g.barbadense_cottongen_reftransV1_0096982, g.barbadense_cottongen_reftransV1_0096982 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0096982
Unique Nameg.barbadense_cottongen_reftransV1_0096982
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2404
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt05chromosomeg.barbadense_cottongen_reftransV1_0096982:1..2404 .
Dt05:13423056..13431129 -
Homology
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Match: Y4990_ARATH (Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1)

HSP 1 Score: 684.871 bits (1766), Expect = 0.000e+0
Identity = 381/651 (58.53%), Postives = 473/651 (72.66%), Query Frame = 2
Query:  158 YGAQVCAVISALLLLFSVSILYSRLSLSSKSHMYPHHSSVDNNDAVFHSIPLLSDSEDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNK-------KDKIFSSGHFYFDHLSGSIRRAFNKRSIQDWDYD-GGFLNEGFSGEDVKIKATFGSDDIPLDEEVRSKMTEVESIEDALLVKKVAGRKVNPLREKWGDWFDKKSDFLRRDRMFKSXXXXXXXXXXXXXQDPDGIGATGLTRGDKMVQKWILSEFKKVPFTGKKPLGISETGLKVNKGSESKKNENARNVLXXXXXXXXXXXXXNTNRNESRIRKIEVKNGDLETYKTNTEFSGHIYADGKRWGYYPGLDSRLSFTDFVDAFFKKGKCDMRVFIIWNSPPWMYSVRHQRGLESLLAQHRDACVLVFSETIELDFFKDSFLKDGYKVAVAMPNLDELLKDTPTHVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQ--GSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVKPSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWNSLTSALIPEPKSLVARLINHPCIHCSELL 2080
            +GAQ CAV+SA+LLL SVS+LY+RLSL S SH   H  S  + D V     +L    DV TT           E    E +D  EDD  +  E E     +       ++K  SS  FYFDH++G IRRAFNKRSI +WDYD  GF  +  S  D   +A FGSDD+PLDE +R K+ EV S+EDALL+K  +G+KV+PLR+ WGDWFDKK DFLRRDRMFKSN+E LNPLNNP+LQDPD +G TGLTRGDK+VQKW L++ K+ PF  KKPL +             KK  N   +LS        +    T  N+ +I + E KN  +E+ + + E + H+YADG +WGYYPG++  LSF+DF+D+FF+K KC MRVF++WNSP WM+SVRHQRGLESLL+QHRDACV+VFSET+ELDFF++SF+KD YKVAVAMPNLDELL+DTPTHVFAS+WF WRKTKFY  HYSELVRLAALYKYGG+YLDSD+IVL  L +L N++G+EDQ  G SLNGA+M+F K+SPF++ECLNE+YLTYDD  LR NGADLL+RVAKRF NGKN  + Q ELN++PS+VFFPI+SQ I  YF  P  E E+ QQD  F +IL ES+TFHFWNS+TS+LIPEP+SLVA+ ++H CI CS++L
Sbjct:   11 HGAQACAVMSAVLLLASVSLLYTRLSLFS-SHSPNHLRSGSSEDTVLFPDSVLVSDSDVETTGGGGRGSTTSTEDRIDEHDDAIEDDGVSNEEDENQDAEQEQEVDLNRNKAASSSGFYFDHVNGVIRRAFNKRSIDEWDYDYTGFSIDSDSSGDKSSRAAFGSDDVPLDESIRRKIVEVTSVEDALLLK--SGKKVSPLRQGWGDWFDKKGDFLRRDRMFKSNIETLNPLNNPMLQDPDSVGNTGLTRGDKVVQKWRLNQIKRNPFMAKKPLSVVS----------EKKEPNEFRLLSSVGEIKRGER--KTLDNDEKIEREEQKN--VESERKHDEVTEHMYADGTKWGYYPGIEPSLSFSDFMDSFFRKEKCSMRVFMVWNSPGWMFSVRHQRGLESLLSQHRDACVVVFSETVELDFFRNSFVKDSYKVAVAMPNLDELLQDTPTHVFASVWFDWRKTKFYPTHYSELVRLAALYKYGGVYLDSDVIVLGSLSSLRNTIGMEDQVAGESLNGAVMSFEKKSPFLLECLNEYYLTYDDKCLRCNGADLLTRVAKRFLNGKNRRMNQQELNIRPSSVFFPINSQQITNYFAYPAIEDERSQQDESFKKILNESLTFHFWNSVTSSLIPEPESLVAKFLDHSCIRCSDVL 644          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Match: A4GAT_MOUSE (Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus GN=A4galt PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.254e-19
Identity = 69/211 (32.70%), Postives = 111/211 (52.61%), Query Frame = 2
Query: 1448 NLDELLKDTPTHV-FASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQGSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVK--PSAVFFPISSQHIIRYF--VSPTTESEKLQQDALFNRILTESVTFHFWN--SLTSALIPEPKSLVARLINHPC 2059
