g.barbadense_cottongen_reftransV1_0091909, g.barbadense_cottongen_reftransV1_0091909 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0091909
Unique Name	g.barbadense_cottongen_reftransV1_0091909
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3433

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.333e-28
Identity = 63/216 (29.17%), Postives = 106/216 (49.07%), Query Frame = 3

Query: 1965 EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPK-SAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLI 2609
            EI   ++++   K+  PD F + F+Q F   +   +      +  +G+        NI LIPK    P    N++PI L ++  KI+ K++ NR+Q+ +   I   Q  F+PG     N+  +  ++  +   ++  K  M   ID  KA+D ++  F+ + + K+G +  ++  I    +  T ++ILNGV    F    G RQG PLSPLLF I
Sbjct:  456 EIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHIN--KLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLLFNI 669

HSP 2 Score: 58.5362 bits (140), Expect = 9.333e-28
Identity = 49/197 (24.87%), Postives = 87/197 (44.16%), Query Frame = 1

Query: 2587 LALCYFSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLG--LPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLL--PMTTCYEMEQLMANFWWQKGK 3165
            L+   F+ V E L+  +R   EE  +KGI       ++S  LFADD I++ E T    T   ++++EY   SG  IN  KS  F  +N  +     + + +          YLG  L   V    +  ++ L+  I   ++ W     S  G+   +K  + P   Y  +   +  P++   ++E+++ +F W + K
Sbjct:  662 LSPLLFNIVMEVLAIAIR---EEKAIKGIHIGSEEIKLS--LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQ-AEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQKK 852

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.190e-26
Identity = 70/234 (29.91%), Postives = 117/234 (50.00%), Query Frame = 3

Query: 1923 EDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLN----KGMSLQPLNHMNIVLIPKSAHPNSPI-NFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLI 2609
            E +NR +       EIV  + S+   K+  PD F A F+Q++     +E+  F L++      +G+        +I+LIPK     +   NF+PI L ++  KI+ K++ NR+Q+ +   I   Q  F+PG     N+  +  ++  +   R   K  +   ID  KA+D+++  F+ + + K+G D  ++  I    +  T ++ILNG     F  + G RQG PLSPLLF I
Sbjct:  447 ESLNRPITGS----EIVAIINSLPTKKSPGPDGFTAEFYQRY----KEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHIN--RAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNI 670

HSP 2 Score: 50.0618 bits (118), Expect = 1.190e-26
Identity = 50/199 (25.13%), Postives = 86/199 (43.22%), Query Frame = 1

Query: 2587 LALCYFSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLG--LPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFL--LPMTTCYEMEQLMANFWWQKGKGK 3171
            L+   F+ V E L+  +R   +E  +KGI+  +   ++S  LFADD I++ E          +++  + + SG  IN +KS  F  +N  +   + I   L    ++    YLG  L   V    +  ++ L   IK   + W     S  G+   +K  + P   Y  +     LPMT   E+E+    F W + + +
Sbjct:  663 LSPLLFNIVLEVLARAIR---QEKEIKGIQLGKEEVKLS--LFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYNNNRQ-TESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAR 855

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.112e-20
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1

Query: 3070 IPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYE-GGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIWAAKRLL 3426
            +P Y MSCF L    C ++   M  FWW   + KR I W  W  L K K + GGLG+R+L  FN ALL K  + +I    +LL+R L+ +Y+ +S  +   +G  PSY W+SI   + LL
Sbjct:    3 LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELL 122

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.348e-17
Identity = 68/217 (31.34%), Postives = 100/217 (46.08%), Query Frame = 3

Query: 1965 EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVG-KKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLIC 2612
            E+ +AL+ +   K+   D     FFQ FW  +G +      E   KG          + L+PK        N++P+ L S  YKI+ K I  RL+ VL   I P QS  VPGR I DNV +  ++LH  R  R G    F++  +D  KA+DRV+  +L   +    F  ++V  +     +    V +N          RG+RQG PLS  L+ + 
Sbjct:  453 ELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFAR--RTGLSLAFLS--LDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLA 665

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.952e-15
Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = 1

Query: 2929 LPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIW 3408
            +P +  R  +  F  + +R+  R+  W  + LS  G+    KA+L  +P ++MS  LLP +    ++QL   F W     K+  H   W  +   K EGGLG R     N AL+ K GW L+    SL    L++KY+     +R      P  +W S W
Sbjct:    1 MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGE--IRDSRWLIPKGSWSSTW 158

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.526e-13
Identity = 59/216 (27.31%), Postives = 104/216 (48.15%), Query Frame = 3

Query: 1965 EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPK-SAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLI 2609
            EI   + S+   K+  PD F A F+Q F   +   + +   ++  +G          I LIPK    P    NF+PI L ++  KI+ K++ NR+Q+ + + I P Q  F+PG     N+  +  ++H +   ++  K  M   +D  KA+D+++  F+ +++ + G    ++  I    +    ++ +NG        + G RQG PLSP LF I
Sbjct:  464 EIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYIN--KLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLSPYLFNI 677

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.360e-12
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 3

Query: 2523 ILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            I+NG P  +  P RGLRQGDPLSP LF++C+
Sbjct:   13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCT 43

HSP 2 Score: 48.1358 bits (113), Expect = 1.360e-12
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADD 2724
            F    E LS L R A E+GRL GI+ S   P+I+HLLFADD
Sbjct:   39 FILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFADD 79

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: PO22_POPJA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.531e-11
Identity = 49/183 (26.78%), Postives = 89/183 (48.63%), Query Frame = 3

Query: 2100 KGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVF--VPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNP---ERGLRQGDPLSPLLF------LICS 2615
            +G    P   M   LIPK     +P N++PI + S   +++ +++  RL+  ++  + PAQ  +  + G L+   +L  Y     + ++R  +K +    +D+ KA+D V    + + + ++G DE     I   ++  T ++ +   PG         RG++QGDPLSP LF      L+CS
Sbjct:   49 RGHVPTPWTAMRTTLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVE--LHPAQKGYARIDGTLVNSLLLDTY-----ISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVG--PGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCS 222

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: POLR_DROME (Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.436e-9
Identity = 46/168 (27.38%), Postives = 77/168 (45.83%), Query Frame = 3

Query: 2139 VLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMA---SKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICSGRTFYT 2633
            V IPK+     P +F+PI + S+  + +  ++  RL   ++   DP Q  F+P     DN  I   +L      R   K F +   + +D++KA+D +    +   +   G  + +V  +         S+  +G     F P RG++QGDPLSP+LF +   R   T
Sbjct:  401 VFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRLNSSIN--WDPRQRGFLPTDGCADNATIVDLVL------RHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRT 560

