g.barbadense_cottongen_reftransV1_0091728, g.barbadense_cottongen_reftransV1_0091728 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0091728
Unique Name	g.barbadense_cottongen_reftransV1_0091728
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt06	chromosome	g.barbadense_cottongen_reftransV1_0091728:1..3378 . Dt06:28605162..28611021 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR53_ARATH (Protein NRT1/ PTR FAMILY 2.11 OS=Arabidopsis thaliana GN=NPF2.11 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.247e-16
Identity = 43/154 (27.92%), Postives = 86/154 (55.84%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGIIIAVTYSLD-SFAVIQTSTMDRHI-TPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQE---GLSDKPQAMVHISALWILPYAIMSG 568
            CT+ +VEE+K ++RV+P+W    I  +T +   ++ V Q    DR + +  F IPA ++   ++    V I +YDR+++P   ++ G    ++  QR+ TG+  + A++V    V+  RR  A+ +   G++ +   +  +SA+W++P   ++G
Sbjct:  341 CTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFVIPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAG 494

HSP 2 Score: 31.9574 bits (71), Expect = 2.247e-16
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1

Query:   34 LRFLNKACVIKNPQQDLTSDGNASNPWSL 120
             RFL+KA ++  P+  L  DG  ++PW L
Sbjct:  313 FRFLDKAAIL-TPEDKLQPDGKPADPWKL 340

HSP 3 Score: 21.557 bits (44), Expect = 2.247e-16
Identity = 7/17 (41.18%), Postives = 10/17 (58.82%), Query Frame = 1

Query:  568 LGSDFIGIGQTEFFYSE 618
            +   F  IGQ EF+Y +
Sbjct:  495 VAEAFAAIGQMEFYYKQ 511

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana GN=NPF8.3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.042e-15
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGIIIAVTYSLDSFAVIQTSTMDRHITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
            CT+ +VEELK LIR+ P+W++GII +  Y+  S   +Q           F +P  + G     + ++ + LYDR I+PLA K  G     +  QRM  GL  S   M +  +V+ IR  +A   GL +   A V IS LW +P   + G
Sbjct:  336 CTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVES-GAPVPISVLWQIPQYFILG 483

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR23_ARATH (Protein NRT1/ PTR FAMILY 5.13 OS=Arabidopsis thaliana GN=NPF5.13 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.226e-15
Identity = 49/166 (29.52%), Postives = 89/166 (53.61%), Query Frame = 2

Query:  116 VFCTIDRVEELKALIRVIPVWSTGIIIAVTYS-LDSFAVIQTSTMDRHITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSGWVRISLELDRQNSF 610
            V C    VE+  AL+R+IPVW T +  A+ ++   +F   Q  TM+R I P  +IP  S    + I+ V+ + +YDR+++P+   +  +P  ++  +R+ TG++ +   MV   +V+  R E A + GL D+P+  + +S  W+ P  ++ G   +   +  Q  F
Sbjct:  307 VACKSRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFF 472

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR33_ARATH (Protein NRT1/ PTR FAMILY 6.4 OS=Arabidopsis thaliana GN=NPF6.4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.164e-15
Identity = 51/152 (33.55%), Postives = 91/152 (59.87%), Query Frame = 2

Query:  116 VFCTIDRVEELKALIRVIPVWSTGIIIAVTYS-LDSFAVIQTSTMDRHITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
            +  T+ +VEE+K +++++P+W+T I+    YS + +F V Q + MDR +   F +PAGS+ A +I+T ++  +L +R+ +PL  ++  +P  ++  QR+  GL+ S AAM    V++  RRE A+    +DK      ISA W++P   + G
Sbjct:  322 IVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDRKLG-SFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMAAMAVAAVIENARREAAVN---NDK-----KISAFWLVPQYFLVG 464

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR15_ARATH (Protein NRT1/ PTR FAMILY 4.4 OS=Arabidopsis thaliana GN=NPF4.4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.318e-15
Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGIII-AVTYSLDSFAVIQTSTMDRHITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
            CTI++V ++K L+ VIP+++  II   +   L +F+V Q S+M+ HIT  F IP  S  A   I  +  + LY+   +PLA K+ G    +S  QR+ TGL  +  +MV+  +V+  RRE  +++         V +S  WI P  ++ G
Sbjct:  327 CTIEQVHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQN--------VMLSIFWIAPQFLIFG 468