            +L EL +DTP    ++    +W   +   +  S+  R+A L+K+GGIYLD+D IVLK LL L N++G++ +   LNGA +AF ++  F+  CL++F   Y+       G  LL+RV K++ + +++        V   P   F+PI  Q+  +YF  +SP    E+L Q      +L  +   H WN  S  + L    K+L+A+L    C
Sbjct:  151 DLQELFEDTPLAAWYSEARHRWEPYQLPVL--SDASRIALLWKFGGIYLDTDFIVLKNLLNLTNTLGIQSR-YVLNGAFLAFERKHEFLALCLHDFVANYNGWIWGHQGPQLLTRVFKKWCSIQSLEKSHACRGVTALPPEAFYPIPWQNWKKYFEDISP----EELTQ------LLNATYAVHVWNKKSQGTHLEATSKALLAQLHARYC 348          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Match: A4GAT_RAT (Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus GN=A4galt PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.983e-16
Identity = 68/213 (31.92%), Postives = 108/213 (50.70%), Query Frame = 2
Query: 1448 NLDELLKDTPTHVFASLWF---KWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQGSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVK--PSAVFFPISSQHIIRYF--VSPTTESEKLQQDALFNRILTESVTFHFWN--SLTSALIPEPKSLVARLINHPC 2059
            +L EL +DTP     + W+   + R   +     S+  R+A L+K+GGIYLD+D IVLK L  L N +G++ +   LNGA +AF ++  F+  C+ +F   Y+       G  LL+RV K++ +  ++   +    V   P   F+PI  Q+  +YF  VSP    E+L Q      +L  +   H WN  S  + L    ++L+A+L    C
Sbjct:  152 DLQELFEDTPL----AAWYLEAQHRWEPYLLPVLSDASRIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQSR-YVLNGAFLAFERKHEFLALCIRDFVAHYNGWIWGHQGPQLLTRVFKKWCSIHSLKESRACRGVTALPPEAFYPIPWQNWKKYFEDVSP----EELAQ------LLNATYAVHVWNKKSQGTHLEATSRALLAQLHARYC 349          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Match: A4GAT_PONPY (Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo pygmaeus GN=A4GALT PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.646e-16
Identity = 61/209 (29.19%), Postives = 103/209 (49.28%), Query Frame = 2
Query: 1448 NLDELLKDTP-THVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQGSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVK--PSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWN--SLTSALIPEPKSLVARLINHPC 2059
            +L EL +DTP    + ++  +W       +  S+  R+A ++K+GGIYLD+D IVLK L  L N +G + +   LNGA +AF++   F+  C+ +F   Y+       G  LL+RV K++ + ++++  +    V   P   F+PI  Q   +YF   + E           R+L  +   H WN  S  +      ++L+A+L    C
Sbjct:   10 DLRELFRDTPLADWYTAVQGRWEPYLLPVL--SDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR-YVLNGAFLAFQRRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYFEDISPEE--------LPRLLNATYAVHVWNKKSQGTRFEATSRALLAQLHARYC 207          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Match: A4GAT_HUMAN (Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens GN=A4GALT PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.900e-16
Identity = 58/185 (31.35%), Postives = 96/185 (51.89%), Query Frame = 2
Query: 1448 NLDELLKDTP-THVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQGSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVK--PSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWN 1993
            +L EL +DTP    +A++  +W       +  S+  R+A ++K+GGIYLD+D IVLK L  L N +G + +   LNGA +AF +   F+  C+ +F   Y+       G  LL+RV K++ + ++++  +    V   P   F+PI  Q   +YF       E +  + L  R+L+ +   H WN
