g.barbadense_cottongen_reftransV1_0091909, g.barbadense_cottongen_reftransV1_0091909 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0091909
Unique Name	g.barbadense_cottongen_reftransV1_0091909
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3433

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.333e-28
Identity = 63/216 (29.17%), Postives = 106/216 (49.07%), Query Frame = 3

Query: 1965 EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPK-SAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLI 2609
            EI   ++++   K+  PD F + F+Q F   +   +      +  +G+        NI LIPK    P    N++PI L ++  KI+ K++ NR+Q+ +   I   Q  F+PG     N+  +  ++  +   ++  K  M   ID  KA+D ++  F+ + + K+G +  ++  I    +  T ++ILNGV    F    G RQG PLSPLLF I
Sbjct:  456 EIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHIN--KLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNI 669

HSP 2 Score: 58.5362 bits (140), Expect = 9.333e-28
Identity = 49/197 (24.87%), Postives = 87/197 (44.16%), Query Frame = 1

Query: 2587 LALCYFSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLG--LPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLL--PMTTCYEMEQLMANFWWQKGK 3165
            L+   F+ V E L+  +R   EE  +KGI       ++S  LFADD I++ E T    T   ++++EY   SG  IN  KS  F  +N  +     + + +          YLG  L   V    +  ++ L+  I   ++ W     S  G+   +K  + P   Y  +   +  P++   ++E+++ +F W + K
Sbjct:  662 LSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSEEIKLS--LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQ-AEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKK 852

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.190e-26
Identity = 70/234 (29.91%), Postives = 117/234 (50.00%), Query Frame = 3

Query: 1923 EDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLN----KGMSLQPLNHMNIVLIPKSAHPNSPI-NFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLI 2609
            E +NR +       EIV  + S+   K+  PD F A F+Q++     +E+  F L++      +G+        +I+LIPK     +   NF+PI L ++  KI+ K++ NR+Q+ +   I   Q  F+PG     N+  +  ++  +   R   K  +   ID  KA+D+++  F+ + + K+G D  ++  I    +  T ++ILNG     F  + G RQG PLSPLLF I
Sbjct:  447 ESLNRPITGS----EIVAIINSLPTKKSPGPDGFTAEFYQRY----KEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHIN--RAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNI 670

HSP 2 Score: 50.0618 bits (118), Expect = 1.190e-26
Identity = 50/199 (25.13%), Postives = 86/199 (43.22%), Query Frame = 1

Query: 2587 LALCYFSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLG--LPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFL--LPMTTCYEMEQLMANFWWQKGKGK 3171
            L+   F+ V E L+  +R   +E  +KGI+  +   ++S  LFADD I++ E          +++  + + SG  IN +KS  F  +N  +   + I   L    ++    YLG  L   V    +  ++ L   IK   + W     S  G+   +K  + P   Y  +     LPMT   E+E+    F W + + +
Sbjct:  663 LSPLLFNIVLEVLARAIR---QEKEIKGIQLGKEEVKLS--LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQ-TESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAR 855

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.112e-20
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1

Query: 3070 IPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYE-GGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIWAAKRLL 3426
            +P Y MSCF L    C ++   M  FWW   + KR I W  W  L K K + GGLG+R+L  FN ALL K  + +I    +LL+R L+ +Y+ +S  +   +G  PSY W+SI   + LL
Sbjct:    3 LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELL 122

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.348e-17
Identity = 68/217 (31.34%), Postives = 100/217 (46.08%), Query Frame = 3

Query: 1965 EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVG-KKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLIC 2612
            E+ +AL+ +   K+   D     FFQ FW  +G +      E   KG          + L+PK        N++P+ L S  YKI+ K I  RL+ VL   I P QS  VPGR I DNV +  ++LH  R  R G    F++  +D  KA+DRV+  +L   +    F  ++V  +     +    V +N          RG+RQG PLS  L+ + 
Sbjct:  453 ELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFAR--RTGLSLAFLS--LDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLA 665

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.952e-15
Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = 1

Query: 2929 LPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIW 3408
            +P +  R  +  F  + +R+  R+  W  + LS  G+    KA+L  +P ++MS  LLP +    ++QL   F W     K+  H   W  +   K EGGLG R     N AL+ K GW L+    SL    L++KY+     +R      P  +W S W
Sbjct:    1 MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGE--IRDSRWLIPKGSWSSTW 158