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0D2QJU4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G027200 PE=4 SV=1)

HSP 1 Score: 501.901 bits (1291), Expect = 4.342e-164
Identity = 248/277 (89.53%), Postives = 255/277 (92.06%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGFNC---RTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF C   RT Y +TV  ARWEYSTRP YGWGDVGSKQKSTAGW AA PIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGA GKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTH+VELEATTTDSGTTL APTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEV+K+ALQ
Sbjct:   43 KVLEGFQV---SPLWNQGFICDDGRTYYAKTVNTARWEYSTRPIYGWGDVGSKQKSTAGWAAALPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGARGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHMVELEATTTDSGTTLRAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVIKSALQ 316

HSP 2 Score: 100.138 bits (248), Expect = 4.199e-19
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = -2

Query: 1937 IGRHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2098
            +G+HEL LGNTF+ANK SRPP KEVPP+EFNRKVLEGFQVSPLW+QGFI DDGR
Sbjct:   11 LGKHELALGNTFVANKASRPPGKEVPPQEFNRKVLEGFQVSPLWNQGFICDDGR 64

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0D2PTW5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G027200 PE=4 SV=1)

HSP 1 Score: 502.286 bits (1292), Expect = 1.307e-163
Identity = 248/277 (89.53%), Postives = 255/277 (92.06%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGFNC---RTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF C   RT Y +TV  ARWEYSTRP YGWGDVGSKQKSTAGW AA PIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGA GKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTH+VELEATTTDSGTTL APTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEV+K+ALQ
Sbjct:   84 KVLEGFQV---SPLWNQGFICDDGRTYYAKTVNTARWEYSTRPIYGWGDVGSKQKSTAGWAAALPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGARGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHMVELEATTTDSGTTLRAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVIKSALQ 357

HSP 2 Score: 98.5969 bits (244), Expect = 1.763e-18
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL LGNTF+ANK SRPP KEVPP+EFNRKVLEGFQVSPLW+QGFI DDGR
Sbjct:   54 RHELALGNTFVANKASRPPGKEVPPQEFNRKVLEGFQVSPLWNQGFICDDGR 105

HSP 3 Score: 97.0561 bits (240), Expect = 5.380e-18
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = -2

Query: 2840 MYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSK 3001
            MYSVENP F+R LT LE LQHGPRFTGVGAQ+LGA  +YICQYS+ESQNFWGS+
Sbjct:    1 MYSVENPAFKRTLTPLEMLQHGPRFTGVGAQVLGANGKYICQYSEESQNFWGSR 54

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0D2LTZ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G027200 PE=4 SV=1)

HSP 1 Score: 506.523 bits (1303), Expect = 2.003e-163
Identity = 248/277 (89.53%), Postives = 255/277 (92.06%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGFNC---RTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF C   RT Y +TV  ARWEYSTRP YGWGDVGSKQKSTAGW AA PIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGA GKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTH+VELEATTTDSGTTL APTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEV+K+ALQ
Sbjct:  214 KVLEGFQV---SPLWNQGFICDDGRTYYAKTVNTARWEYSTRPIYGWGDVGSKQKSTAGWAAALPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGARGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHMVELEATTTDSGTTLRAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVIKSALQ 487

HSP 2 Score: 266.159 bits (679), Expect = 2.332e-74
Identity = 128/188 (68.09%), Postives = 148/188 (78.72%), Query Frame = -2

Query: 2825 PTLNSINELRHFSSCYIGLRSLNSKTPVKLSQSSNFNXXXXXXXXXXXXXXRSNSPIIACSSIAGTDTETSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3388
            P + S+N+L  FSSC+IGL SLNSK+ +K SQSS FN               SNSP++ACSS++  ++ETSS A+ R VSV+PVYVPTP NR+TRTPHSGYHFDGTTRQFFEGWYFKVSIP RKQSFCFMYSVENP F+R LT LE LQHGPRFTGVGAQ+LGA  +YICQYS+ESQNFWGS+    L
Sbjct:    3 PNIYSLNQLHQFSSCFIGLHSLNSKSTLKFSQSSTFNASPRELGPLRLGFR-SNSPVVACSSVSEIESETSSPAAKRSVSVSPVYVPTPVNRETRTPHSGYHFDGTTRQFFEGWYFKVSIPARKQSFCFMYSVENPAFKRTLTPLEMLQHGPRFTGVGAQVLGANGKYICQYSEESQNFWGSRHELAL 189