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Match: PO21_NASVI (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis PE=3 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 9.828e-8
Identity = 42/156 (26.92%), Postives = 71/156 (45.51%), Query Frame = 3

Query: 2136 IVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLF 2603
             VLIPK      P  F+P+ + S+  +   +++ NR+ +     +D  Q  F+    + +N  +   ++   +  R+  KG   + +D+ KA+D VE   +   + +     E    IM         + +    G    P RG+RQGDPLSPLLF
Sbjct:  374 TVLIPKEPGTMDPACFRPLSIASVALRHFHRILANRIGE--HGLLDTRQRAFIVADGVAENTSLLSAMI---KEARMKIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLF 524

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: S8C3P3_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_13371 PE=4 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 7.869e-163
Identity = 120/277 (43.32%), Postives = 163/277 (58.84%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIWAAKRLLLS 3432
            F   ++ LS LL    +     G + S   P+ISHLLFADD ++F  AT   +   + +L  Y   SGQ IN EKS +   S         +S  +GV  +     YLGLP+MVG  K+ AF++LKDRI  RI +W T+ LS  GK V IK++LQ IP Y+M CF LP +   E+  L+++FWW   +GK  +H   W  L +    GGLG+RNLA FN ALL K  W ++    SLLA+ LK KYY+N+ FL + LG SPS+TW+S+  A+ LL+S
Sbjct:  540 FILCSDTLSRLLHAECDRNSEIGFQLSPTTPKISHLLFADDTLIFSSATLAAMRGIDGVLSSYAAVSGQMINLEKSVLVIPSEPDAQYTHLLSEAVGVPLTETLGRYLGLPSMVGLSKKAAFRNLKDRIHSRILHWHTKFLSKAGKMVLIKSVLQAIPAYSMQCFKLPASLIAELNGLLSSFWWDD-RGKPKMHLLAWDKLCRATVHGGLGFRNLAIFNKALLAKQCWRILMKPDSLLAQLLKGKYYRNTSFLCASLGRSPSFTWRSLLTARELLVS 815

HSP 2 Score: 209.92 bits (533), Expect = 7.869e-163
Identity = 97/243 (39.92%), Postives = 152/243 (62.55%), Query Frame = 3

Query: 1887 NHLLSGVKKCVNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            +  L+ + + V + M  +L   Y   E+  A++++ P  +  PD  P +F+QK+W  VG       L +LN G     +NH  IVLIPK + P  P +++PI L ++ YKI  KM+  R++ +++  I   Q+ F+ GR ITDN+L+AYE+ H+++  R G+  + A K+D++KA+DR+EW FL++++   GF    +  IM C+ TVTYSV++NGVP     P RG+RQGDPLSP LF++CS
Sbjct:  302 DRTLAVIPRTVTDSMRSVLERPYTAAEVWPAIRNMKPLSSPGPDGLPPLFYQKYWSTVGPATVRAVLHLLNHGSMESRMNHSFIVLIPKVSDPQEPAHYRPISLSNVVYKIASKMVATRIKPIMEKIISKEQAAFLSGRSITDNILMAYELNHSIKTSRRGEPRYGALKLDVSKAFDRIEWTFLEKVLRCHGFPSSTIRTIMLCVTTVTYSVMINGVPEGNIIPTRGIRQGDPLSPYLFILCS 544

HSP 3 Score: 195.282 bits (495), Expect = 7.869e-163
Identity = 111/293 (37.88%), Postives = 160/293 (54.61%), Query Frame = 1

Query: 1009 R*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEIN---SAHDGRNRFKFESWWLMEPNCADVIRQLWD-EKSGDAF-AKLENLRAGLQKW-RRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKS 1869
            R  SWNLLR+LR  ++  W V  DFNE+M   E      R + Q+++FR  L+DCEL DLGY G  +TW         ++ +LDR +A   W  L+    V++L H  SDH PILI  + N   S+   R RF+FE++W   P C +VI+Q W    + D    +++N R  L KW +  +  IK R ++ L   L  L  +   D   A    +K E     K EELYW+QR +A+WLR GD+NT FFH+ AT+++  NRI+G+++ +    T   D+ +    YF  LF S
Sbjct:    2 RSSSWNLLRQLRLHSTQPWIVAGDFNEVMIQSEVDSSHLRPQAQMQSFRLTLSDCELHDLGYDGFPFTWCNNRKAPDTVRARLDRAIATQPWSQLYPKAVVKHLSHGSSDHLPILIVLDPNTLPSSRPLRKRFRFEAFWASIPGCEEVIKQTWPLPHTPDTLNRRIQNTRISLLKWYQDKVGPIKTR-LRRLAQELDALSKLSITDATQASERHLKDEQESLWKQEELYWKQRGKAHWLRCGDRNTAFFHASATEKRTQNRIKGIKNLHGHWVTLVSDVRSTFLSYFQHLFAS 293

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: M5WDR3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020995mg PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.854e-160
Identity = 118/275 (42.91%), Postives = 164/275 (59.64%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIWAAKRLL 3426
            F   AE LS+L+  A     L G+   R  P +SHL F DD  LF  A ++       I Q+Y+   GQ I+ EKS + FS+N     + N++  L VKR +  + YLGLP  VGR +R  F  LK+RI  +I  W  +LLS  GKE+ +K + Q +P Y M+CFL+P   C E++Q+MA +WW +  G+R IHW  W  L   K EGGLG+RNL  FN+ALL K  W LI    SL+AR LK +Y++N   L +++G+SPSY W+S+  A+ L+
Sbjct:  893 FLLCAEALSSLILQAERRNLLHGVNLCRGAPSVSHLFFTDDRFLFLRANQQDCEQLSIIFQKYEMVLGQKIHLEKSCVSFSNNMDRTDQDNLAAVLEVKRVDQHDVYLGLPTHVGRSRRQCFNSLKERIWKKIQGWKAKLLSFAGKEILLKVVAQVVPIYMMNCFLIPKCLCDEIQQVMARYWWGEQDGQRKIHWLSWNKLCLPKQEGGLGFRNLYAFNMALLAKQLWRLIQTPNSLVARILKARYFKNCSILEAQIGHSPSYIWQSLCKARVLI 1167

HSP 2 Score: 203.371 bits (516), Expect = 1.854e-160
Identity = 126/355 (35.49%), Postives = 176/355 (49.58%), Query Frame = 1