Sbjct:  145 DLRELFRDTPLADWYAAVQGRWEPYLLPVL--SDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR-YVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYF-------EDINPEEL-PRLLSATYAVHVWN 318          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Match: A4GAT_PANTR (Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes GN=A4GALT PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.508e-16
Identity = 58/185 (31.35%), Postives = 96/185 (51.89%), Query Frame = 2
Query: 1448 NLDELLKDTP-THVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQGSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVK--PSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWN 1993
            +L EL +DTP    +A++  +W       +  S+  R+A ++K+GGIYLD+D IVLK L  L N +G + +   LNGA +AF +   F+  C+ +F   Y+       G  LL+RV K++ + ++++  +    V   P   F+PI  Q   +YF       E +  + L  R+L+ +   H WN
Sbjct:  145 DLRELFQDTPLADWYAAVQGRWEPYLLPVL--SDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR-YVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRSCRGVTTLPPEAFYPIPWQDWKKYF-------EDINPEEL-PRLLSATYAVHVWN 318          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Match: A4GAT_GORGO (Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.638e-15
Identity = 57/185 (30.81%), Postives = 95/185 (51.35%), Query Frame = 2
Query: 1448 NLDELLKDTP-THVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQGSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVK--PSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWN 1993
            +L EL +DTP    +A++  +W       +  S+  R+A ++K+GGIYLD+D IVLK L  L N +G + +   LNGA +AF +   F+  C+ +F   Y+       G  LL+RV K++ + ++++  +    V   P   F+PI  Q   +YF       E +  + L  R+ + +   H WN
Sbjct:  119 DLRELFRDTPLADWYAAVQGRWEPYLLPVL--SDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSR-YVLNGAFLAFERXHEFMALCMXDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLPPEAFYPIPWQDWKKYF-------EDINPEEL-PRLFSATYAVHVWN 292          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Match: A4GCT_HUMAN (Alpha-1,4-N-acetylglucosaminyltransferase OS=Homo sapiens GN=A4GNT PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 6.987e-9
Identity = 74/308 (24.03%), Postives = 114/308 (37.01%), Query Frame = 2
Query: 1304 SVRHQRGLESLLAQHRDACVLVFSETIELDFFKDS---------------FLKDGYKVAVAMP----------------------NLDELLKDTP-----THVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQGSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGK-----------NISIKQPELNVKPSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWNSLTS---ALIPEPKSLVARLINHPC 2059
            S +  +GLE+LL+  R    L  SE +E                      F   G   +  MP                      ++  LL+DTP       + AS    W          S+  RLA ++KYGGIY+D+D+I ++P+    N +  +    S NG +  F    PF+ EC+  F   Y+       G +L++R+ + +   +           NIS   P+        F+PIS +   RY+       E    +  FN     S   H WN +     A+I    +LV  L    C