HSP 3 Score: 101.679 bits (252), Expect = 6.009e-19
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL LGNTF+ANK SRPP KEVPP+EFNRKVLEGFQVSPLW+QGFI DDGR
Sbjct:  184 RHELALGNTFVANKASRPPGKEVPPQEFNRKVLEGFQVSPLWNQGFICDDGR 235

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0B0MHV0_GOSAR (Tocopherol cyclase, chloroplastic-like protein OS=Gossypium arboreum GN=F383_13574 PE=4 SV=1)

HSP 1 Score: 493.426 bits (1269), Expect = 2.519e-158
Identity = 244/277 (88.09%), Postives = 251/277 (90.61%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGFNC---RTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF C   RT Y +TVK ARWEYSTRP YGWGDVGSKQKSTAGW AA PIFEPHWQICMAS     WIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLT AGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTH+VELEATTTDSGTTL APTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEV+K+ALQ
Sbjct:  215 KVLEGFQV---SPLWNQGFICDDGRTYYAKTVKTARWEYSTRPIYGWGDVGSKQKSTAGWAAALPIFEPHWQICMAS-----WIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTAAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHMVELEATTTDSGTTLRAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVIKSALQ 483

HSP 2 Score: 268.47 bits (685), Expect = 3.118e-75
Identity = 139/184 (75.54%), Postives = 156/184 (84.78%), Query Frame = -2

Query: 2825 SINELRHFSSCYIGLRSLNSKTPVKLSQSSNFNXXXXXXXXXXXXXXRSNSPIIACSSIAGTDTETSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3376
            S+N+L  FSSC+IGL S NSK+ +K SQSS FN   PR LRPLRLGFRSNSP++AC S++  +TETSS A+ R VSV+PVYVPTP NRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENP F+R LT LE LQHGPRFTGVGAQ+LGA  +YICQYS+ESQNFWGS+    L
Sbjct:    7 SLNQLHQFSSCFIGLHSQNSKSTLKFSQSSTFNAFSPRELRPLRLGFRSNSPVVACRSVSEIETETSSPAAKRSVSVSPVYVPTPVNRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPAFKRTLTPLEMLQHGPRFTGVGAQVLGAKGKYICQYSEESQNFWGSRHELTL 190

HSP 3 Score: 102.834 bits (255), Expect = 2.474e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL LGNTF+ANK SRPPSKEVPP+EFNRKVLEGFQVSPLW+QGFI DDGR
Sbjct:  185 RHELTLGNTFVANKASRPPSKEVPPQEFNRKVLEGFQVSPLWNQGFICDDGR 236

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0D2Q9A5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G050600 PE=4 SV=1)

HSP 1 Score: 472.241 bits (1214), Expect = 4.451e-153
Identity = 231/277 (83.39%), Postives = 246/277 (88.81%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGF---NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF   + RTSY RTVK ARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMA GLSTGWIEWDGERFEFQDAPSYSEKNWGG FPRKWFWAQCNVFEGASG+++LT  GGLRQLPGLTETFEN ALIGVHYDGIFYEFVPWNGV++WEIA WGYW IAAEN+TH+VELEATT D GTTL APT+EAGL PAC DTC G+L L+IWEK  GG+KGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ
Sbjct:   22 KVLEGFQV---SPLWHQGFIRDDGRTSYARTVKTARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEVALTAGGGLRQLPGLTETFENAALIGVHYDGIFYEFVPWNGVLSWEIAPWGYWCIAAENETHMVELEATTNDPGTTLRAPTIEAGLAPACKDTCFGNLRLQIWEKKYGGTKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 295

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0D2UGJ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G050600 PE=4 SV=1)