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.526e-13
Identity = 59/216 (27.31%), Postives = 104/216 (48.15%), Query Frame = 3

Query: 1965 EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPK-SAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLI 2609
            EI   + S+   K+  PD F A F+Q F   +   + +   ++  +G          I LIPK    P    NF+PI L ++  KI+ K++ NR+Q+ + + I P Q  F+PG     N+  +  ++H +   ++  K  M   +D  KA+D+++  F+ +++ + G    ++  I    +    ++ +NG        + G RQG PLSP LF I
Sbjct:  464 EIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYIN--KLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNI 677

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.360e-12
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 3

Query: 2523 ILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            I+NG P  +  P RGLRQGDPLSP LF++C+
Sbjct:   13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCT 43

HSP 2 Score: 48.1358 bits (113), Expect = 1.360e-12
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADD 2724
            F    E LS L R A E+GRL GI+ S   P+I+HLLFADD
Sbjct:   39 FILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADD 79

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: PO22_POPJA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.531e-11
Identity = 49/183 (26.78%), Postives = 89/183 (48.63%), Query Frame = 3

Query: 2100 KGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVF--VPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNP---ERGLRQGDPLSPLLF------LICS 2615
            +G    P   M   LIPK     +P N++PI + S   +++ +++  RL+  ++  + PAQ  +  + G L+   +L  Y     + ++R  +K +    +D+ KA+D V    + + + ++G DE     I   ++  T ++ +   PG         RG++QGDPLSP LF      L+CS
Sbjct:   49 RGHVPTPWTAMRTTLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE--LHPAQKGYARIDGTLVNSLLLDTY-----ISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVG--PGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCS 222

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: POLR_DROME (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.436e-9
Identity = 46/168 (27.38%), Postives = 77/168 (45.83%), Query Frame = 3

Query: 2139 VLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMA---SKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICSGRTFYT 2633
            V IPK+     P +F+PI + S+  + +  ++  RL   ++   DP Q  F+P     DN  I   +L      R   K F +   + +D++KA+D +    +   +   G  + +V  +         S+  +G     F P RG++QGDPLSP+LF +   R   T
Sbjct:  401 VFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSIN--WDPRQRGFLPTDGCADNATIVDLVL------RHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRT 560

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: PO21_NASVI (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis PE=3 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 9.828e-8
Identity = 42/156 (26.92%), Postives = 71/156 (45.51%), Query Frame = 3

Query: 2136 IVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLF 2603
             VLIPK      P  F+P+ + S+  +   +++ NR+ +     +D  Q  F+    + +N  +   ++   +  R+  KG   + +D+ KA+D VE   +   + +     E    IM         + +    G    P RG+RQGDPLSPLLF
Sbjct:  374 TVLIPKEPGTMDPACFRPLSIASVALRHFHRILANRIGE--HGLLDTRQRAFIVADGVAENTSLLSAMI---KEARMKIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLF 524

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q7XCU0_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g37170 PE=4 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.024e-151
Identity = 108/275 (39.27%), Postives = 155/275 (56.36%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIWAAKRLL 3426
            F    EGLS LL      G L+GIK  R GP ISHLLFADD I F +A  R +   +  L+ Y   SGQ IN  KS++FF     + V+ ++ + L V      ++YLG+P  +G      F+ L +RI  R++ W+ R LS  G E  +KA+ Q IP Y MSCF +P++ C +M+  +A+ WW    GK+ +HW  W  L   K+ GG+G+R    FN A+L +  W L+ +  SL +R LK +Y+ NS F  +    SPS+TW+S+   + LL
Sbjct:  616 FLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELL 890

HSP 2 Score: 197.978 bits (502), Expect = 1.024e-151
Identity = 105/241 (43.57%), Postives = 146/241 (60.58%), Query Frame = 3

Query: 1893 LLSGVKKCVNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            +L  +   V + +N  L   Y   EI  AL  +G TKA  PD FPA+F+Q  W I+ + IC      L      + L    +VLIPK  + +    F+PI LC++ YKI  K++ NRL+  L   +   QS FVPGRLITD+ L+AYE LHT+R K+  K  F A KIDM KAYDRVEW +L   + K+GF ++W+  +M+C+++V Y+V +NG       P RG+RQGDP+SP LFL+C+
Sbjct:  381 VLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIR-KQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCT 620