Query:  862 GGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNRFKFESWWLMEPNCADVIRQLWDEKS-GDA-FAKLENLRAGLQK---WRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKSKGLATQTISYQGLK 1911
            GG+CL W E  +V   S+  +H+D EV       K RFTG YG P  ++R  SW+LLRRL  TN   W  C DFNEI+ A EK GG  R E Q+  FR+ +  C   DLGYTG KYTW R N     I  +LDR +A   W + F   +V +L    SDH P+            +  F+FE  W    NC   I+  W   S G A F   E L+    +   W +        ++K  ++ L +L         +     +  +L+  M   E+YW QR+RA WL+ GD+N+ FFH KA+ R++ N I  LED++   +T  + +   V +YF  LF S G +  T    G++
Sbjct:  347 GGLCLMWTEELVVTARSFGTNHIDTEVEILGVRGKWRFTGIYGCPVTAERHRSWDLLRRLGATNYLPWLCCGDFNEILRADEKLGGRRRREGQMLGFRQAIDTCGFKDLGYTGPKYTWWRNNPMEIRI--RLDRALATADWCSRFLGTKVIHLNPTKSDHLPL------------KKLFRFEEMWAEHVNCMQTIQDGWQRTSRGSAPFTTTEKLKCTCHQLLGWSKCNFGHLPNQIKITQEKLGELLDAPPSHHTVELRNVLTKQLDSLMAKNEVYWRQRSRATWLKAGDRNSKFFHYKASSRRRRNTISALEDEHGHWQTTEQGLTQTVVNYFQHLFSSTGSSEYTGVVDGVR 687

HSP 3 Score: 183.726 bits (465), Expect = 1.854e-160
Identity = 95/241 (39.42%), Postives = 141/241 (58.51%), Query Frame = 3

Query: 1893 LLSGVKKCVNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            ++ GV+  V E+MN+ L+A++   EI  AL  + P+KA  PD F   F+QK+W IVG+++    L     G  L+ +N  ++ LIPK   P + +  + I L ++ YKI  K++  RL+ +L + I   QS FVPGR I+DN ++A+E+LH +  K  G++G++A KIDM+KAYDR                         C+  V+YS +LNG P     P+RGLRQGDPLSP LFL+C+
Sbjct:  682 VVDGVRGRVTEEMNQTLLAEFTPEEIKIALFQMHPSKAPGPDGFSPFFYQKYWQIVGEDVVAAVLHFFKTGKLLKKINFTHVALIPKVHEPKNMMQLRLISLFNVLYKIGAKVLATRLKAILPTLISDTQSAFVPGRAISDNSIVAFELLHMMHKKNHGRQGYLALKIDMSKAYDR-------------------------CVTRVSYSFMLNGNPVGYVIPQRGLRQGDPLSPYLFLLCA 897

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q2QXH7_ORYSJ (Os12g0156200 protein OS=Oryza sativa subsp. japonica GN=LOC_Os12g06010 PE=4 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.501e-159
Identity = 119/349 (34.10%), Postives = 187/349 (53.58%), Query Frame = 1

Query:  841 LSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNR-FKFESWWLMEPNCADVIRQLW---DEKS--GDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKS 1869
            +S+ G  GG+ L W+E+  V+V   ++ ++DA V       +   T  YG PRV +R   W+LLR + +++S  W V  DFNE M+ +E      R E Q++ FR VL DCEL DLG+ G  +T++       N++ +LDR VA++ W +++S  +V +L    SDHCPIL+   +   H  R +   +E  W  EP    VI + W    EK+  GD    L  +   L+ W R+      R+++  R  L +L   + D  VI    D    +N  +  EE+ W QR+R NWL++ D+NT FFHS+A  R K N+I  L D NE + +    +E++  +YF +++ +
Sbjct:  185 VSSEGMSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWHVTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIESNADRTVIRNATD---HMNELLYREEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTA 530

HSP 2 Score: 204.527 bits (519), Expect = 1.501e-159
Identity = 108/268 (40.30%), Postives = 146/268 (54.48%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSI 3405
            F +VA+GLS LL+    +  L   K  R  P ISHLLFADD +LF +A +R     +++L  Y   +GQ IN  K ++     +   V   IS  L V+R    + YLG P   GR  +G FQ L+ +I  R+  W    LS GGKEV IKA++Q IP Y M  F LP +   ++ +L  NFWW    G+R  HW  W +L K K  GGLG+R+   FN ALL +  W LI    SL AR LK KY+ +   + +  G++ S  W+SI
Sbjct:  775 FLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSI 1042

HSP 3 Score: 202.986 bits (515), Expect = 1.501e-159
Identity = 100/237 (42.19%), Postives = 141/237 (59.49%), Query Frame = 3

Query: 1905 VKKCVNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            +++ V + MN  L  D+ E EI +A+  IGP K+  PD FPA F+Q+ W  +  +I          G+  + +N   IVLIPK   P    +F+PI LC++ YK++ K +VNRL+ +LD  +   QS FV GR+ITDN L+A+E  H ++  +       A K+D++KAYDRV+W FL+  M K+GF   WV  IM+C+ +V Y V  NG     F P RGLRQGDPL P LFL  +
Sbjct:  543 IQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVA 779

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q2QWF4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g09530 PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.537e-159
Identity = 110/275 (40.00%), Postives = 159/275 (57.82%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIWAAKRLL 3426
            F +VA+GLST+L  A   G L  +K  R+ P ISHLLFADD +LF +A     T  ++ L  Y+ C+ Q ++  K +M F  +  +  +  I + L V++++  + YLGLP   GR K   FQ +K+R   R+ +W+ + L  GGKEV IK+++Q +PTY MS F LP + C E  QL+  FWW + + +R +HW  W  L K K  GG+G++++  FN ALL +  W L+    SL AR LK KYY N D L +   +  S +WK I     LL
Sbjct:  761 FLFVADGLSTILSSAVRTGDLVPLKVCRQAPGISHLLFADDSLLFFKANVEQATVVKEALNLYERCTSQLLSPAKCSMLFGKHCSDQTQPGIKSLLDVQQNSFEDKYLGLPTPEGRMKADRFQSIKERFFKRLIDWAEKHLPMGGKEVLIKSVIQALPTYMMSVFKLPPSFCEEYMQLVRKFWWGEDRSQRKVHWASWQQLIKPKSMGGMGFKDMKIFNQALLARQAWRLVQFPDSLCARVLKAKYYPNGDLLDTAFSSVSSDSWKGIVHGLELL 1035

HSP 2 Score: 206.068 bits (523), Expect = 2.537e-159
Identity = 99/233 (42.49%), Postives = 143/233 (61.37%), Query Frame = 3