HSP 1 Score: 473.781 bits (1218), Expect = 5.370e-152
Identity = 231/277 (83.39%), Postives = 246/277 (88.81%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGF---NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF   + RTSY RTVK ARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMA GLSTGWIEWDGERFEFQDAPSYSEKNWGG FPRKWFWAQCNVFEGASG+++LT  GGLRQLPGLTETFEN ALIGVHYDGIFYEFVPWNGV++WEIA WGYW IAAEN+TH+VELEATT D GTTL APT+EAGL PAC DTC G+L L+IWEK  GG+KGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ
Sbjct:  132 KVLEGFQV---SPLWHQGFIRDDGRTSYARTVKTARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEVALTAGGGLRQLPGLTETFENAALIGVHYDGIFYEFVPWNGVLSWEIAPWGYWCIAAENETHMVELEATTNDPGTTLRAPTIEAGLAPACKDTCFGNLRLQIWEKKYGGTKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 405

HSP 2 Score: 181.8 bits (460), Expect = 1.047e-45
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = -2

Query: 2825 YHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3088
            YHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYD+YICQYSDESQNFWGS+   +L
Sbjct:   20 YHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDKYICQYSDESQNFWGSRHELIL 107

HSP 3 Score: 115.931 bits (289), Expect = 6.855e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR
Sbjct:  102 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 153

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0D2TDW0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G050600 PE=4 SV=1)

HSP 1 Score: 476.863 bits (1226), Expect = 5.574e-152
Identity = 231/277 (83.39%), Postives = 246/277 (88.81%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGF---NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF   + RTSY RTVK ARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMA GLSTGWIEWDGERFEFQDAPSYSEKNWGG FPRKWFWAQCNVFEGASG+++LT  GGLRQLPGLTETFEN ALIGVHYDGIFYEFVPWNGV++WEIA WGYW IAAEN+TH+VELEATT D GTTL APT+EAGL PAC DTC G+L L+IWEK  GG+KGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ
Sbjct:  215 KVLEGFQV---SPLWHQGFIRDDGRTSYARTVKTARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEVALTAGGGLRQLPGLTETFENAALIGVHYDGIFYEFVPWNGVLSWEIAPWGYWCIAAENETHMVELEATTNDPGTTLRAPTIEAGLAPACKDTCFGNLRLQIWEKKYGGTKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 488

HSP 2 Score: 299.671 bits (766), Expect = 4.846e-86
Identity = 176/184 (95.65%), Postives = 178/184 (96.74%), Query Frame = -2

Query: 2825 SINELRHFSSCYIGLRSLNSKTPVKLSQSSNFNXXXXXXXXXXXXXXRSNSPIIACSSIAGTDTETSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3376
            SINELRHFSSCYIGLRSLNSKT VKLSQSSNFNGLFPRRLRPLRLGFRSNSPIIACSSIA TDTETSSTASDRPV VNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYD+YICQYSDESQNFWGSK   +L
Sbjct:    7 SINELRHFSSCYIGLRSLNSKTAVKLSQSSNFNGLFPRRLRPLRLGFRSNSPIIACSSIAETDTETSSTASDRPVPVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDKYICQYSDESQNFWGSKHELIL 190

HSP 3 Score: 110.923 bits (276), Expect = 6.312e-22
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            +HELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR
Sbjct:  185 KHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 236

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0D2RUB9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G050600 PE=4 SV=1)

HSP 1 Score: 476.863 bits (1226), Expect = 5.939e-152
Identity = 231/277 (83.39%), Postives = 246/277 (88.81%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGF---NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF   + RTSY RTVK ARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMA GLSTGWIEWDGERFEFQDAPSYSEKNWGG FPRKWFWAQCNVFEGASG+++LT  GGLRQLPGLTETFEN ALIGVHYDGIFYEFVPWNGV++WEIA WGYW IAAEN+TH+VELEATT D GTTL APT+EAGL PAC DTC G+L L+IWEK  GG+KGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ
Sbjct:  215 KVLEGFQV---SPLWHQGFIRDDGRTSYARTVKTARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEVALTAGGGLRQLPGLTETFENAALIGVHYDGIFYEFVPWNGVLSWEIAPWGYWCIAAENETHMVELEATTNDPGTTLRAPTIEAGLAPACKDTCFGNLRLQIWEKKYGGTKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 488

