g.barbadense_cottongen_reftransV1_0091728, g.barbadense_cottongen_reftransV1_0091728 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0091728
Unique Name	g.barbadense_cottongen_reftransV1_0091728
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt06	chromosome	g.barbadense_cottongen_reftransV1_0091728:1..3378 . Dt06:28605162..28611021 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: TOCC_ARATH (Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=2 SV=1)

HSP 1 Score: 409.453 bits (1051), Expect = 1.015e-128
Identity = 189/254 (74.41%), Postives = 215/254 (84.65%), Query Frame = -3

Query:  685 RTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTT-TPEVLKTALQ 1443
            RT Y  TVK+ARWEYSTRP YGWGDVG+KQKSTAGW AAFP+FEPHWQICMA GLSTGWIEW GERFEF+DAPSYSEKNWGGGFPRKWFW QCNVFEGA+G+++LT  GGLRQLPGLTET+EN AL+ VHYDG  YEFVPWNGVV WE++ WGYW I AEN+ H+VELEA T ++GT L APT E GL  AC D+C G+L L+IWE+   GSKGK+IL+ KS MAA+E+GGGPWF TWKG T+ TPE+LK ALQ
Sbjct:  215 RTDYAETVKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDGKMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQALQ 468

HSP 2 Score: 176.792 bits (447), Expect = 1.975e-45
Identity = 78/119 (65.55%), Postives = 97/119 (81.51%), Query Frame = -2

Query: 2825 TSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3181
            T ++ +D+ +SV PVYVPT  NR+ RTPHSGYHFDGT R+FFEGWYF+VSIPE+++SFCFMYSVENP FR+ L+ LE   +GPRFTGVGAQILGA D+Y+CQY  +S NFWG +   +L
Sbjct:   52 TPNSETDK-ISVKPVYVPTSPNRELRTPHSGYHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGAQILGANDKYLCQYEQDSHNFWGDRHELVL 169

HSP 3 Score: 83.5741 bits (205), Expect = 3.120e-15
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL+LGNTF A   ++ P+KEVPPEEFNR+V EGFQ +P WHQG I DDGR
Sbjct:  164 RHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQGHICDDGR 215

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: TOCC_ORYSJ (Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE1 PE=2 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 4.373e-121
Identity = 177/254 (69.69%), Postives = 209/254 (82.28%), Query Frame = -3

Query:  688 NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTAL 1449
            + R+ Y   V+ ARWEYSTRP YGWGDV SKQKSTAGWLAAFP FEPHWQICMA GLSTGWIEWDGERFEF++APSYSEKNWG GFPRKW+W QCNVF GASG+++LT AGGLR++ GL ET+E+ +LIG+HY+G FYEFVPW G V+W+IA WG+W ++ ENK HLVE+EATT + GT L APT+EAGL PAC DTC GDL L++WEK   G KGK+ILD  S+MAALEVGGGPWFN WKG T + E++   +
Sbjct:  198 DGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKI-GLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVV 450

HSP 2 Score: 167.933 bits (424), Expect = 1.469e-42
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = -2

Query: 2825 PVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3142
            PVY PTP +R  RTPHSGYH+DGT R FFEGWYFKVSIPE +QSFCFMYSVENP+FR  ++ L+ + HG RFTGVGAQILGA D+YICQ++++S NFWGS+   +L
Sbjct:   49 PVYAPTPRDRALRTPHSGYHYDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDRVIHGSRFTGVGAQILGADDKYICQFTEKSNNFWGSRHELML 154

HSP 3 Score: 92.4337 bits (228), Expect = 4.786e-18
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = -2

Query: 1919 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGRCLLLLN 2092
            RHEL+LGNTF+ N  S PP  EVPP+EF+ +VLEGFQV+P+WHQGFIRDDGR   + N
Sbjct:  149 RHELMLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPN 206

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: TOCC_MAIZE (Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 1.719e-119
Identity = 176/244 (72.13%), Postives = 206/244 (84.43%), Query Frame = -3

Query:  718 NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKT 1449
            + R++Y   V+ ARWEYSTRP YGWGDV SKQ STAGWLAAFP FEPHWQICMA GLSTGWIEWDGERFEF++APSYSEKNWGGGFPRKW+W QCNVF GASG++SLT AGGLR++ GL +T+E+ +LIG+HY+G F+EFVPW G V+W+I  WG W ++ ENKTHLVE+EATT +SGT L APT+EAGL PAC DTC GDL L++WEK   GSKG++ILD  S+MAALEVGGGPWFN WKG T
Sbjct:  202 DGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMARGLSTGWIEWDGERFEFENAPSYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRKI-GLGDTYESPSLIGIHYEGQFFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAESGTALRAPTIEAGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNGWKGTT 444

HSP 2 Score: 169.088 bits (427), Expect = 6.004e-43
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = -2

Query: 2825 VSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3154
             +  P+Y PTP +R  RTPHSGYHFDGT R FFEGWYFKVSIPE +QSFCFMYSVENP+FR  ++ L+ L + PRFTGVGAQILGA D+YICQ+S++S NFWGS+   +L
Sbjct:   49 AAAAPIYTPTPQDRSLRTPHSGYHFDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYICQFSEKSNNFWGSRHELML 158

HSP 3 Score: 93.5893 bits (231), Expect = 1.926e-18
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL+LGNTF++NK S PP  EVPP++F+R+VLEG QV+P+WHQGFIRDDGR
Sbjct:  153 RHELMLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQGFIRDDGR 204