Query: 1917 VNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            V E MN  L   + + EI +AL  IGP KA  PD FPA FFQ+ W ++  ++C+      ++ +  + +N   IVLIPK        +F+PI LC++ YK++ K +VN L+ +L+S I   QS F+PGR+ITDN LIA+E  H +   +   + F A K+D+ KAYDRV+W +L+ ++ +MGF   W+  +M C+ +V Y+V  NG     F P RGLRQGDPLSP LFL  +
Sbjct:  533 VTEQMNEDLCKAFSDKEISDALFQIGPIKAPGPDGFPARFFQRNWEVLKNDVCKAVKLFFDQKVMPEGVNTTAIVLIPKKKESKELKDFRPISLCNVIYKVVAKCLVNHLRPILESIISQEQSAFIPGRMITDNALIAFECFHNIAQSKRESQEFCAYKLDLAKAYDRVDWQYLEGVLDRMGFSNTWIQWMMACVTSVRYAVRFNGSMLKSFQPSRGLRQGDPLSPYLFLFVA 765

HSP 3 Score: 196.823 bits (499), Expect = 2.537e-159
Identity = 110/354 (31.07%), Postives = 191/354 (53.95%), Query Frame = 1

Query:  841 LSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNR-FKFESWWLMEPNCADVIRQLWDEKS-----GDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKSKGLAT 1884
            +   G+ GG+ L W+E++ +++LSY+  H+D  V ++ ++ + R T  YG P+  +R   W LLRR++  ++  WC+  DFNE M+ +E      R E+Q+  FR++L+ C++ DLG+ G  +T++       N++ +LDR VA+ +W  L+   +V++L    SDHCPIL++   +   D  +R  ++E  W  E + ++ IR  W++       G   +KL+ +   LQ W R      ++++  LR  + +L    R      E       +   +  EE+ W QR+R  WLREGD+NT  FH KA  R + N+I  L   +     +R++MET+  ++F +L+    L T
Sbjct:  170 VDGVGSGGGLALFWDESFHLDLLSYTNRHIDVLVKEDRSAMQWRCTFVYGEPKAHERHNMWTLLRRIKPNSTAPWCLMGDFNEAMWQFEHFSEHKRKEKQMLDFREILSHCDVFDLGFIGTPWTYDNKRKGGYNVRVRLDRAVASQSWSVLYPQAQVRHLVSSRSDHCPILVQCTPDEDKDKPSRCMRYEILWEREESLSEEIRTAWEQHHAATDLGSVSSKLKLVMGALQHWSREKFGSVNKELGALRKKMEELQLGGRHTH-DQEYQSCSRRMEEILYREEMMWLQRSRVAWLREGDRNTS-FHRKAAWRHRKNKISKLFLPDGSWTDQRKEMETMATNFFKDLYTKDPLVT 521

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BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q7X970_ORYSJ (BZIP-like protein OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.959e-159
Identity = 119/349 (34.10%), Postives = 187/349 (53.58%), Query Frame = 1

Query:  841 LSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNR-FKFESWWLMEPNCADVIRQLW---DEKS--GDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKS 1869
            +S+ G  GG+ L W+E+  V+V   ++ ++DA V       +   T  YG PRV +R   W+LLR + +++S  W V  DFNE M+ +E      R E Q++ FR VL DCEL DLG+ G  +T++       N++ +LDR VA++ W +++S  +V +L    SDHCPIL+   +   H  R +   +E  W  EP    VI + W    EK+  GD    L  +   L+ W R+      R+++  R  L +L   + D  VI    D    +N  +  EE+ W QR+R NWL++ D+NT FFHS+A  R K N+I  L D NE + +    +E++  +YF +++ +
Sbjct:  788 VSSEGMSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWHVTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIESNADRTVIRNATD---HMNELLYREEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTA 1133

HSP 2 Score: 204.142 bits (518), Expect = 3.959e-159
Identity = 108/268 (40.30%), Postives = 146/268 (54.48%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSI 3405
            F +VA+GLS LL+    +  L   K  R  P ISHLLFADD +LF +A +R     +++L  Y   +GQ IN  K ++     +   V   IS  L V+R    + YLG P   GR  +G FQ L+ +I  R+  W    LS GGKEV IKA++Q IP Y M  F LP +   ++ +L  NFWW    G+R  HW  W +L K K  GGLG+R+   FN ALL +  W LI    SL AR LK KY+ +   + +  G++ S  W+SI
Sbjct: 1378 FLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSI 1645

HSP 3 Score: 202.601 bits (514), Expect = 3.959e-159
Identity = 100/237 (42.19%), Postives = 141/237 (59.49%), Query Frame = 3

Query: 1905 VKKCVNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            +++ V + MN  L  D+ E EI +A+  IGP K+  PD FPA F+Q+ W  +  +I          G+  + +N   IVLIPK   P    +F+PI LC++ YK++ K +VNRL+ +LD  +   QS FV GR+ITDN L+A+E  H ++  +       A K+D++KAYDRV+W FL+  M K+GF   WV  IM+C+ +V Y V  NG     F P RGLRQGDPL P LFL  +
Sbjct: 1146 IQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVA 1382

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q9FW98_ORYSJ (Putative non-LTR retroelement reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0026L12.31 PE=4 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.101e-158
Identity = 108/275 (39.27%), Postives = 155/275 (56.36%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSIWAAKRLL 3426
            F    EGLS LL      G L+GIK  R GP ISHLLFADD I F +A  R +   +  L+ Y   SGQ IN  KS++FF     + V+ ++ + L V      ++YLG+P  +G      F+ L +RI  R++ W+ R LS  G E  +KA+ Q IP Y MSCF +P++ C +M+  +A+ WW    GK+ +HW  W  L   K+ GG+G+R    FN A+L +  W L+ +  SL +R LK +Y+ NS F  +    SPS+TW+S+   + LL
Sbjct:  659 FLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAGMETMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELL 933

HSP 2 Score: 201.83 bits (512), Expect = 1.101e-158
Identity = 131/418 (31.34%), Postives = 213/418 (50.96%), Query Frame = 1

Query:  661 ETMKLLSW--NVRGLGNLRTIRRFQHTLKLYKPQLVCIMETKLDHRRMKLVRRKCGFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNR------FKFESWWLMEPNCADVIRQLWDEKSG------DAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKSK 1872
            E  KL++W  N RGLG+  T+   +  +K  +P LV + ETK+  ++ + +    GF     +S  G  GG+ L W   Y V++  ++   +D  VS E+     R +  YG P+   R   WNLLRRL +   G W  C DFNE++   E  G   R+E  ++ FR  L DC L+DLG+ G K+TW      N+N + +LDR VAN  +   F +  V+N+    SDH  I I  +++  + G+ R      F+FE+ WL   +  +V+   W   S         ++ L+ +   L+ W ++      RK+  +   L  L     +D VI E   ++ +L    + EE+   QR+R +WLREGD+NT FFH++A+ R++ NRI+ L   +      +E ++ + + ++  LF S+
Sbjct:    2 EPNKLVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVSCEGLSGGLALFWTTAYTVSLRGFNSHFIDVLVSTEELP-PWRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGPKFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISI--DLSRRNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSE 416