HSP 2 Score: 298.516 bits (763), Expect = 1.197e-85
Identity = 175/184 (95.11%), Postives = 178/184 (96.74%), Query Frame = -2

Query: 2825 SINELRHFSSCYIGLRSLNSKTPVKLSQSSNFNXXXXXXXXXXXXXXRSNSPIIACSSIAGTDTETSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3376
            SINELRHFSSCYIGLRSLNSKT VKLSQSSNFNGLFPRRLRPLRLGFRSNSPIIACSSIA TDTETSSTASDRPV VNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYD+YICQYSDESQNFWGS+   +L
Sbjct:    7 SINELRHFSSCYIGLRSLNSKTAVKLSQSSNFNGLFPRRLRPLRLGFRSNSPIIACSSIAETDTETSSTASDRPVPVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDKYICQYSDESQNFWGSRHELIL 190

HSP 3 Score: 112.079 bits (279), Expect = 2.672e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR
Sbjct:  185 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 236

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A061GK03_THECC (Tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) isoform 1 OS=Theobroma cacao GN=TCM_037170 PE=4 SV=1)

HSP 1 Score: 454.521 bits (1168), Expect = 2.015e-143
Identity = 219/277 (79.06%), Postives = 237/277 (85.56%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGF---NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF   + RT+Y   VK ARWEYSTRP YGWG+VGSKQKSTAGWLAA PIFEPHWQICMA GLSTGWIEWD ERFEFQ+APSYSEKNWGGGFPRKWFWAQCNVFEGASG++SLT  GGLRQLPGLTETFEN ALIGVHYDG+FYEFVPWNGVV+WEIAQWG W + A+N+TH+ ELEATT D GTTL APT  AGL PAC DTC GDL LKIWEK  GG+KGKLILDVKSDMAALEVGGGPWFNTWKG+TTTPEV+K ALQ
Sbjct:  216 KVLEGFQV---SPLWHQGFIRDDGRTTYANIVKTARWEYSTRPIYGWGNVGSKQKSTAGWLAALPIFEPHWQICMAGGLSTGWIEWDSERFEFQNAPSYSEKNWGGGFPRKWFWAQCNVFEGASGEVSLTAGGGLRQLPGLTETFENAALIGVHYDGVFYEFVPWNGVVSWEIAQWGSWYMEAKNETHMAELEATTNDPGTTLRAPTTVAGLAPACKDTCFGDLRLKIWEKKSGGTKGKLILDVKSDMAALEVGGGPWFNTWKGETTTPEVIKNALQ 489

HSP 2 Score: 273.092 bits (697), Expect = 1.014e-76
Identity = 145/189 (76.72%), Postives = 161/189 (85.19%), Query Frame = -2

Query: 2825 PTLNSINELRHFSSCYIGLRSLNSKTPVKLSQSSNFNXXXXXXXXXXXXXXRSNSPIIACSSIAGTDTETSSTASDR-PVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3388
            P + S+NEL HFSSC IG R LNSK  VK SQSS FNG  PR LRPLR+GFRSNS IIACSS+A  +T TSS A++   VSVNPVYVPTPANR+ RTPHSGYHFDGTTRQFFEGWYFKV+IPE++QSFCFMYSVENP FRRKLT LE LQHGPRFTGVGAQILGAYD+YICQY++ESQNFWGS+   +L
Sbjct:    3 PNIYSVNELHHFSSCCIGFRPLNSKPTVKFSQSSTFNGFSPRGLRPLRVGFRSNSRIIACSSVAEPETGTSSPAAESSAVSVNPVYVPTPANRNARTPHSGYHFDGTTRQFFEGWYFKVAIPEQRQSFCFMYSVENPAFRRKLTPLEMLQHGPRFTGVGAQILGAYDKYICQYTEESQNFWGSRHELIL 191

HSP 3 Score: 113.235 bits (282), Expect = 1.142e-22
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHELILGNTFLANK+SRPPSKEVPP+EFNRKVLEGFQVSPLWHQGFIRDDGR
Sbjct:  186 RHELILGNTFLANKDSRPPSKEVPPQEFNRKVLEGFQVSPLWHQGFIRDDGR 237