HSP 3 Score: 180.259 bits (456), Expect = 1.024e-151
Identity = 114/363 (31.40%), Postives = 183/363 (50.41%), Query Frame = 1

Query:  820 GFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNR------FKFESWWLMEPNCADVIRQLWDEKSG------DAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKSK 1872
            GF     +S  G  GG+ L W   Y V++  ++   +D  VS E+     R +  YG P+   R   WNLLRRL +   G W  C DFNE++   E  G   R+E  ++ FR  L DC L+DLG+ G K+TW      N+N + +LDR VAN  +   F +  V+N+    SDH  I I  +++  + G+ R      F+FE+ WL   +  +V+   W   S         ++ L+ +   L+ W ++      RK+  +   L  L     +D VI E   ++ +L    + EE+   QR+R +WLREGD+NT FFH++A+ R++ NRI+ L   +      +E ++ + + ++  LF S+
Sbjct:   14 GFSGSFAVSCEGLSGGLALFWTTAYTVSLRGFNSHFIDVLVSTEELP-PWRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISI--DLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSE 373

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q2QUC2_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g16750 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.158e-149
Identity = 105/233 (45.06%), Postives = 143/233 (61.37%), Query Frame = 3

Query: 1917 VNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            V+ +MN  L  D+ E EI +AL  IGP KA   D FPA FFQ+ W  + K++           +  + +N   IVLIPK   P    +F+PI LC++ YKI+ K +VNRL+ +LD  +   QS FVPGR+ITDN L+A+E  H ++  +   K   A K+D++KAYDRV+W FL+Q M K+GF   W+  IM C+++V YS+  NG     F P RGLRQGDPLSP LFL  +
Sbjct:  991 VSPEMNVDLCKDFTEQEIADALFQIGPIKAPGLDGFPARFFQRNWDAIKKDVVSAVKSFFETSIMPEGVNDTAIVLIPKVDQPMELKDFRPISLCNVIYKIVSKCLVNRLRPILDELVSQNQSAFVPGRMITDNALLAFECFHFIQRNKNANKAACAYKLDLSKAYDRVDWVFLEQTMCKLGFAPRWIKWIMTCLSSVRYSIKFNGTLLDTFAPSRGLRQGDPLSPFLFLFVA 1223

HSP 2 Score: 194.126 bits (492), Expect = 2.158e-149
Identity = 102/268 (38.06%), Postives = 143/268 (53.36%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSI 3405
            F +VA+G S L+      G +  +K  R    ISHLLF DD +LF +A        + +L EY   +GQ +N  K ++ F   +    +  I N L +   N  + YLG P   GR  +G FQ L++++  RI  W    LS GGKE+ +K ++Q IP Y MS F LP + C ++ +L  NFWW   KGKR  HW  W  L K K+ GGL +R+   FN ALL +  W L+D   SL AR +K KYY N   + +  G + S  W++I
Sbjct: 1219 FLFVADGFSRLMEERVAAGDITPVKICRGALGISHLLFVDDTLLFFKADCEQARLIKGVLNEYALGTGQLVNPNKCSILFDDTSHAETQDAIKNLLQIVCHNFEDKYLGFPTPEGRLNKGKFQSLQEKMWKRIILWGENYLSSGGKEIMLKVVIQAIPVYVMSIFRLPESVCEDLNKLARNFWWGADKGKRKTHWRAWSCLTKPKHNGGLAFRDFRLFNQALLARQAWRLLDKPDSLCARVMKAKYYPNGSLVDTAFGGNASPGWRAI 1486

HSP 3 Score: 178.718 bits (452), Expect = 2.158e-149
Identity = 121/399 (30.33%), Postives = 191/399 (47.87%), Query Frame = 1