HSP 3 Score: 197.978 bits (502), Expect = 1.101e-158
Identity = 105/242 (43.39%), Postives = 146/242 (60.33%), Query Frame = 3

Query: 1890 HLLSGVKKCVNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
             +L  +   V + +N  L   Y   EI  AL  +G TKA  PD FPA+F+Q  W I+ + IC      L      + L    +VLIPK  + +    F+PI LC++ YKI  K++ NRL+  L   +   QS FVPGRLITD+ L+AYE LHT+R K+  K  F A KIDM KAYDRVEW +L   + K+GF ++W+  +M+C+++V Y+V +NG       P RG+RQGDP+SP LFL+C+
Sbjct:  423 EVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIR-KQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCT 663

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: B9FC76_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_15963 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 6.692e-154
Identity = 109/268 (40.67%), Postives = 157/268 (58.58%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSI 3405
            F ++A+GLS +L+   +E +++ +K  R  P +SHLLFADD +LF +A     T  ++ L  Y+ C+GQ IN ++ ++ FS+   +  +  I   L V+R+   +  LGLP   GR K   FQ +K+R + R+ +WS R LS  GKE  IK++ Q +PTYTM  F +P   C E EQL+ NFWW   KG++ +HW  W  L   K  GGLG+R++  FN ALL +  W LI++  SL AR LK KYY N     +   +  S TWK I
Sbjct:  896 FLFIADGLSNILQRRRDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSLAGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGEKKVHWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSSPTWKGI 1163

HSP 2 Score: 207.223 bits (526), Expect = 6.692e-154
Identity = 104/242 (42.98%), Postives = 149/242 (61.57%), Query Frame = 3

Query: 1881 NTNHLLSGVKKCVNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFL 2606
            N   LL+  +  + ++MN +L   + + EI +AL  IGP KA  PD FPA FFQ+ W ++ +++ E   E    G   + +N   IV+IPK+  P    +F+P+ LC++ YK++ K +VNRL+ +L   I   QS FVPGR+ITDN L+A+E  H++       + F A K+D++KAYDRV+WGFL   + K+GF   W   IM C+ +V YSV LNG     F P RGLR+GDPL+P LFL
Sbjct:  656 NPGELLNMFEPKITDEMNGMLTKPFTDEEISDALFQIGPLKAPGPDGFPARFFQRNWGVLKRDVIEGVREFFETGEWKEGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQSAFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGFGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFL 897

HSP 3 Score: 181.8 bits (460), Expect = 6.692e-154
Identity = 115/402 (28.61%), Postives = 211/402 (52.49%), Query Frame = 1

Query:  685 NVRGLGNLRTIRRFQHTLKLYKPQLVCIMETKLDHRRMKLVRRKCGFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTG--FYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNRFK-FESWWLMEPNCADVIRQLWDEKS-----GDAFAKLENLRAGLQKWRRS-IKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELF 1863
            +V    +L  ++     ++ +  ++V + ET+ D   +  ++ + G +    ++  G  GG+ L W+E+  V + SY+  H+D  +++ + +   R+T    YG P+  +R E WNLLRR+R   S  W +  DFNE M+  E       +ERQ+  FR+VL +C+L D+G+ G  +T++       N++ +LDR VA+  W  +F    + +L    SDH P+L++   N     R++   FE+ W    +   +  + WD+       GD   KL      L++W R  I  IK + ++  R  L ++    R+D    ++  +K+ L   +  EE++W+QR+R  WL+EGD+NT +FH KA+ R + N I+ L   + ++ ++ E++  I + +F +L+
Sbjct:  253 DVDETRSLEEVQDLVCMVQTHSSKIVFLSETRQDQFYVSNLKWRLGLRRCFVVNGVGKGGGLALFWDESLKVELKSYNMRHIDVIITEPEGA---RWTATFVYGEPKAQNRHEMWNLLRRIRLNASDPWLMIGDFNEAMWQIEHRSRVKHSERQMRDFREVLVECDLQDIGFQGVPWTYDNNQASPNNVKVRLDRAVASPVWRAMFDQANIMHLTTACSDHVPLLLEKGGNMQQRRRSKINCFEAVWERVKSFNSIEHESWDDGGLAKNLGDVRTKLAYTMENLKRWSRDKIGNIK-KSIERCRRELEEMRMRGREDSE-PDVHRLKIFLQELLHREEIWWKQRSRITWLKEGDRNTRYFHLKASWRARKNLIKKLRRSDGMMCSKEEELGEIARSFFRDLY 649

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: B8BN96_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37529 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.761e-152
Identity = 126/378 (33.33%), Postives = 201/378 (53.17%), Query Frame = 1

Query:  754 QLVCIMETKLDHRRMKLVRRKCGFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWERGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNR-FKFESWWLMEPNCADVIRQLW---DEKS--GDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKS 1869
            +LV + ET+    +M  +R + G +    +S+ G  GG+ L W+E+  V+V   ++ ++DA V       +   T  YG PRV +R   W+LLR + +++S  W V  DFNE M+ +E      R E Q++ FR VL DCEL DLG+ G  +T++       N++ +LDR VA++ W +++S  +V +L    SDHCPIL+   +   H  R +   +E  W  EP    VI + W    EK+  GD    L  +   L+ W R+      R+++  R  L +L   + D  VI    D    +N  +  EE+ W QR+R NWL++ D+NT FFHS+A  R K N+I  L D NE + +    +E++  +YF +++ +
Sbjct:  500 RLVFLCETRQSVEKMSRLRGRLGLRGFTGVSSEGMSGGLALYWDESVSVDVKDINKRYIDAYVQLSPEEPQWHVTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDFRDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPCSDHCPILLNLVVKDPHQLRQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKALAKVMTALRSWSRAKVKNVGRELEKARKKLAELIESNADRTVIRNATD---HMNELLYREEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDVYTA 874

HSP 2 Score: 202.986 bits (515), Expect = 1.761e-152
Identity = 100/237 (42.19%), Postives = 141/237 (59.49%), Query Frame = 3