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A0B0N809_GOSAR (Tocopherol cyclase, chloroplastic-like protein OS=Gossypium arboreum GN=F383_11502 PE=4 SV=1)

HSP 1 Score: 452.595 bits (1163), Expect = 9.507e-143
Identity = 222/277 (80.14%), Postives = 239/277 (86.28%), Query Frame = -3

Query:  685 KLLSRYQLFR*SCLLGLGF---NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 1506
            K+L  +Q+   S L   GF   + RTSY RTVK A WEY+TRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMA     GWIEWDGERFEFQDAPSYSEKNWGG FPRKWFWAQCNVFEGASG+++LT  GGLRQLPGLTETFEN ALIGVHYDGIFYEFVPWNG+++WEIA WGYW IAAEN+TH+VELEATT D GTTL APT+EAGL PAC DTC G+L L+I  K  GG+KGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ
Sbjct:  215 KVLEGFQV---SPLWHQGFIRDDGRTSYARTVKTACWEYTTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMA-----GWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEVALTAGGGLRQLPGLTETFENAALIGVHYDGIFYEFVPWNGILSWEIAPWGYWCIAAENETHMVELEATTNDPGTTLRAPTIEAGLAPACKDTCFGNLRLQIRVKKYGGTKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQ 483

HSP 2 Score: 324.709 bits (831), Expect = 5.473e-95
Identity = 174/184 (94.57%), Postives = 178/184 (96.74%), Query Frame = -2

Query: 2825 SINELRHFSSCYIGLRSLNSKTPVKLSQSSNFNXXXXXXXXXXXXXXRSNSPIIACSSIAGTDTETSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3376
            SINELRHF SCYIGLRSLNSKT VKLSQSSNFNGLFPRRLRPLRLGFRSNSPIIACSSIA TDTETSSTAS+RPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYD+YICQYSDESQNFWGS+   +L
Sbjct:    7 SINELRHFPSCYIGLRSLNSKTAVKLSQSSNFNGLFPRRLRPLRLGFRSNSPIIACSSIAETDTETSSTASNRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDKYICQYSDESQNFWGSRHELIL 190

HSP 3 Score: 114.005 bits (284), Expect = 6.363e-23
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHELILGNTFL NKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR
Sbjct:  185 RHELILGNTFLTNKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 236

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
PTR53_ARATH	2.247e-16	27.92	Protein NRT1/ PTR FAMILY 2.11 OS=Arabidopsis thali...	[more]
PTR2_ARATH	1.042e-15	34.90	Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thalia...	[more]
PTR23_ARATH	1.226e-15	29.52	Protein NRT1/ PTR FAMILY 5.13 OS=Arabidopsis thali...	[more]
PTR33_ARATH	2.164e-15	33.55	Protein NRT1/ PTR FAMILY 6.4 OS=Arabidopsis thalia...	[more]
PTR15_ARATH	2.318e-15	34.00	Protein NRT1/ PTR FAMILY 4.4 OS=Arabidopsis thalia...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2QJU4_GOSRA	4.342e-164	89.53	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PTW5_GOSRA	1.307e-163	89.53	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2LTZ7_GOSRA	2.003e-163	89.53	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0MHV0_GOSAR	2.519e-158	88.09	Tocopherol cyclase, chloroplastic-like protein OS=...	[more]
A0A0D2Q9A5_GOSRA	4.451e-153	83.39	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UGJ8_GOSRA	5.370e-152	83.39	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TDW0_GOSRA	5.574e-152	83.39	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RUB9_GOSRA	5.939e-152	83.39	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061GK03_THECC	2.015e-143	79.06	Tocopherol cyclase, chloroplast / vitamin E defici...	[more]
A0A0B0N809_GOSAR	9.507e-143	80.14	Tocopherol cyclase, chloroplastic-like protein OS=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025893	Tocopherol cyclase	PFAM	PF14249	Tocopherol_cycl	coord: 1..181 e-value: 1.2E-72 score: 244.8
None	No IPR available	PANTHER	PTHR35309	FAMILY NOT NAMED	coord: 1..203
None	No IPR available	PANTHER	PTHR35309:SF2	TOCOPHEROL CYCLASE, CHLOROPLASTIC	coord: 1..203