Query:  712 TIRRFQHTLKLYKPQLVCIMETKLDHRRMKLVRRKCGFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNR-FKFESWWLMEPNCADVIRQLWDEKS-----GDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKSKGLATQT 1890
             +R     +K    Q+V + ET+    R++ +R + G +  +  ++ G  GG+ L W+E+  ++V S +E +VDA +           T  YG PRV +R   W+ L  L++++   W +  DFNE ++ +E    + R E Q+ AFR VL  CELVDLG++G  YT++      +N++ +LDR +A+N+W +++SN +V +L    SDHCPIL+K   +S    R + F +E  W  EP   +VI   W E       GD    L  +   LQ W +       R ++  R  L  L S + D   I    DV   LN  +  EE+ W QR+R +WL+E                              +K+  E ME I  DYF ++F +     Q+
Sbjct:  617 AVRDLIALVKEANSQVVFLSETRQKIERIRRLRSRLGLKGFVGCNSDGLSGGLALFWHESIFMDVKSVNERYVDAYMRLSPEDPLCHVTFVYGEPRVENRHRLWSRLLDLKQSSPLPWMIIGDFNETLWQFEHFSVSKRGEAQMRAFRDVLQICELVDLGFSGVPYTYDNRREGRSNVKVRLDRALADNSWRDIYSNSQVVHLTSSCSDHCPILLKFAADSRQSNRKKCFHYEICWEREPASTEVISLAWAEVGEKRTLGDINFTLGKVMGALQGWSKVKFKNVSRAIEKARKDLATLVSHNADYSEIRRSSDV---LNELLYREEMLWLQRSRISWLKE------------------------------VKSTHE-MEKIETDYFKDMFTADPCIDQS 981

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: A3CI90_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_36426 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 6.072e-149
Identity = 102/208 (49.04%), Postives = 134/208 (64.42%), Query Frame = 3

Query: 1983 KSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFL 2606
            + IGP KA  PD FPA FFQ+ W ++ +E+ +   E  N G+    +N   IVLIPK   P    +++PI LC++ YK++ K +VNRL+ +LD  I P QS FVPGR+ITDN LIA+E  H+++  +       A K+D++KAYDRV+W FL+Q M K+GF   WV  IM CI +V YSV  NG     F P RGLRQGDPLSP LFL
Sbjct:  302 EKIGPLKAPGPDGFPARFFQRNWGLLKEEVVKAVKEFFNTGVMPAGVNETAIVLIPKVDQPIELRDYRPISLCNVLYKVVSKCLVNRLRPILDELISPNQSAFVPGRMITDNALIAFECFHSIQKNKKLSSATCAYKLDLSKAYDRVDWKFLEQSMYKLGFAHCWVNWIMSCITSVRYSVKFNGTLLSTFAPSRGLRQGDPLSPFLFL 509

HSP 2 Score: 208.764 bits (530), Expect = 6.072e-149
Identity = 108/268 (40.30%), Postives = 150/268 (55.97%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSI 3405
            F +V +GLS LL     +G L  +   RR P IS+LLF DD +LF +AT         +L +Y  C+GQ IN EK ++ F   +   V+ ++ + L V  ++  + YLG P   GR  +G FQ L++++  RI  W    LS GGKE+ IKA+LQ I  Y M  F LP + C E+ +L  NFWW   KGKR  HW  W  + K K+ GGLG+R+   FN ALL +  W LI+N  SL  + LK KYY N   + +  G + S  W++I
Sbjct:  508 FLFVVDGLSLLLEERVAQGALSPVHICRRAPGISNLLFTDDTLLFFKATSEQANVVMNVLADYAWCTGQLINQEKCSIMFGEASPPDVQESVRSVLQVGSTSFDDKYLGFPTPEGRMNKGKFQSLQEKLCKRIMQWGENFLSSGGKEILIKAVLQAITVYVMGIFKLPDSICDELTKLTRNFWWGSEKGKRKAHWKSWDCITKPKHCGGLGFRDFRLFNQALLARQAWRLIENPHSLCVQVLKAKYYPNGSLIDTSFGGNASSGWRAI 775

HSP 3 Score: 163.696 bits (413), Expect = 6.072e-149
Identity = 96/289 (33.22%), Postives = 145/289 (50.17%), Query Frame = 1

Query: 1021 WNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNR-FKFESWWLMEPNCADVIRQLWDE---KS--GDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKS 1869
            W+L+  +R+ ++  W V  DFNE ++ +E      RNE Q+++FR VL  C+L  LG++G  YT++       NI+ +LDR +A+N W  +F N  V +L    SDHCPI +            +   +E  W  EP+  +VI   W E   KS  G+    L  +   L  W +       ++++  R  L  L   D +  ++ +  D    LN  +  EE+ W QR+R NWL+EGD+NT FFHSK   R K N+I  L D +  +      ME +  DYF  LF +
Sbjct:    2 WSLINSIRQFSNLPWLVLGDFNEALWQFEHFSVRQRNETQMQSFRDVLQTCDLHALGFSGVPYTYDNRREGRNNIRVRLDRALADNDWREMFGNARVSHLTSTRSDHCPISVCFSPEDCRPFHTKCLHYEICWEREPSLQEVITDAWSEGVSKSDLGEISTALHRVMTRLHSWSKVKVKNVGKELEKARKRLTSLLVSDAESSLVRQALD---HLNELLYREEMLWLQRSRINWLKEGDRNTRFFHSKGVWRAKKNKISALRDASGTVHHLTNVMEQMATDYFKTLFSA 287