Sbjct:   35 SFKSHQGLEALLSHRRGIVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLDMKRLLEDTPLFSWYNQINASAERNWLHIS------SDASRLAIIWKYGGIYMDTDVISIRPIPE-ENFLAAQASRYSSNG-IFGFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTRMLRVWCKLEDFQEVSDLRCLNISFLHPQR-------FYPISYREWRRYY-------EVWDTEPSFN----VSYALHLWNHMNQEGRAVIRGSNTLVENLYRKHC 316          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy TrEMBL
Match: K7N0U6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0
Identity = 360/688 (52.33%), Postives = 449/688 (65.26%), Query Frame = 2
Query:  134 LRSRRRPRYGAQVCAVISALLLLFSVSILYSRLSLSSKSHMYPHHSSVDNNDAVFHSIPLLSDSEDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNKKDKIFSSGHFYFDHLSGSIRRAFNKRSIQDWDYDGGFLNEGFSGEDVKIKATFGSDDIPLDEEVRSKMTEVESIEDALLVKKVAGRKVNPLREKWGDWFDKKSDFLRRDRMFKSXXXXXXXXXXXXXQDPD-GIGATGLTRGDKMVQKWILSEFKKVPFTG---KKPLGISETGLK-----------------------------VNKGSESKKNENARNV----LXXXXXXXXXXXXXNTNRNESRIRKIEVKNGDLETYKTNTEFSGHIYADGKRWGYYPGLDS-RLSFTDFVDAFFKKGKCDMRVFIIWNSPPWMYSVRHQRGLESLLAQHRDACVLVFSETIELDFFKDSFLKDGYKVAVAMPNLDELLKDTPTHVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQ--GSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVKPSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWNSLTSALIPEPKSLVARLINHPCIHCSEL 2077
            LRSRRR  YGA +CAVISA+LLLFSVS+LYSRLS S     +PH   +     V H     S S D++  +     D+     +TL+   +               +N         H +FD LS S+RR+F+ R     D +  F  + FS  D + K  F SDD+P+D  VRS    V +I+DALL+K       +PLRE W DWFDKKS FLR+DRMF+SN ++LNPLNNPLLQDPD G   TGLTRGD++VQKW + EFKKVPF G   K PL ++   L                              VN GS   ++   ++V         S  +  ++S +N  ES I K    + D+           H+YADG  WGYYPGL   RLSF+DF+D FF+ GKC  RVF++WNSPPWMY+VRHQRGLESLL  H DACV+VFSET+ELDFFKDSF+KDGYKVAVAMPNLDELLKD P H+FAS+WF+W+KT FY+ HYSEL+RLAALYKYGGIYLDSDIIVLKP+  LNNSVG+E    GS+LNGA+M+F + S F+ ECL EFY+TYDDT LR NGADLL+RVA+++   +N S+K  EL V+PS +FFP+SSQ+I RYF++PTTE+EK QQD L   IL  S+TFHFWNS+T +LIPEP SLV++L+N+ CI CSEL
Sbjct:    2 LRSRRRSPYGAYLCAVISAVLLLFSVSLLYSRLSRS-----HPHSHHLPRPSLVSH-----STSADISIASSDDPIDELDFIDETLDPPSLR--------------LNPPPY-----HLFFDPLSASLRRSFHHRHS---DNNNNFPFQSFSDNDDRSKTAFASDDVPVDFTVRSMAARVATIDDALLLK------TSPLREGWSDWFDKKSVFLRKDRMFRSNFDVLNPLNNPLLQDPDAGAATTGLTRGDRIVQKWWIHEFKKVPFPGIKKKAPLNVNVNTLTKVGIERRTLNHNHNNNDDDNNNNEIIKEVVNSGSNGGESSIQKDVDVIGADRGVSVKNHVVNSGSNGGESSIEK----DVDVVGAARGVSVKNHVYADGDTWGYYPGLPRLRLSFSDFMDEFFRLGKCVTRVFMVWNSPPWMYTVRHQRGLESLLFHHPDACVVVFSETVELDFFKDSFVKDGYKVAVAMPNLDELLKDMPAHIFASVWFEWKKTNFYSTHYSELIRLAALYKYGGIYLDSDIIVLKPISFLNNSVGMEGHGAGSALNGAVMSFPRHSLFVKECLEEFYMTYDDTSLRGNGADLLTRVARKYLGDENKSVKHLELKVEPSYIFFPVSSQNITRYFIAPTTETEKAQQDVLLENILHNSLTFHFWNSVTFSLIPEPDSLVSKLLNYACIRCSEL 647          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy TrEMBL
Match: K4B7L1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g068790.2 PE=4 SV=1)

HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 359/696 (51.58%), Postives = 478/696 (68.68%), Query Frame = 2