Query: 1905 VKKCVNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTVTYSVILNGVPGMVFNPERGLRQGDPLSPLLFLICS 2615
            +++ V + MN  L  D+ E EI +A+  IGP K+  PD FPA F+Q+ W  +  +I          G+  + +N   IVLIPK   P    +F+PI LC++ YK++ K +VNRL+ +LD  +   QS FV GR+ITDN L+A+E  H ++  +       A K+D++KAYDRV+W FL+  M K+GF   WV  IM+C+ +V Y V  NG     F P RGLRQGDPL P LFL  +
Sbjct:  887 IQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFYQRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWIMKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVA 1123

HSP 3 Score: 179.874 bits (455), Expect = 1.761e-152
Identity = 100/268 (37.31%), Postives = 136/268 (50.75%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSI 3405
            F +VA+GLS LL+    +  L   K  R  P ISHLLFADD +LF +A +R     +++L  Y   +GQ IN  K ++     +   V   IS    V+R                     FQ L+ +I  R+  W    LS GGKEV IKA++Q IP Y M  F LP +   ++ +L  NFWW    G+R  HW  W +L K K  GGLG+R+   FN ALL +  W LI    SL AR LK KY+ +   + +  G++ S  W+SI
Sbjct: 1119 FLFVADGLSLLLKEKVAQNSLTPFKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGASTPAVSEAISEIFPVERDRT------------------FQSLQAKIWKRVIQWGENHLSTGGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSI 1368

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q7G249_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g37940 PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.113e-152
Identity = 112/268 (41.79%), Postives = 152/268 (56.72%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSI 3405
            F +VA+GLS LL    E+G +  I+   + P ISHLLFADD +LF +A        +++   Y   +GQ IN  K ++ F ++     R  I+N L +  +   + YLGLP   GR  +G FQ L++RI  +I  W    LS GGKEV IKA++Q IP Y M  F LP + C ++  L  NFWW   KGKR  HW  W +L K K  GGLG++++  FN ALL +  W LIDN  SL AR LK KYY N   + +  G + S  W++I
Sbjct: 1041 FLFVADGLSLLLEEKVEQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFGSYATSTGQLINPTKCSILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAI 1308

HSP 2 Score: 203.756 bits (517), Expect = 2.113e-152
Identity = 129/404 (31.93%), Postives = 204/404 (50.50%), Query Frame = 1

Query:  664 TMKLLSWNVRGLGNLRTIRRFQHTLKLYKPQLVCIMETKLDHRRMKLVRRKCGFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWE--RGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNRFKFESWWLMEPNCADVIRQLWDEKSGDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKS 1869
             M  LSWN RG+GN  T++     +K    Q V + ET+    ++K +R + G +    +S+ G  GG+ L W+E+  V +L+ +E  +DA +    N      T  YG PRV +R + W+LL  ++++++ +W V  DFNE ++ +E      R++ Q++AFR VL  CEL DLG +G  +T++  RG + N  +  +LDR +A++ W +LFS Y+VQ+L    S+HCPI++K                           V  Q W +K      K +N+   L+K R        +K+ NL +          D   I +  D   EL   +  EE+ W QR+R NWL+EGD+NT FFH++   R K N+I  L D        +  ME +   YF ++F +
Sbjct:  461 AMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLSPNDPLWHATFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDVLDTCELHDLGISGLPHTYDNRRGGWNNVKV--RLDRALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKLH-----------------------GSVPDQSWSKK------KYKNIGRELEKTR--------KKLSNLLE-------AGTDKAAIRQTSDYMNEL---LYREEMLWLQRSRVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTA 815

HSP 3 Score: 170.244 bits (430), Expect = 2.113e-152
Identity = 86/198 (43.43%), Postives = 121/198 (61.11%), Query Frame = 3

Query: 1917 VNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTV 2510
            V E+MN  L +++ E EI  AL  IGP KA   D F A F+Q+ W  +  +I     E  + G+ L+ +N   IVLIPK   P    +F+PI LC++ YK++ K +VNRL+  LD  I   QS FVP R+ITDN L+A+E  H ++  +  +    A K+D++KAYDRV+W FL+Q M K GF   WV+ +M CI+TV
Sbjct:  832 VTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRNWGCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRLRPFLDELISKNQSAFVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWRFLEQSMYKWGFSHCWVSWVMTCISTV 1029

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Match: Q8H0A5_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g37940 PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.779e-152
Identity = 112/268 (41.79%), Postives = 152/268 (56.72%), Query Frame = 1

Query: 2602 FSYVAEGLSTLLRLAAEEGRLKGIKASRRGPQISHLLFADDCILFGEATERGITTFEQILQEYQECSGQCINYEKSAMFFSSNTLEIVRANISNRLGVKRSNNCENYLGLPNMVGRRKRGAFQHLKDRIKMRIDNWSTRLLS*GGKEVFIKAILQPIPTYTMSCFLLPMTTCYEMEQLMANFWWQKGKGKRGIHWCPWYTL*KLKYEGGLGYRNLAKFNLALLVK*GWTLIDNLTSLLARTLKEKYYQNSDFLRSELGNSPSYTWKSI 3405
            F +VA+GLS LL    E+G +  I+   + P ISHLLFADD +LF +A        +++   Y   +GQ IN  K ++ F ++     R  I+N L +  +   + YLGLP   GR  +G FQ L++RI  +I  W    LS GGKEV IKA++Q IP Y M  F LP + C ++  L  NFWW   KGKR  HW  W +L K K  GGLG++++  FN ALL +  W LIDN  SL AR LK KYY N   + +  G + S  W++I
Sbjct: 1013 FLFVADGLSLLLEEKVEQGAISPIRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFGSYATSTGQLINPTKCSILFGNSLPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAI 1280

HSP 2 Score: 203.756 bits (517), Expect = 2.779e-152
Identity = 131/411 (31.87%), Postives = 207/411 (50.36%), Query Frame = 1