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q53LX4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g08550 PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.329e-148
Identity = 114/246 (46.34%), Postives = 151/246 (61.38%), Query Frame = 3

Query: 1881 NTNHLLSGVKKCVNEDMNRILVADYKE*EIVEALKSIGPTKAS-RPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            N + LL  V K V   MN  L+      EI +AL SIG  KA    D  PA+F+++FW  VG +I     + L  G      N   +VLIPK  +P    + +PI LC++ YKI  K++ NRL+ +L   I P Q  FVP R+ITDN+L+AYE+ H L+ KR G  GF A K  M+KAYDRVEWGFL++MM+K+GFD  WV  +M+C+ +VTY + +NG      NP  GLRQGDP+SP LF IC+
Sbjct:  860 NLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALFYKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVEWGFLEKMMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFICA 1105

HSP 2 Score: 201.06 bits (510), Expect = 5.329e-148
Identity = 122/412 (29.61%), Postives = 212/412 (51.46%), Query Frame = 1

Query:  664 TMKLLSWNVRGLGNLRTIRRFQHTLKLYKPQLVCIMETKLDHRRMKLVRRKCGFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNF--QNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDG---RNRFKFESWWLMEPNCADVIRQLW----DEKSGDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGL-EDKNEILKTEREDMETIVKDYFMELFKS 1869
             MK+++WN RGLGN  T+R   +  K   P ++ +  TK+D  +++  R K G  N +     G  GG+ + W +   + + + S   +D +V  ED+    RFTG YG PR   +  +W  LR L  T    W    DFNE+++++EK  G  + +  ++ FR+ L  C L +LG+TG  +TW R N+  ++  I+E+LDR VA++ W   F ++ V+      SDH P+++ T      +G   +  F+FE+ W  E +CA ++   W      + G     +  + A L  W ++     ++++K  +  L             +    +K  L+   +  ELYW QRA  +WL +GD+NT FFH  A++R+K N+I+ L  D  E++  E   + +++ +++ +LF +
Sbjct:  447 PMKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMPNLVVKDCQGKSGGLAVFWKKEINLRLRTVSRLFMDVDVM-EDDGFWWRFTGVYGEPRSDKKDLTWKALRTLNATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFTGDPFTW-RNNWCVRDGYIRERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIWNGGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRGGKVMDAIREVAANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQRELYWRQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSL-SLISEFYKQLFTA 855

HSP 3 Score: 158.688 bits (400), Expect = 5.329e-148
Identity = 87/224 (38.84%), Postives = 120/224 (53.57%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYR-----NLAKFN 3258
            F   AEG STLL  A E G L  IK  +  P I+HLLFADD +L  +  E      + +L  Y+ CSG+ IN EKS++ FS N  E+ +      L +      E YLGLP  +GR K     +LK+R+  +I  W  +LLS  GK+V IKA+ Q IP + MSCF L    C E+  L+  F+W + + +  +HW  W  L   K +GG  +R     +L +FN
Sbjct: 1101 FFICAEGFSTLLNAAEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSLYERCSGETINKEKSSIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTSSYLKERVWKKIQGWKEKLLSRAGKDVLIKAVAQAIPAFAMSCFNLTKGLCDEITSLICRFFWAQQERENKMHWIAWEHLCSRKEKGGFFFRRTTAGDLPEFN 1324

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q2R9J3_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g08550 PE=4 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.678e-148
Identity = 114/246 (46.34%), Postives = 151/246 (61.38%), Query Frame = 3

Query: 1881 NTNHLLSGVKKCVNEDMNRILVADYKE*EIVEALKSIGPTKAS-RPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            N + LL  V K V   MN  L+      EI +AL SIG  KA    D  PA+F+++FW  VG +I     + L  G      N   +VLIPK  +P    + +PI LC++ YKI  K++ NRL+ +L   I P Q  FVP R+ITDN+L+AYE+ H L+ KR G  GF A K  M+KAYDRVEWGFL++MM+K+GFD  WV  +M+C+ +VTY + +NG      NP  GLRQGDP+SP LF IC+
Sbjct:  837 NLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALFYKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVEWGFLEKMMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFICA 1082