Query:  122 MIRNLRSRRRPRYGAQVCAVISALLLLFSVSILYSRLS-LSSKSHMYPHHSSVDNNDAVFHSIPLLSDSEDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNKKDKIFSSGHFYFDHLSGSIRRAFNKRSIQDWDYDGGF-----LNEGFSGEDVKIKATFGSDDIPLDEEVRSKMTEVESIEDALLVKKVAGRKVNPLREKWGDWFDKKSDFLRRDRMFKSXXXXXXXXXXXXXQDPDGIGATGLTRGDKMVQKWILSEFKKVPFTGKKPLGISE--------TGLKVNKGSESKKNENARNVLXXXXXXXXXXXXXNTNR----------NESRI---------------RKIEVKNGDLETYKTNT--EFSGHIYADGKRWGYYPGLDSRLSFTDFVDAFFKKGKCDMRVFIIWNSPPWMYSVRHQRGLESLLAQHRDACVLVFSETIELDFFKDSFLKDGYKVAVAMPNLDELLKDTPTHVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLED--QGSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVKPSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWNSLTSALIPEPKSLVARLINHPCIHCSELL 2080
            M+RNLR+RRRP YGA +CA+ +A+LLL SVS+LYSRL+     ++ +PH       D +  + PL+ D  D A    +    D++D  D+   ND     +N   E +   +N+  ++ S+ +FY D   G +RRAFNKRSI++W+    F     L  GF  ++   KA FGSDD+P+D ++R K++E+ES+EDALL+K       +PLRE WG+WF+KKSDFLRRDRMFKSNLE LNP NNP+LQDPDG G TGLT+GDK+V K +++EFKKVPF  KKPL +SE          L++ K +   KN+   +   +  S   +    + NR          +++RI                K +++NG+++  + ++  E SG ++ADGKRWGY+PGL  RLSFT+F+D+FF+K KC MRVF++WNSP WM++ R+QRGLES+L +HRDACV+VFSETIEL+FF   F+KDG+KVAV MPNLDELL  TPTHVFAS W++W++T+ Y  HYSELVRLAALYKYGGIYLDSDIIVL  L +L+N+V  ED  +G +LNGA+MAFRK SPF+MECL EFY +YDDT+LRWNGADLL+RVA  FS   N+S ++ E+  +PS VFFPI   +I RYF +P  E+EK +QD LF  IL E+VTFHFWN LTSA++PE  SL  RLIN+ C+ CS+ L
Sbjct:    1 MLRNLRTRRRPLYGAHICALAAAILLLLSVSLLYSRLNFFLQPNNPHPHPLQY---DTISLNNPLVDDLAD-ADYRSSDDRIDELDVADSNNNNDDEFLLSNESEEDDEEIINQYPRVSST-YFY-DQRHGVVRRAFNKRSIEEWEDYVNFESRMKLGLGFKSDES--KAAFGSDDLPVDVQMRMKLSEIESVEDALLLKG------SPLREGWGEWFEKKSDFLRRDRMFKSNLEALNPNNNPMLQDPDGAGTTGLTKGDKIVLKGLMNEFKKVPFLVKKPLSVSELTKSELVNDALELQKMAGLAKNDVFESKELKFNSDLVKTNDEDVNRGKRVKRRTLNDDARIGKRVVHDSGGDSAPRSKEDIRNGNMKVVEDDSRGEVSGLVFADGKRWGYFPGLHPRLSFTNFMDSFFRKAKCTMRVFMVWNSPAWMFTARYQRGLESVLNRHRDACVVVFSETIELNFFS-GFVKDGFKVAVVMPNLDELLLGTPTHVFASFWYEWKQTRHYPFHYSELVRLAALYKYGGIYLDSDIIVLNSLSSLSNTVAFEDDRRGKTLNGAVMAFRKHSPFVMECLKEFYASYDDTQLRWNGADLLTRVASNFSVNGNLSSRKREIKFQPSFVFFPIGHNNITRYFSAPAMETEKTKQDTLFKTILKEAVTFHFWNGLTSAMVPEAGSLAHRLINYNCLRCSDTL 681          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy TrEMBL
Match: V7CI33_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G098100g PE=4 SV=1)

HSP 1 Score: 601.668 bits (1550), Expect = 0.000e+0
Identity = 320/542 (59.04%), Postives = 391/542 (72.14%), Query Frame = 2
Query:  479 SGHFYFDHLSGSIRRAF-NKRSIQDWDYDGGFLNEGFSGEDVKIKATFGSDDIPLDEEVRSKMTEVESIEDALLVKKVAGRKVNPLREKWGDWFDKKSDFLRRDRMFKSXXXXXXXXXXXXXQDPDGIGATGLTRGDKMVQKWILSEFKKVPFTGKK--PLGISETGLKVNK-GSESKKNENARNVLXXXXXXXXXXXXXNT--NRNESRIRKIEVKNGDLETYKTNTEFSGHIYADGKRWGYYPGLDSRLSFTDFVDAFFKKGKCDMRVFIIWNSPPWMYSVRHQRGLESLLAQHRDACVLVFSETIELDFFKDSFLKDGYKVAVAMPNLDELLKDTPTHVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQGS--SLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVKPSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWNSLTSALIPEPKSLVARLINHPCIHCSELL 2080
            S  +YFD L+ SIRR+F +  S++    D           D   KA F SDD+P+D+  R+ +T V ++EDALL+K       +PLR+ WG+WFDKKS FLR+DRMF+SN E+LNPLNNPLLQDPD +GATGLTRGD+MVQKW + EFKKVPF G K  PL I+     V K G+E +   +     +            N+  N  ES I+      G     K N     HIYADG  WGYYPGL  RL F  F+DAFF+ GKC  RVFI+WNSPPWMY+VRHQRGLESLL  H  ACV+VFSE +ELDFFKDSF+KDGYKVAVAMPNLDELLKDTP H+FAS+WF+W+KT+FY+ HYSEL+RLAALYKYGGIYLDSDIIVLKP+  LNN VG+ED+G+  +LNGA+MAF+K S FI ECL EFY+TYDDT LR NGADLL+RVA+++   +N S+   +L V+PS +FFP+SS +I RYF++PTTE++K QQD L   IL +S+TFHFWNSLT +LIPEP SLV+RL NH CI C ELL