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0091728 ID=g.barbadense_cottongen_reftransV1_0091728; Name=g.barbadense_cottongen_reftransV1_0091728; organism=Gossypium barbadense; type=contig; length=3467bp
GGGAATAAAGTAACTGAAAATGGTCTCATTTCACTAAGGTTTCTGAATAA
AGCTTGTGTGATAAAGAACCCTCAACAGGACTTAACCTCTGATGGCAATG
CTTCAAACCCATGGAGTCTTTTGTACAATAGATCGAGTGGAAGAGCTGAA
AGCGTTAATCAGAGTGATACCGGTCTGGTCTACGGGAATCATAATCGCTG
TGACATATTCTTTGGATTCTTTTGCAGTTATTCAAACAAGTACCATGGAC
CGACATATAACTCCAAAGTTTGATATTCCAGCAGGTTCATTTGGTGCGTC
TGTGATCATCACTTTTGTAGTAGGGATTGCTTTGTATGATCGGATAATTC
TTCCTTTAGCATTAAAAATGAAAGGGGAACCGGTTTGTCTTAGTTTTAAG
CAAAGAATGGAGACCGGACTTCTTTGCTCTTGTGCAGCCATGGTTTCATT
AACAGTTGTGAAGTATATTCGACGAGAAATTGCAATCCAAGAAGGGCTTT
CGGATAAACCACAAGCCATGGTGCACATTTCTGCACTATGGATTCTGCCA
TATGCTATCATGTCCGGCTGGGTTCGGATTTCATTGGAATTGGACAGACA
GAATTCTTTTACTCTGAACCATGTCCAGTGTTGCAGCCAATCTTCAAATG
TTAGGAGCCTCTTCCGGAAGTCTGGTGGTGAGTTCTGAAGAGCAGTTTTA
AGGACCTCTGGTGTAGTGGTCTTCCCTTTCCAAGTGTTGAACCATGGCCC
TCCTCCTACTTCTAGTGCCGCCATGTCACTTTTAACATCCAAGATCAGCT
TGCCTTTACTGCCACCAACATTTTTTTCCCAGATCTTCAATGTTAGATCA
CCTAAACAAGTGTCTAAACAAGCTGGAGTAAGACCAGCCTCTACTGTTGG
AGCAAGCAATGTCGTACCTGAATCAGTTGTTGTTGCCTCTAACTCAACCA
AGTGTGTTTTGTTTTCTGCAGCAATGTTCCAGTAACCCCACTGGGCAATT
TCCCAAGTTACAACACCATTCCATGGCACAAATTCATAGAAAATTCCATC
ATAGTGCACTCCAATCAATGCAGTATTTTCGAAGGTCTCAGTCAGTCCAG
GCAGCTGCCTTAATCCACCAGCCGTGGTCAGAGAAATTTTTCCGCTAGCA
CCTTCAAAGACGTTACATTGAGCCCAAAACCATTTTCTAGGGAAGCCTCC
ACCCCAATTCTTTTCTGAATATGAAGGGGCATCTTGAAACTCAAACCTTT
CACCATCCCACTCTATCCAGCCTGTTGAAAGTCCACTGGCCATGCAAATT
TGCCAATGGGGTTCGAATATGGGAAAAGCTGCAAGCCAGCCAGCTGTTGA
CTTCTGCTTGGACCCAACATCACCCCATCCATAGGTGGGGCGAGTACTGT
ACTCCCAACGTGCAGCTTTAACAGTTCTTGTATAAGATGTCCTGCAATTA
AAACCTAAACCAAGTAAACAGGATTACCGAAATAACTGATAGCGACTGAG
AAGTTTTGCTCAATTCTAATTTTGAGAACCTAAAAAGTAACAAATCACAA
CATAGACATTTGAATGAAAATAGGAATGGATCTTGATAGAAGAACCACTT
CTTTTCTGATGGCATGTTTGTTATGCCAACGGTTATACAAGGGAGATCAC
TATGCAGAAAGAATGCCTCAACAAGGGGGCATAGGAAAATCATCAAAATA
GCAATTTTTTAATCTTCTCGTAAAGGAATAACACTATTAATTCTTCTGGG
ATATCAATAAAAGGATATTTTGTTTCTTCACAGCATGACAAATAAGTCTA