HSP 2 Score: 201.445 bits (511), Expect = 7.678e-148
Identity = 122/412 (29.61%), Postives = 212/412 (51.46%), Query Frame = 1

Query:  664 TMKLLSWNVRGLGNLRTIRRFQHTLKLYKPQLVCIMETKLDHRRMKLVRRKCGFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNF--QNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDG---RNRFKFESWWLMEPNCADVIRQLW----DEKSGDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGL-EDKNEILKTEREDMETIVKDYFMELFKS 1869
             MK+++WN RGLGN  T+R   +  K   P ++ +  TK+D  +++  R K G  N +     G  GG+ + W +   + + + S   +D +V  ED+    RFTG YG PR   +  +W  LR L  T    W    DFNE+++++EK  G  + +  ++ FR+ L  C L +LG+TG  +TW R N+  ++  I+E+LDR VA++ W   F ++ V+      SDH P+++ T      +G   +  F+FE+ W  E +CA ++   W      + G     +  + A L  W ++     ++++K  +  L             +    +K  L+   +  ELYW QRA  +WL +GD+NT FFH  A++R+K N+I+ L  D  E++  E   + +++ +++ +LF +
Sbjct:  424 PMKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKMDTNKLQCFRWKLGMPNLVVKDCQGKSGGLAVFWKKEINLRLRTVSRLFMDVDVM-EDDGFWWRFTGVYGEPRSDKKDLTWKALRTLNATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFTGDPFTW-RNNWCVRDGYIRERLDRAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVTTSNEVIWNGGRSKPGFRFEAGWAREEHCAPIVENAWKLSVGPRGGKVMDAIREVAANLWDWSKNFLGDLEKRIKKAKQALEAHRRSPISSSTASREAVLKYRLDKLEEQRELYWRQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSL-SLISEFYKQLFTA 832

HSP 3 Score: 158.303 bits (399), Expect = 7.678e-148
Identity = 87/224 (38.84%), Postives = 120/224 (53.57%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYR-----NLAKFN 3258
            F   AEG STLL  A E G L  IK  +  P I+HLLFADD +L  +  E      + +L  Y+ CSG+ IN EKS++ FS N  E+ +      L +      E YLGLP  +GR K     +LK+R+  +I  W  +LLS  GK+V IKA+ Q IP + MSCF L    C E+  L+  F+W + + +  +HW  W  L   K +GG  +R     +L +FN
Sbjct: 1078 FFICAEGFSTLLNAAEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSLYERCSGETINKEKSSIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTSSYLKERVWKKIQGWKEKLLSRAGKDVLIKAVAQAIPAFAMSCFNLTKGLCDEITSLICRFFWAQQERENKMHWIAWEHLCSRKEKGGFFFRRTTAGDLPEFN 1301

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
LIN1_NYCCO	9.333e-28	29.17	LINE-1 reverse transcriptase homolog OS=Nycticebus...	[more]
LORF2_HUMAN	1.190e-26	29.91	LINE-1 retrotransposable element ORF2 protein OS=H...	[more]
M310_ARATH	3.112e-20	40.00	Uncharacterized mitochondrial protein AtMg00310 OS...	[more]
YTX2_XENLA	5.348e-17	31.34	Transposon TX1 uncharacterized 149 kDa protein OS=...	[more]
RNHX1_ARATH	5.952e-15	30.63	Putative ribonuclease H protein At1g65750 OS=Arabi...	[more]
LORF2_MOUSE	1.526e-13	27.31	LINE-1 retrotransposable element ORF2 protein OS=M...	[more]
M1250_ARATH	1.360e-12	61.29	Uncharacterized mitochondrial protein AtMg01250 OS...	[more]
PO22_POPJA	1.531e-11	26.78	Retrovirus-related Pol polyprotein from type-1 ret...	[more]
POLR_DROME	2.436e-9	27.38	Retrovirus-related Pol polyprotein from type-2 ret...	[more]
PO21_NASVI	9.828e-8	26.92	Retrovirus-related Pol polyprotein from type-1 ret...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
Q7XCU0_ORYSJ	1.024e-151	39.27	Retrotransposon protein, putative, unclassified OS...	[more]
Q2QUC2_ORYSJ	2.158e-149	45.06	Retrotransposon protein, putative, unclassified OS...	[more]
A3CI90_ORYSJ	6.072e-149	49.04	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q53LX4_ORYSJ	5.329e-148	46.34	Retrotransposon protein, putative, unclassified OS...	[more]
Q2R9J3_ORYSJ	7.678e-148	46.34	Retrotransposon protein, putative, unclassified OS...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446:SF340	REVERSE TRANSCRIPTASE-RELATED	coord: 25..166
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 25..166