Sbjct:   82 SPDYYFDPLTASIRRSFLSPPSLRQSHTDNNLPLRSVPDHDPS-KAAFASDDVPVDDATRTMVTRVATMEDALLLKN------SPLRDGWGEWFDKKSVFLRKDRMFRSNFEVLNPLNNPLLQDPDAVGATGLTRGDRMVQKWWIHEFKKVPFPGTKKVPLNINVLPTPVTKVGAERRTLNHNTINNNNNNEHEIIQEVMNSGINGGESSIQNDANVIGARSQSKKN-----HIYADGDTWGYYPGLPLRLPFNTFMDAFFRVGKCVTRVFIVWNSPPWMYTVRHQRGLESLLFHHPAACVVVFSEMVELDFFKDSFVKDGYKVAVAMPNLDELLKDTPAHIFASVWFEWKKTEFYSTHYSELIRLAALYKYGGIYLDSDIIVLKPISLLNNCVGMEDRGAGRALNGAVMAFQKHSLFIKECLEEFYMTYDDTSLRGNGADLLTRVARKYLAEENKSVNNLKLKVEPSYIFFPVSSLNISRYFIAPTTETDKAQQDVLLENILHKSLTFHFWNSLTFSLIPEPDSLVSRLFNHACIRCLELL 611          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy TrEMBL
Match: A0A022RT26_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002953mg PE=4 SV=1)

HSP 1 Score: 595.89 bits (1535), Expect = 0.000e+0
Identity = 312/546 (57.14%), Postives = 391/546 (71.61%), Query Frame = 2
Query:  479 SGHFYFDHLSGSIRRAFNKRSIQDWDYDGGFL-----NEGFSGEDVKIKATFGSDDIPLDEEVRSKMTEVESIEDALLVKKVAGRKVNPLREKWGDWFDKKSDFLRRDRMFKSXXXXXXXXXXXXXQDPDGIGATGLTRGDKMVQKWILSEFKKVPFTGKKPLGI--SETGLKVNKGSESKKNENARNVLXXXXXXXXXXXXXNTNRNESRIRKIEVK---NGDLETYKTNTEFSGHIYADGKRWGYYPGLDSRLSFTDFVDAFFKKGKCDMRVFIIWNSPPWMYSVRHQRGLESLLAQHRDACVLVFSETIELDFFKDSFLKDGYKVAVAMPNLDELLKDTPTHVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQ--GSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVKPSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWNSLTSALIPEPKSLVARLINHPCIHCSELL 2080
            S +++FD + G IRR+FN+RSI++W+    F      + GF  +D +    FGSDD+ +DE++R K++EV+ IEDALL+K         LRE WG+WFDKK DFLRRDRMFKSN+EILNPLNNP+LQDPDG G TGLTRGDK+ QK ++ EFK+ PF  KKPL I  SETG+   KG                              NE  +R++E K   N  +   + +   +   YADGKRWGYYPGL+ RLSF +F+DAFF++G C MRVF++WNSP W + VR QRGLESLL  H DACV+VFSETIEL+FF   F+KDGYKVA  MP+LDELL+DTPTH+FAS+W  W+KT+ Y IHYSELVRLAALYKYGGIYLDSDI+VLKPL  LNN+VG ED   G +LNGALMAFRK SPFIM CL EFY +YDD++LRWNGADLL+RVA +  + ++ SI   EL+++P++VFFPI    I+RY  +P TE +K +QD +FN+I  ESVT HFWNSLTSA+IPEP+SLV R +N  CI CS++L
Sbjct:  116 SSNYFFDPVKGVIRRSFNRRSIEEWEDYVPFSWKLTSDLGFKNDDTE--PVFGSDDVLVDEKLRKKLSEVKKIEDALLLKGSV------LREGWGEWFDKKGDFLRRDRMFKSNIEILNPLNNPILQDPDGTGVTGLTRGDKIFQKGLMDEFKRTPFLIKKPLAISESETGIVGEKG------------------------------NEKEVRRVERKTLDNNQINKVRGSKALAKEYYADGKRWGYYPGLNGRLSFGNFMDAFFRRGMCKMRVFMVWNSPVWAFGVRQQRGLESLLYHHADACVVVFSETIELNFFT-GFVKDGYKVAAVMPDLDELLRDTPTHIFASVWHDWKKTRHYPIHYSELVRLAALYKYGGIYLDSDILVLKPLSELNNTVGYEDDSAGKTLNGALMAFRKHSPFIMSCLEEFYASYDDSKLRWNGADLLTRVANKVLSKEDNSITTTELSLQPASVFFPIGHNTILRYLTAPGTEIDKAEQDVVFNKISNESVTVHFWNSLTSAMIPEPESLVFRFLNRYCIRCSDVL 622          
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy TrEMBL
Match: Q2MGS1_MEDTR (Alpha 1,4-glycosyltransferase family protein OS=Medicago truncatula GN=MTR_4g084060 PE=4 SV=1)

HSP 1 Score: 588.186 bits (1515), Expect = 0.000e+0
Identity = 311/538 (57.81%), Postives = 378/538 (70.26%), Query Frame = 2