Query:  652 SRPE---TMKLLSWNVRGLGNLRTIRRFQHTLKLYKPQLVCIMETKLDHRRMKLVRRKCGFQNGIDLSATGTRGGICLSWNENYLVNVLSYSESHVDAEVSDEDNSNK*RFTGFYGNPRVSDR*ESWNLLRRLRETNSGAWCVCSDFNEIMYAYEKTGGATRNERQIEAFRKVLTDCELVDLGYTGQKYTWE--RGNFQNTNIQEQLDRGVANNAWLNLFSNYEVQNLPHLFSDHCPILIKTEINSAHDGRNRFKFESWWLMEPNCADVIRQLWDEKSGDAFAKLENLRAGLQKWRRSIKYIKDRKMKNLRD*LVQLDSMDRDDDVIAEIFDVKLELNWEMKNEELYWEQRARANWLREGDKNTMFFHSKATQRQKMNRIRGLEDKNEILKTEREDMETIVKDYFMELFKS 1869
            +RP     M  LSWN RG+GN  T++     +K    Q V + ET+    ++K +R + G +    +S+ G  GG+ L W+E+  V +L+ +E  +DA +    N      T  YG PRV +R + W+LL  ++++++ +W V  DFNE ++ +E      R++ Q++AFR VL  CEL DLG +G  +T++  RG + N  +  +LDR +A++ W +LFS Y+VQ+L    S+HCPI++K                           V  Q W +K      K +N+   L+K R        +K+ NL +          D   I +  D   EL   +  EE+ W QR+R NWL+EGD+NT FFH++   R K N+I  L D        +  ME +   YF ++F +
Sbjct:  426 ARPAPSGAMNCLSWNCRGIGNATTVQELCALVKEASSQFVFLCETRQPVDKIKRLRNRLGLRGFAGVSSDGMSGGLALFWHESVHVEILNKNERFIDAYIRLSPNDPLWHATFVYGEPRVENRHKMWSLLNSIKQSSNLSWLVIGDFNEALWQFEHFSRKPRSDAQMQAFRDVLDTCELHDLGISGLPHTYDNRRGGWNNVKV--RLDRALADDEWRDLFSQYQVQHLVSPCSNHCPIVLKLH-----------------------GSVPDQSWSKK------KYKNIGRELEKTR--------KKLSNLLE-------AGTDKAAIRQTSDYMNEL---LYREEMLWLQRSRVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMFTA 787

HSP 3 Score: 170.244 bits (430), Expect = 2.779e-152
Identity = 86/198 (43.43%), Postives = 121/198 (61.11%), Query Frame = 3

Query: 1917 VNEDMNRILVADYKE*EIVEALKSIGPTKASRPDDFPAIFFQKFWFIVGKEICEFCLEVLNKGMSLQPLNHMNIVLIPKSAHPNSPINFKPICLCSMFYKII*KMIVNRLQKVLDSCIDPAQSVFVPGRLITDNVLIAYEILHTLRNKRVGKKGFMASKIDMTKAYDRVEWGFLKQMMIKMGFDEEWVARIMQCINTV 2510
            V E+MN  L +++ E EI  AL  IGP KA   D F A F+Q+ W  +  +I     E  + G+ L+ +N   IVLIPK   P    +F+PI LC++ YK++ K +VNRL+  LD  I   QS FVP R+ITDN L+A+E  H ++  +  +    A K+D++KAYDRV+W FL+Q M K GF   WV+ +M CI+TV
Sbjct:  804 VTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQRNWGCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRLRPFLDELISKNQSAFVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWRFLEQSMYKWGFSHCWVSWVMTCISTV 1001

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
LIN1_NYCCO	9.333e-28	29.17	LINE-1 reverse transcriptase homolog OS=Nycticebus...	[more]
LORF2_HUMAN	1.190e-26	29.91	LINE-1 retrotransposable element ORF2 protein OS=H...	[more]
M310_ARATH	3.112e-20	40.00	Uncharacterized mitochondrial protein AtMg00310 OS...	[more]
YTX2_XENLA	5.348e-17	31.34	Transposon TX1 uncharacterized 149 kDa protein OS=...	[more]
RNHX1_ARATH	5.952e-15	30.63	Putative ribonuclease H protein At1g65750 OS=Arabi...	[more]
LORF2_MOUSE	1.526e-13	27.31	LINE-1 retrotransposable element ORF2 protein OS=M...	[more]
M1250_ARATH	1.360e-12	61.29	Uncharacterized mitochondrial protein AtMg01250 OS...	[more]
PO22_POPJA	1.531e-11	26.78	Retrovirus-related Pol polyprotein from type-1 ret...	[more]
POLR_DROME	2.436e-9	27.38	Retrovirus-related Pol polyprotein from type-2 ret...	[more]
PO21_NASVI	9.828e-8	26.92	Retrovirus-related Pol polyprotein from type-1 ret...	[more]

BLAST of g.barbadense_cottongen_reftransV1_0091909 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
S8C3P3_9LAMI	7.869e-163	43.32	Uncharacterized protein OS=Genlisea aurea GN=M569_...	[more]
M5WDR3_PRUPE	1.854e-160	42.91	Uncharacterized protein (Fragment) OS=Prunus persi...	[more]
Q2QXH7_ORYSJ	1.501e-159	34.10	Os12g0156200 protein OS=Oryza sativa subsp. japoni...	[more]
Q2QWF4_ORYSJ	2.537e-159	40.00	Retrotransposon protein, putative, unclassified OS...	[more]
Q7X970_ORYSJ	3.959e-159	34.10	BZIP-like protein OS=Oryza sativa subsp. japonica ...	[more]
Q9FW98_ORYSJ	1.101e-158	39.27	Putative non-LTR retroelement reverse transcriptas...	[more]
B9FC76_ORYSJ	6.692e-154	40.67	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8BN96_ORYSI	1.761e-152	33.33	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q7G249_ORYSJ	2.113e-152	41.79	Retrotransposon protein, putative, unclassified OS...	[more]
Q8H0A5_ORYSJ	2.779e-152	41.79	Retrotransposon protein, putative, unclassified OS...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446:SF340	REVERSE TRANSCRIPTASE-RELATED	coord: 25..166
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 25..166