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0091909 ID=g.barbadense_cottongen_reftransV1_0091909; Name=g.barbadense_cottongen_reftransV1_0091909; organism=Gossypium barbadense; type=contig; length=3433bp
CCTTATTCAATAGCGCTCAAAGCTGAATCTTCTATCAAAGGAAAAGAAAG
CATATGGCTCGGGTCCCCGAAAAAGAAAACAATGATACAGTGTAACTATA
CAGGCATGGAAGAACCGGATAGTAACAGTAAGTGCTATACAAATTCATTG
ATGCCGGAGATACAGATAGATATGAAGATGACAAAAGTTTCAAAAAAAAA
CGCAAATGTTCTGGAAGCAGGTGATGGGGAGGAAAATAACAAATTTAATG
ATGGTATTGATAGTCTTGGAAAGTGTATGACCACTGTGGAGGAAAAGTTA
CAGAAAAACCAAAGTAGCATGATAGAAAATCAAATAGATGAAGTGGAGAT
TAAAAATTATGAAGAATGGGAAGCAACGCAACAACCGAGATATGACAGAA
GCAGCTGGCGTAGATTGGACAGGAAGGAGAACTTTGATGTAAATATGTCA
GAAAAGATCTTGGGTAAAATACAAGTTTAATCACGAAGGCCTAGTTGAGA
ATGTGACATATCCCACTAATGAAAGTCCGGTTAAAAAAGCAAAGGCAAAT
AAGGATAGGGAGGATGGTTATGTCAATTCTGATTGTAAGCAGACTGTTTC
CCACGTTAGTTCGGAACTGACAAAAGTTATATTGGCGGCTGCCAATGGGC
AAGCCGACCGGAAACCATGAAACTCCTAAGTTGGAATGTCCGGGGACTGG
GGAATCTCCGGACTATTAGGAGATTTCAACACACGTTGAAACTCTACAAA
CCCCAACTAGTCTGCATAATGGAGACAAAATTGGATCATAGACGCATGAA
ACTAGTCAGGAGAAAATGTGGTTTTCAGAACGGGATAGACTTATCAGCAA
CGGGTACACGTGGTGGAATTTGCCTATCATGGAATGAAAATTACTTGGTT
AATGTTCTTAGTTATTCAGAATCTCATGTTGATGCTGAAGTCTCTGATGA
AGATAACTCAAACAAATAGAGGTTCACCGGATTTTATGGGAATCCACGAG
TCTCAGATAGGTAGGAATCTTGGAATCTTCTTCGAAGGCTACGAGAAACA
AATTCAGGAGCATGGTGTGTATGCAGTGATTTCAACGAGATTATGTATGC
TTATGAAAAAACAGGAGGCGCAACAAGAAATGAAAGGCAGATAGAGGCTT
TTCGAAAGGTCTTAACAGATTGTGAATTAGTTGATTTGGGTTATACGGGC
CAGAAGTACACATGGGAGAGAGGCAATTTCCAGAACACAAATATTCAAGA
ACAGCTAGACCGGGGAGTGGCAAATAATGCTTGGCTCAACTTGTTTAGTA
ATTACGAGGTACAAAATCTTCCACATTTATTCTCTGACCATTGTCCGATT
CTAATCAAAACAGAGATAAATAGTGCACATGATGGGAGAAACCGCTTTAA
GTTTGAGTCTTGGTGGCTTATGGAACCAAATTGTGCTGATGTTATTAGGC
AACTATGGGATGAGAAATCAGGTGATGCTTTTGCTAAATTGGAAAATCTT
CGAGCTGGCCTACAAAAATGGAGACGCAGTATCAAGTACATAAAAGATAG
GAAAATGAAGAACCTTCGAGATTGACTGGTTCAACTTGATAGTATGGATC
GGGACGACGATGTGATAGCAGAAATCTTTGATGTAAAGCTGGAGCTTAAT
TGGGAAATGAAAAATGAGGAATTGTATTGGGAACAACGGGCCAGAGCCAA