Query:  488 FYFDHLSGSIRRAFNKRSIQDWDYDGGFLNEGF---SGEDVKIKATFGSDDIPLDEEVRSKMTEVESIEDALLVKKVAGRKVNPLREKWGDWFDKKSDFLRRDRMFKSXXXXXXXXXXXXXQDPDGIGATGLTRGDKMVQKWILSEFKKVPFTGKKPLGISETGLKVNKGSESKKNENARNVLXXXXXXXXXXXXXNTNRNESRIRKIEVKNGDLE--TYKTNTEFSGHIYADGKRWGYYPGLDSRLSFTDFVDAFFKKGKCDMRVFIIWNSPPWMYSVRHQRGLESLLAQHRDACVLVFSETIELDFFKDSFLKDGYKVAVAMPNLDELLKDTPTHVFASLWFKWRKTKFYTIHYSELVRLAALYKYGGIYLDSDIIVLKPLLTLNNSVGLEDQ--GSSLNGALMAFRKESPFIMECLNEFYLTYDDTRLRWNGADLLSRVAKRFSNGKNISIKQPELNVKPSAVFFPISSQHIIRYFVSPTTESEKLQQDALFNRILTESVTFHFWNSLTSALIPEPKSLVARLINHPCIHCSELL 2080
            ++FD ++ SIRR+F    I    +      + F   S      K  F SDDIPLD+EVR K T + SIEDALL+K  +      LRE WG+WFDKKS FLR+D+M KS+ E  NP+ NPLLQDPD +G + LTRGDK++QKW ++EFKKV F+  K                                        NTN N + +    V  G  E  T K N     HIYADG  WGY+P L  RLSF DF+DAFF+KGKC MRVF++WNSPPWM++VR+QRGLESLL  H +ACV+VFSETIELDFFKDSF+KDGYK+AV MPNLD+LL+ TP ++F+++WF+WRKTKFY+ HYSEL+RLAALYKYGGIYLDSDIIVLKP+  LNNSVG+EDQ  GSSLNGALMAF + S FI ECL EFY+TYDD  LRWNGADLL+RVA++F   +N +IKQ ELN +PS VF+PI+S  I RYFV+PTTE +K QQD L  +IL ES+TFHFWNSLTSAL+PEP SLVA+L+N+ CI C ELL
Sbjct:   92 YFFDPITSSIRRSFKTPPI----FTSSITTDDFTILSPPQDPSKFAFTSDDIPLDDEVRRKATVITSIEDALLLKSPS------LREIWGEWFDKKSVFLRKDKMLKSSFEAFNPMLNPLLQDPDSVGVSSLTRGDKVLQKWWINEFKKVSFSVHK----------------------------------------NTNNNGNLV---TVAKGGTERRTLKLNDNGDNHIYADGNNWGYFPELPLRLSFNDFMDAFFRKGKCVMRVFMVWNSPPWMFTVRYQRGLESLLFHHPNACVVVFSETIELDFFKDSFVKDGYKIAVVMPNLDQLLEGTPANIFSTVWFEWRKTKFYSTHYSELIRLAALYKYGGIYLDSDIIVLKPISFLNNSVGMEDQAAGSSLNGALMAFGRHSLFIKECLEEFYMTYDDNSLRWNGADLLTRVAQKFVGEENKTIKQLELNKEPSHVFYPINSHDITRYFVAPTTEMDKAQQDVLLEKILHESLTFHFWNSLTSALVPEPDSLVAKLMNYACIRCLELL 576          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 8
Match NameE-valueIdentityDescription
Y4990_ARATH0.000e+058.53Uncharacterized protein At4g19900 OS=Arabidopsis t... [more]
A4GAT_MOUSE7.254e-1932.70Lactosylceramide 4-alpha-galactosyltransferase OS=... [more]
A4GAT_RAT3.983e-1631.92Lactosylceramide 4-alpha-galactosyltransferase OS=... [more]
A4GAT_PONPY4.646e-1629.19Lactosylceramide 4-alpha-galactosyltransferase (Fr... [more]
A4GAT_HUMAN4.900e-1631.35Lactosylceramide 4-alpha-galactosyltransferase OS=... [more]
A4GAT_PANTR6.508e-1631.35Lactosylceramide 4-alpha-galactosyltransferase OS=... [more]
A4GAT_GORGO1.638e-1530.81Lactosylceramide 4-alpha-galactosyltransferase (Fr... [more]
A4GCT_HUMAN6.987e-924.03Alpha-1,4-N-acetylglucosaminyltransferase OS=Homo ... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0096982 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K7N0U6_SOYBN0.000e+052.33Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K4B7L1_SOLLC0.000e+051.58Uncharacterized protein OS=Solanum lycopersicum GN... [more]
V7CI33_PHAVU0.000e+059.04Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A022RT26_ERYGU0.000e+057.14Uncharacterized protein OS=Erythranthe guttata GN=... [more]
Q2MGS1_MEDTR0.000e+057.81Alpha 1,4-glycosyltransferase family protein OS=Me... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007652Alpha 1,4-glycosyltransferase domainPFAMPF04572Gb3_synthcoord: 522..651
e-value: 8.5E-27
score: 93.8
IPR007577Glycosyltransferase, DXD sugar-binding motifPFAMPF04488Gly_transf_sugcoord: 396..511
e-value: 4.2E-24
score: 84.9
NoneNo IPR availablePANTHERPTHR12042:SF13SUBFAMILY NOT NAMEDcoord: 162..653
