LT+ ++      KR  +N+D    NP+E+AKEQF++AA AGCDL LKW
Sbjct:  208 GVQVPESLTRMNAVGVPPPKRCRENMDM---NPLELAKEQFQVAARAGCDLGLKW 259
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A0D3DVF7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.187e-40
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = -3 
Query: 1530 FLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1784
            F  +R +HSRNKKAME +AKGWSA+KEVDRVIDYCELND+RLIPLLR AKENFELALEADN NTHAR+WLSKLHLKYHVPGACKA
Sbjct:   24 FDQRRGIHSRNKKAMEYVAKGWSAIKEVDRVIDYCELNDRRLIPLLRGAKENFELALEADNLNTHARFWLSKLHLKYHVPGACKA 108

HSP 2 Score: 138.658 bits (348), Expect = 4.364e-33
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +ND+VQSDQQAF+Y+E AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  136 ENDHVQSDQQAFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDMDSAVWCFHRASEKGHAGAAIAYGSLLLRG 208

HSP 3 Score: 62.3882 bits (150), Expect = 2.132e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = -2 
Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            G QVPE LT+ ++      KR  +N+D    NP+E+AKEQF++AA AGCDL LKW
Sbjct:  208 GVQVPESLTRMNAVGVPPPKRCRENMDM---NPLELAKEQFQVAARAGCDLGLKW 259
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A078FF28_BRANA (BnaA09g40850D protein OS=Brassica napus GN=BnaA09g40850D PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.139e-39
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = -3 
Query: 1530 KREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1775
            +R +HSRNKKAME +AKGWSA+KEVDRVIDYCELND+RLIPLLR AKENFELALEADN NTHAR+WLSKLHLKYHVPGACKA
Sbjct:   29 RRGIHSRNKKAMEYVAKGWSAIKEVDRVIDYCELNDRRLIPLLRGAKENFELALEADNLNTHARFWLSKLHLKYHVPGACKA 110

HSP 2 Score: 138.658 bits (348), Expect = 4.005e-33
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +ND+VQSDQQAF+Y+E AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  138 ENDHVQSDQQAFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDMDSAVWCFHRASEKGHAGAAIAYGSLLLRG 210

HSP 3 Score: 63.5438 bits (153), Expect = 1.001e-7
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = -2 
Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            G QVPE LT+ ++      KR+ +N+D    NP+E+AKEQF++AA AGCDL LKW
Sbjct:  210 GVQVPESLTRMNAVGVPPPKRSRENMDM---NPLELAKEQFQVAARAGCDLGLKW 261
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: M4CU94_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra007788 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.139e-39
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = -3 
Query: 1530 KREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1775
            +R +HSRNKKAME +AKGWSA+KEVDRVIDYCELND+RLIPLLR AKENFELALEADN NTHAR+WLSKLHLKYHVPGACKA
Sbjct:   29 RRGIHSRNKKAMEYVAKGWSAIKEVDRVIDYCELNDRRLIPLLRGAKENFELALEADNLNTHARFWLSKLHLKYHVPGACKA 110

HSP 2 Score: 138.658 bits (348), Expect = 4.005e-33
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +ND+VQSDQQAF+Y+E AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  138 ENDHVQSDQQAFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDMDSAVWCFHRASEKGHAGAAIAYGSLLLRG 210

HSP 3 Score: 63.5438 bits (153), Expect = 1.001e-7
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = -2 
Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            G QVPE LT+ ++      KR+ +N+D    NP+E+AKEQF++AA AGCDL LKW
Sbjct:  210 GVQVPESLTRMNAVGVPPPKRSRENMDM---NPLELAKEQFQVAARAGCDLGLKW 261
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Match: A0A087GRR0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA6G259200 PE=4 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.145e-39
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = -3 
Query: 1530 FLLKREMHSRNKKAMELIAKGWSALKEVDRVIDYCELNDKRLIPLLRAAKENFELALEADNSNTHARYWLSKLHLKYHVPGACKA 1784
             L +R +H+RNKKAME +AKGWSA+KEVDRVIDYCELND+RLIPLLR AKENFELALEADN NTHAR+WLSKLHLKYHVPGACKA
Sbjct:   18 LLQRRGIHNRNKKAMEYVAKGWSAIKEVDRVIDYCELNDRRLIPLLRGAKENFELALEADNLNTHARFWLSKLHLKYHVPGACKA 102

HSP 2 Score: 139.813 bits (351), Expect = 1.326e-33
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = -2 
Query:  799 QNDYVQSDQQAFYYLEKAVDQLHPGALYLLGAVYLTGDCVKKDISSALWCFHRASEKGHAGAAIAYGSLLLRG 1017
            +ND+VQSDQQAF+Y+E AVDQLHPGALYLLG VYLTGDCVK+D+ SA+WCFHRASEKGHAGAAIAYGSLLLRG
Sbjct:  130 ENDHVQSDQQAFHYIENAVDQLHPGALYLLGIVYLTGDCVKQDVDSAIWCFHRASEKGHAGAAIAYGSLLLRG 202