TTGGTTGCGTGAGGGTGATAAAAATACAATGTTTTTTCATAGTAAAGCCA
CGCAAAGACAGAAGATGAATCGTATCCGGGGATTAGAAGACAAGAATGAA
ATCCTTAAGACAGAAAGAGAGGATATGGAGACCATCGTTAAAGATTATTT
TATGGAGCTCTTTAAATCAAAAGGGTTGGCAACACAAACCATCTCTTATC
AGGGGTTAAAAAATGTGTCAATGAGGATATGAATCGAATATTAGTAGCAG
ATTATAAGGAGTAAGAGATAGTTGAAGCGCTTAAGAGTATAGGGCCGACA
AAAGCCTCTAGGCCTGATGACTTCCCAGCTATTTTCTTTCAGAAATTTTG
GTTTATTGTGGGCAAGGAGATTTGTGAGTTTTGCTTAGAAGTCCTAAATA
AAGGTATGTCTTTGCAACCTTTAAACCATATGAATATAGTATTAATTCCA
AAATCGGCTCACCCGAATAGCCCCATAAATTTTAAACCTATCTGCCTATG
TTCGATGTTTTACAAAATAATCTAAAAAATGATAGTAAATAGACTCCAAA
AGGTTCTTGATTCTTGTATTGATCCAGCCCAAAGTGTGTTTGTCCCTGGA
AGGCTTATTACTGATAATGTTCTCATTGCATACGAAATCTTACATACTCT
CCGGAACAAAAGAGTGGGAAAAAAAGGGTTCATGGCCTCTAAGATTGATA
TGACTAAGGCATACGATAGGGTGGAATGGGGGTTTCTGAAACAAATGATG
ATTAAGATGGGTTTTGATGAAGAATGGGTTGCGAGAATTATGCAGTGTAT
TAATACGGTCACATATTCGGTGATTTTAAATGGCGTCCCAGGAATGGTAT
TTAACCCTGAAAGAGGACTACGCCAAGGCGATCCACTTAGCCCTTTGTTA
TTTCTCATATGTAGCGGAAGGACTTTCTACACTACTAAGGCTAGCAGCTG
AGGAAGGAAGACTAAAAGGGATCAAAGCAAGCAGACGAGGACCTCAGATC
TCTCACTTGTTATTTGCTGATGATTGCATTCTATTTGGGGAAGCAACAGA
GAGAGGAATTACAACATTTGAACAAATCCTACAAGAGTACCAGGAATGTT
CCGGTCAATGCATTAATTATGAAAAATCAGCGATGTTTTTCAGCTCAAAT
ACTTTAGAGATAGTTCGAGCGAATATATCAAACCGACTGGGAGTTAAAAG
GTCCAATAACTGTGAAAACTACTTGGGTTTACCAAATATGGTGGGCCGAA
GAAAACGTGGGGCTTTTCAACATTTAAAAGACCGTATAAAGATGAGAATA
GACAATTGGAGTACTCGTTTGTTATCTTAAGGAGGGAAAGAGGTGTTCAT
TAAAGCTATTTTACAGCCAATTCCCACATACACAATGTCCTGTTTCTTAT
TACCAATGACTACGTGCTACGAAATGGAACAATTGATGGCCAACTTCTGG
TGGCAAAAGGGGAAAGGTAAACGCGGAATTCATTGGTGCCCTTGGTACAC
ATTATGAAAATTAAAATATGAGGGTGGACTTGGTTATCGTAATTTAGCTA
AATTCAATTTGGCCCTCCTTGTAAAATAAGGGTGGACATTAATTGATAAC
CTGACGTCCCTTTTGGCGAGAACATTAAAAGAAAAGTATTATCAAAACTC
TGATTTCTTAAGGTCGGAGTTAGGAAACTCACCATCATATACTTGGAAAA
GTATATGGGCAGCCAAAAGGCTACTGCTCTCAG

Search form

g.barbadense_cottongen_reftransV1_0091909, g.barbadense_cottongen_reftransV1_0091909 (contig) Gossypium barbadense

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