NoneNo IPR availablePANTHERPTHR12042LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE ALPHA- 1,4-GALACTOSYLTRANSFERASEcoord: 162..653
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..653
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 349..628

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0096982 ID=g.barbadense_cottongen_reftransV1_0096982; Name=g.barbadense_cottongen_reftransV1_0096982; organism=Gossypium barbadense; type=contig; length=2404bp
TGTTAATTTCCCACGATAGCCAAATGCTCCAGGTGAAGGCTAGGAACTTT
CTGCACTGTCGCACTCCGTCTTCTCTTTTATCCATTGCCGGAATTCGCTA
AGAGTTTAACGGCGGGGGAAAATGATTCGGAATCTCCGATCTCGGCGGCG
GCCACGTTACGGCGCACAGGTATGTGCTGTGATCTCAGCTCTTCTCCTCT
TATTTTCAGTATCTATTCTCTACAGCCGCCTTTCCCTCTCTTCCAAATCC
CACATGTATCCCCACCACTCCTCCGTAGATAACAACGACGCGGTTTTCCA
CTCCATCCCTCTCCTCTCCGACTCCGAAGACGTCGCCACCACCACCATCA
CCTCCTCAACCGACGACAAAATTGACGAACTCGATACTCTCGAAGAAAAC
GACATAACCGAAGACGACAACAACAATGAGATCGAGCAAGAAATCACGAC
TATGAATAAAAAAGACAAGATCTTTTCGTCTGGGCATTTTTATTTCGACC
ATTTAAGTGGATCAATCAGAAGAGCTTTCAATAAACGTTCGATTCAAGAT
TGGGATTACGATGGAGGGTTTTTGAACGAAGGGTTTTCGGGGGAAGATGT
CAAAATTAAGGCAACCTTTGGATCCGATGATATCCCATTGGATGAGGAAG
TTAGGAGCAAGATGACTGAAGTGGAAAGTATTGAAGATGCTTTGCTGGTC
AAGAAAGTTGCCGGGAGAAAAGTGAACCCTTTGAGGGAGAAATGGGGTGA
TTGGTTTGATAAGAAAAGTGATTTTTTGAGAAGGGATAGAATGTTTAAGT
CGAATTTGGAGATTTTGAATCCTTTGAATAATCCTTTGCTGCAAGACCCT
GACGGGATTGGTGCTACTGGCTTGACTAGAGGGGATAAAATGGTGCAGAA
GTGGATTTTGAGTGAGTTTAAGAAGGTCCCTTTTACTGGGAAGAAGCCCT
TGGGGATTTCCGAGACGGGCTTGAAGGTTAATAAAGGCAGTGAGAGTAAG
AAAAATGAAAATGCGAGGAATGTGTTAAGCGAAAGAGAAAGTAGTAGCAG
TGAAGATTTGAGTTCAAATACAAATAGGAATGAAAGTAGAATTAGGAAGA
TTGAGGTCAAGAATGGAGATTTGGAGACTTATAAGACTAACACTGAGTTT
TCAGGCCATATATATGCGGATGGAAAGAGATGGGGTTACTATCCTGGATT
GGACTCAAGGTTGTCTTTTACAGATTTTGTGGATGCATTTTTTAAGAAAG
GGAAGTGTGATATGAGAGTTTTTATAATATGGAATTCCCCTCCATGGATG
TATAGTGTTAGGCACCAAAGGGGGCTAGAGAGTCTGCTTGCTCAGCATAG
AGATGCTTGTGTCTTAGTGTTCTCCGAAACGATTGAGCTTGATTTCTTCA
AAGATAGCTTTTTGAAAGATGGTTACAAAGTTGCTGTAGCAATGCCAAAC
CTTGATGAATTGTTGAAAGATACACCTACCCATGTATTTGCATCTTTGTG
GTTTAAATGGAGAAAGACAAAATTCTATACTATCCATTATAGTGAGCTCG
TTCGACTTGCTGCTCTTTACAAATATGGTGGCATTTATCTTGATTCTGAC
ATTATAGTTCTGAAACCGTTACTGACACTCAATAATTCTGTGGGCCTTGA
AGATCAAGGAAGCTCTTTGAATGGAGCTTTAATGGCATTTAGAAAGGAGA
GTCCTTTTATAATGGAGTGTTTGAATGAGTTCTATTTGACGTATGATGAT
ACCCGATTGAGATGGAATGGGGCTGATCTTCTATCAAGAGTTGCAAAAAG
GTTTTCGAATGGAAAGAACATATCCATCAAACAGCCAGAGTTAAATGTGA
AACCTTCCGCTGTTTTCTTCCCTATTAGTTCTCAGCATATTATAAGATAC
TTTGTCTCACCGACGACAGAATCTGAGAAATTGCAGCAAGATGCTTTATT
CAACAGGATTCTGACCGAGTCTGTGACGTTTCATTTCTGGAACAGCTTGA
CGTCTGCGCTCATTCCAGAGCCAAAGAGCCTCGTAGCCAGGCTTATTAAC
CATCCATGTATTCATTGCTCCGAATTGTTGTGAATTTCACATCTCTCTTT
GGTGTTGCCAAAGAATTAATCAAAGCAATTATTTTTTAACCGACGGTCAC
AAAATGGTTTATGATATTTTTAGGTTTTCAATTTCATGTTAGAAATCAAC
ATAGTTGTAAAGTCTCTATAATCTCATTCCTCCAATTTTGCCAATGATTA
GGCTCCCCAACCAAGTCAAAGTTGATCTTTTGTAATTTTATTGCCAATTA
AATAGCTCAGCTGGTAATATATACCTTTGGCCGTTGTGCAAATAAGACAT
GGCTGCCTAATGAATAGAAGTGGTTTCTTTATTAAATAGTCATTTTGATC
CATC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR007652A1-4-GlycosylTfrase_dom
IPR007577GlycoTrfase_DXD_sugar-bd_CS
IPR029044Nucleotide-diphossugar_trans