HSP 3 Score: 69.707 bits (169), Expect = 7.144e-10
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -2 
Query:  427 GAQVPECLTKFSSKRGSAAKRTTKNVDHRAGNPVEMAKEQFRIAATAGCDLALKW 591
            GA+VPE LTK S+   S  K++ KN +    NP+EMAKEQF+IAA AGCDL LKW
Sbjct:  202 GAKVPESLTKLSTVVVSPPKKSRKNPEDLEINPLEMAKEQFQIAARAGCDLGLKW 256
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0096983 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078CIN2_BRANA9.187e-4085.88BnaC08g33360D protein OS=Brassica napus GN=BnaC08g... [more]
A0A0D3DVF7_BRAOL9.187e-4085.88Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A078FF28_BRANA1.139e-3987.80BnaA09g40850D protein OS=Brassica napus GN=BnaA09g... [more]
M4CU94_BRARP1.139e-3987.80Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A087GRR0_ARAAL1.145e-3984.71Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..123
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.67
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0096983 ID=g.barbadense_cottongen_reftransV1_0096983; Name=g.barbadense_cottongen_reftransV1_0096983; organism=Gossypium barbadense; type=contig; length=1996bp
GTTGTCTTATAAAAAAGTACCTTTTCCCCCTATTTCACAAGTACATAATC
AATGAACGTTAATGAAAGGCAGTTCATAAAAACTATCCCTCACAGAATGA
CACTACAGAAAGGAACGATACATGATTCCTTAAAAAAAAAAAACTGTTGT
AATAAAGCTTGAATATGCAGTCCTCCACAATCGCGCTCATGCAATAAACC
AAATGTAAAGGTCAACCCCGCAATTGAGAAAGGATGAAATTATACCATGA
ATATTACTTCCTTCTAAACTTACATGTATACTGCAAACACTCATCCCTCT
TTTGTTATCATTTGGCCTCAACCTCATCTGCTCATATTATAACAACGCCG
TGTTCGATTGTGAAACACCATCTGTGGAGTTACTTTCACTCAACAGTCGC
TCCTCCACCTCCTCGAGTCTTTGCAACCACTTTAGTGCAAGGTCACATCC
AGCTGTTGCTGCTATTCGAAATTGTTCTTTTGCCATTTCAACAGGGTTCC
CTGCTCGGTGGTCCACATTCTTCGTTGTTCTTTTGGCAGCAGAACCCCTC
TTTGAACTAAATTTTGTTAGGCATTCTGGGACTTGAGCACCTAAGAAATA
GTACTATTTAACAATTCAATCAGCATATGTCAACCAAAGTAAAATGTAAA
GCTAGTTGTCATTTTCATTGCAATATGTTCCATTTTTACCTTCAATCCGA
GTTACACCAGCTAATACATGTTAATATGATAACTTCCTAAAAACTCACTA
GCTATGGTGTCAAAGGCAAATTCATGAGAAGGTGCATGTGTATATTTAAC
CTCTAAGTAGCAGAGATCCATATGCTATAGCTGCTCCAGCATGTCCTTTC
TCCGATGCCCGGTGGAAACACCATAATGCTGAAGAAATGTCTTTCTTCAC
ACAGTCCCCCGTCAAGTATACAGCACCTAGAAGGTAAAGAGCACCTGGAT
GAAGCTGGTCTACAGCTTTCTCCAAATAATAGAAAGCTTGTTGATCTGAT
TGGACATAGTCATTCTGTCCAACATAATGACCATGATGTTAGAAAGCTAA
AGATGTCATTTGCAGAAAGACTTAACAGCTCACTGAGGTGTACTCCTTAA
AAGAGTTCCTCAACAAAATTATTAAAGAAACATTTTAAGAAAAATGATCC
GAACCTCGACTCTTAGGCGACAACCCAATTCATATTGGGCGTCTTTATCG
CCCATATCTGCAGCTTCTACTAACAAAGCAGCACCTCTATCATAATAAGG
CCATTAGTTTTCCATTAGATTATTTAATCTAACATCTAATACAAACAGGA
TGAGATTACAACCAAAAAAACATTAACATGGAAATAAAACATAAGAAATC
ATATACTTAATAGAAGGATGCTAACAATCATTGAAAATTTTCACATGCAT
CAACTTAAGACACTAACATAATTTCAATCAATGTAGCTAACAATGGTGAG
AACAGAACACGCAAAATCTGAATTTTGTGCTCTCATAATTCAATAAAATA
ACTATTCAAGTTAATAACCAGACTTACACGGCTTTACATGCCCCAGGAAC
ATGGTACTTCAAATGCAATTTGGACAGCCAATACCTAGCATGTGTATTGG
AATTATCAGCTTCCAATGCCAACTCAAAATTCTCCTTTGCTGCCCTTAGG
AGAGGGATGAGGCGTTTATCATTGAGCTCGCAGTAATCAATAACTCTGTC
AACTTCTTTCAAAGCACTCCACCCTTTTGCTATTAACTCCATTGCTTTCT
TGTTTCTGCTATGCATCTCCCTCTTTAACAAAAAAAATACAAACCCACAA
TTGTCAACGTATTGGGAAAGTGAGAAATTTGAAAGAGAAAAACAGAGAAA
TATGACCGACGTGTGGATTAAACTGAATAAAACTGAAAGTGGCATATTTG
GCTGTTGATTTTGCGAAGAGCTGTCTCAGCATCGTCTCCCTAAGTGACTG
AGTTTGTGAAGAAATGGCTTTTCTGTACTCTGTTTTGATGTTGTTG
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