GTGCACATTCACTGCTAATTAAATGCTTTACTTCTCTGTAGAAAGGAGCA
AAAACGACCATAGAATACAACAAAGTAAGGGTTTATTACATATGTTTATA
TTAAAATCATGCTTATGGATTCAACAAGAGGAGGCACCTGCCATCATCAC
GAATAAAGCCTTGATGCCAAAGTGGGCTAACTTGAAAGCCCTCCAAAACT
TTTCTATTGAATTCCTCAGGAGGGACCTCCTTACTTGGAGGTCGTGAGTT
TTTGTTGGCTAAAAAAGTATTCCCCAATATCAGCTCATGCCTGCCTATGC
ATTAAAAAGTTATAAATTAGGCATAGAACGTCACTCAATTATGCATTTCA
TCACTGCACTATTAAGGTATAAACTTGAGAAACACCAAAAGACATATGAT
GATAAGAGTAAAATAAATATAGCTAATAACTAAATAGATACAACTGCACT
CAGTAATAAACATGAAGCTTGGAGAACCAAAGACTTTCTAGCGAGAGGCC
AAAATAAAATAAATTTGAATGGCCCAAAATTAGAAGTTTAAAACAACCGA
AAAGGATCTTTGAAACCTGAGACAAACCAGATATCAGAAAGGTTTTGAAT
TGCTAAAGTCTAACAAGACCAAAAGATTAAGTGACGATGGTGCATAAAAA
TGAATGAAACATCATAGTGCAATAAAATGCAGAGGGTGAAGTGAATTAAA
ATCAAGTTAAATTAATGTATCAACATTTAATTAGAAAGTTCAGGTTAAAT
GCCTGAGAACATATTCATATAGATTAACTTTCTATCTTGCTAGATATCCA
AGAACAATTATAGGAGATAGCTTCCCACCATAAATGCTAGCTTCCTCAAA
AGGTAATATGATAAAATTTTCTACGATGAAGTCAACAAGTAGTTAATCGA
GCAGCAACTATACAAAATAAGTGTCTTTTACACCCAGTAGATTGTAGTTT
CATTACTACATAATCAATCAGGTGCAATGGGCGGCTGTAATAAGACCAGT
CCTTAGATTAAAATCTGATGAAACCAATAAAGTAGAAAACTTACTTCCCC
AAAAGTTCTGAGATTCATCACTGTATTGGCATATATACTCGTCATAAGCA
CCAAGGATTTGTGCCCCAACTCCTGTAAATCTAGGTCCGTGCTGCAGTGT
TTCCAATTGGGTCAGTTTCCTCCTAAATACGGGATTCTCCACCGAGTACA
TGAAGCAAAAGCTCTGTTTTCGTTCTGGGATTGATACCTTAAAGTACCAA
CCCTCAAAAAATTGTCGAGTGGTTCCATCAAAGTGGTACCCGCTGTGAGG
AGTTCGAGTGTCTCGATTAGCCGGCGTGGGAACATAAACCGGATTGACAG
AGACGGGTCTATCGGATGCCGTAGAAGAAGTTTCGGTATCAGTCCCAGCG
ATGGAGCTGCATGCGATGATCGGCGAGTTCGATCGAAACCCTAACCTGAG
AGGGCGGAGGCGTCTAGGAAATAGTCCATTGAAGTTAGAAGATTGGGATA
ATTTAACGGGGGTTTTGGAGTTTAGAGAACGAAGACCAATATAACAAGAA
GAGAAATGGCGAAGCTCGTTGATAGAGTTGAGGGTTGGAAGGAAAGGGGA
AGAAGAATGAAAAAAAGAAGATGCTTCAGACGTGAGAATGAAAAAGAGGT
AGAAGGGTAAAGTTGAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR025893	Tocopherol_cyclase

Vocabulary: **Molecular Function**
Term	Definition
GO:0009976	tocopherol cyclase activity

Search form

g.barbadense_cottongen_reftransV1_0091728, g.barbadense_cottongen_reftransV1_0091728 (contig) Gossypium barbadense

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