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0091909 ID=g.barbadense_cottongen_reftransV1_0091909; Name=g.barbadense_cottongen_reftransV1_0091909; organism=Gossypium barbadense; type=contig; length=3433bp
CCTTATTCAATAGCGCTCAAAGCTGAATCTTCTATCAAAGGAAAAGAAAG
CATATGGCTCGGGTCCCCGAAAAAGAAAACAATGATACAGTGTAACTATA
CAGGCATGGAAGAACCGGATAGTAACAGTAAGTGCTATACAAATTCATTG
ATGCCGGAGATACAGATAGATATGAAGATGACAAAAGTTTCAAAAAAAAA
CGCAAATGTTCTGGAAGCAGGTGATGGGGAGGAAAATAACAAATTTAATG
ATGGTATTGATAGTCTTGGAAAGTGTATGACCACTGTGGAGGAAAAGTTA
CAGAAAAACCAAAGTAGCATGATAGAAAATCAAATAGATGAAGTGGAGAT
TAAAAATTATGAAGAATGGGAAGCAACGCAACAACCGAGATATGACAGAA
GCAGCTGGCGTAGATTGGACAGGAAGGAGAACTTTGATGTAAATATGTCA
GAAAAGATCTTGGGTAAAATACAAGTTTAATCACGAAGGCCTAGTTGAGA
ATGTGACATATCCCACTAATGAAAGTCCGGTTAAAAAAGCAAAGGCAAAT
AAGGATAGGGAGGATGGTTATGTCAATTCTGATTGTAAGCAGACTGTTTC
CCACGTTAGTTCGGAACTGACAAAAGTTATATTGGCGGCTGCCAATGGGC
AAGCCGACCGGAAACCATGAAACTCCTAAGTTGGAATGTCCGGGGACTGG
GGAATCTCCGGACTATTAGGAGATTTCAACACACGTTGAAACTCTACAAA
CCCCAACTAGTCTGCATAATGGAGACAAAATTGGATCATAGACGCATGAA
ACTAGTCAGGAGAAAATGTGGTTTTCAGAACGGGATAGACTTATCAGCAA
CGGGTACACGTGGTGGAATTTGCCTATCATGGAATGAAAATTACTTGGTT
AATGTTCTTAGTTATTCAGAATCTCATGTTGATGCTGAAGTCTCTGATGA
AGATAACTCAAACAAATAGAGGTTCACCGGATTTTATGGGAATCCACGAG
TCTCAGATAGGTAGGAATCTTGGAATCTTCTTCGAAGGCTACGAGAAACA
AATTCAGGAGCATGGTGTGTATGCAGTGATTTCAACGAGATTATGTATGC
TTATGAAAAAACAGGAGGCGCAACAAGAAATGAAAGGCAGATAGAGGCTT
TTCGAAAGGTCTTAACAGATTGTGAATTAGTTGATTTGGGTTATACGGGC
CAGAAGTACACATGGGAGAGAGGCAATTTCCAGAACACAAATATTCAAGA
ACAGCTAGACCGGGGAGTGGCAAATAATGCTTGGCTCAACTTGTTTAGTA
ATTACGAGGTACAAAATCTTCCACATTTATTCTCTGACCATTGTCCGATT
CTAATCAAAACAGAGATAAATAGTGCACATGATGGGAGAAACCGCTTTAA
GTTTGAGTCTTGGTGGCTTATGGAACCAAATTGTGCTGATGTTATTAGGC
AACTATGGGATGAGAAATCAGGTGATGCTTTTGCTAAATTGGAAAATCTT
CGAGCTGGCCTACAAAAATGGAGACGCAGTATCAAGTACATAAAAGATAG
GAAAATGAAGAACCTTCGAGATTGACTGGTTCAACTTGATAGTATGGATC
GGGACGACGATGTGATAGCAGAAATCTTTGATGTAAAGCTGGAGCTTAAT
TGGGAAATGAAAAATGAGGAATTGTATTGGGAACAACGGGCCAGAGCCAA
TTGGTTGCGTGAGGGTGATAAAAATACAATGTTTTTTCATAGTAAAGCCA
CGCAAAGACAGAAGATGAATCGTATCCGGGGATTAGAAGACAAGAATGAA
ATCCTTAAGACAGAAAGAGAGGATATGGAGACCATCGTTAAAGATTATTT
TATGGAGCTCTTTAAATCAAAAGGGTTGGCAACACAAACCATCTCTTATC
AGGGGTTAAAAAATGTGTCAATGAGGATATGAATCGAATATTAGTAGCAG
ATTATAAGGAGTAAGAGATAGTTGAAGCGCTTAAGAGTATAGGGCCGACA
AAAGCCTCTAGGCCTGATGACTTCCCAGCTATTTTCTTTCAGAAATTTTG
GTTTATTGTGGGCAAGGAGATTTGTGAGTTTTGCTTAGAAGTCCTAAATA
AAGGTATGTCTTTGCAACCTTTAAACCATATGAATATAGTATTAATTCCA
AAATCGGCTCACCCGAATAGCCCCATAAATTTTAAACCTATCTGCCTATG
TTCGATGTTTTACAAAATAATCTAAAAAATGATAGTAAATAGACTCCAAA
AGGTTCTTGATTCTTGTATTGATCCAGCCCAAAGTGTGTTTGTCCCTGGA
AGGCTTATTACTGATAATGTTCTCATTGCATACGAAATCTTACATACTCT
CCGGAACAAAAGAGTGGGAAAAAAAGGGTTCATGGCCTCTAAGATTGATA
TGACTAAGGCATACGATAGGGTGGAATGGGGGTTTCTGAAACAAATGATG
ATTAAGATGGGTTTTGATGAAGAATGGGTTGCGAGAATTATGCAGTGTAT
TAATACGGTCACATATTCGGTGATTTTAAATGGCGTCCCAGGAATGGTAT
TTAACCCTGAAAGAGGACTACGCCAAGGCGATCCACTTAGCCCTTTGTTA
TTTCTCATATGTAGCGGAAGGACTTTCTACACTACTAAGGCTAGCAGCTG
AGGAAGGAAGACTAAAAGGGATCAAAGCAAGCAGACGAGGACCTCAGATC
TCTCACTTGTTATTTGCTGATGATTGCATTCTATTTGGGGAAGCAACAGA
GAGAGGAATTACAACATTTGAACAAATCCTACAAGAGTACCAGGAATGTT
CCGGTCAATGCATTAATTATGAAAAATCAGCGATGTTTTTCAGCTCAAAT
ACTTTAGAGATAGTTCGAGCGAATATATCAAACCGACTGGGAGTTAAAAG
GTCCAATAACTGTGAAAACTACTTGGGTTTACCAAATATGGTGGGCCGAA
GAAAACGTGGGGCTTTTCAACATTTAAAAGACCGTATAAAGATGAGAATA
GACAATTGGAGTACTCGTTTGTTATCTTAAGGAGGGAAAGAGGTGTTCAT
TAAAGCTATTTTACAGCCAATTCCCACATACACAATGTCCTGTTTCTTAT
TACCAATGACTACGTGCTACGAAATGGAACAATTGATGGCCAACTTCTGG
TGGCAAAAGGGGAAAGGTAAACGCGGAATTCATTGGTGCCCTTGGTACAC
ATTATGAAAATTAAAATATGAGGGTGGACTTGGTTATCGTAATTTAGCTA
AATTCAATTTGGCCCTCCTTGTAAAATAAGGGTGGACATTAATTGATAAC
CTGACGTCCCTTTTGGCGAGAACATTAAAAGAAAAGTATTATCAAAACTC
TGATTTCTTAAGGTCGGAGTTAGGAAACTCACCATCATATACTTGGAAAA
GTATATGGGCAGCCAAAAGGCTACTGCTCTCAG

Search form

g.barbadense_cottongen_reftransV1_0091909, g.barbadense_cottongen_reftransV1_0091909 (contig) Gossypium barbadense

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