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR6_ARATH (Protein NRT1/ PTR FAMILY 1.2 OS=Arabidopsis thaliana GN=NPF1.2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.917e-39
Identity = 69/152 (45.39%), Postives = 101/152 (66.45%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGIIIAVTYSLDSFAVIQTSTMDRHIT---PKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
            CT D+VEELKALI+VIP+WSTGI++++  S  SF ++Q ++MDR ++     F +PAGSFG   II   + + LYDR ++PLA K++G P  LS K RM  GL  S  AM    +V+  RR+ AI +G ++   A+V ISA+W++P  ++ G
Sbjct:  320 CTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHG 471

HSP 2 Score: 43.8986 bits (102), Expect = 2.917e-39
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 1

Query:   34 LRFLNKACVIKNPQQDLTSDGNASNPWSL 120
            LRFLNKAC+I N ++++ SDG A NPW L
Sbjct:  291 LRFLNKACLISNREEEIGSDGFALNPWRL 319

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR32_ARATH (Protein NRT1/ PTR FAMILY 1.1 OS=Arabidopsis thaliana GN=NPF1.1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 5.748e-39
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGIIIAVTYSLDSFAVIQTSTMDRHITPK--FDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
            CT D+VE+LKAL++VIPVWSTGI++++  S +SF ++Q  +MDR ++    F IPAGSFG   II  +  + LYDR ILPLA K++G PV ++ K RM  GL  S  AM     V++ RR+ AI +GL++   + V ISA+W++P  ++ G
Sbjct:  321 CTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHG 471

HSP 2 Score: 40.4318 bits (93), Expect = 5.748e-39
Identity = 19/29 (65.52%), Postives = 20/29 (68.97%), Query Frame = 1

Query:   34 LRFLNKACVIKNPQQDLTSDGNASNPWSL 120
            LRFLNKAC I N  +DL SDG A N W L
Sbjct:  292 LRFLNKACAISNRDEDLGSDGLALNQWRL 320

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR48_ARATH (Protein NRT1/ PTR FAMILY 1.3 OS=Arabidopsis thaliana GN=NPF1.3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.139e-24
Identity = 65/165 (39.39%), Postives = 97/165 (58.79%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGIIIA-VTYSLDSFAVIQTSTMDRH-ITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSGWVRISLELDRQNSF 610
            C + +VE+LK+LI VIP+WSTGII++ VT    SF V+Q  TMDRH     F+IP GS+G  ++I+F++ + LYD +I+PL      EP  L    RM  G + S   + +L   +Y RR+ A       + ++   +SA+W+LPY I+ G +  +L    QN F
Sbjct:  242 CRVQQVEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFIQGFEIPPGSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCISALAATEYARRKTA-------RDESGTKLSAMWLLPYMILGG-IAEALNTIAQNEF 398

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR18_ARATH (Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thaliana GN=NPF3.1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.448e-22
Identity = 56/159 (35.22%), Postives = 89/159 (55.97%), Query Frame = 2

Query:   95 AMLQTHGVFCTIDRVEELKALIRVIPVWSTGIIIAVTYSLD-SFAVIQTSTMDRHITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
              +  H    T+ RVEELK++IR+ P+ ++GI++   Y+   +F++ Q  TM+RH+T  F IPAGS      +  +  I  YDR+ + +A K  G    ++F  RM  G + S  A +    V+  R+ +AI+ GL DKP  +V IS LW++P   + G
Sbjct:  311 GQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHG 469

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR21_ARATH (Protein NRT1/ PTR FAMILY 2.13 OS=Arabidopsis thaliana GN=NPF2.13 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.707e-21
Identity = 52/150 (34.67%), Postives = 87/150 (58.00%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGII-IAVTYSLDSFAVIQTSTMDRHITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
            C++  VEE+K LIR++P+WS GII +A   +  +F V Q   MDR++ PKF+IPAGS     ++T  + +  YDR+ +P   ++ G    ++  QR+ TG++ +  +M+   +V+ +RR  +I  G    P  M  +S  W+ P  I+ G
Sbjct:  350 CSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMG 496

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR46_ARATH (Protein NRT1/ PTR FAMILY 5.4 OS=Arabidopsis thaliana GN=NPF5.4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.115e-20
Identity = 54/150 (36.00%), Postives = 91/150 (60.67%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGIIIAVTYS-LDSFAVIQTSTMDRHITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
            CT+++VEE+K ++R+IP+W + I+   T + L++F + Q S MDR I   F IP  +F + V +T ++ I LYDR+ +P+  K+      ++  QR+  GL  +   MV   +V+  R ++A   GL D P+ +V +S+LW+LP  I+ G
Sbjct:  296 CTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVG 445

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Match: PTR9_ARATH (Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana GN=NPF5.10 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.407e-20
Identity = 50/150 (33.33%), Postives = 89/150 (59.33%), Query Frame = 2

Query:  122 CTIDRVEELKALIRVIPVWSTGIIIAVTYSLD-SFAVIQTSTMDRHITPKFDIPAGSFGASVIITFVVGIALYDRIILPLALKMKGEPVCLSFKQRMETGLLCSCAAMVSLTVVKYIRREIAIQEGLSDKPQAMVHISALWILPYAIMSG 568
            C+ID +EE K+++R+ P+W T ++ AV ++   +F   Q +TM+R ITP + I   +  + + ++ V+ I +YDR+++P+A     +P  ++  QR+ TG+  S  AMV   +V+  R + A   GL D P A V +S  W++P  ++ G
Sbjct:  305 CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATLQSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDSPDATVPMSVWWLVPQYVLFG 454

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A072V2G5_MEDTR (Tocopherol cyclase OS=Medicago truncatula GN=MTR_3g110160 PE=4 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 8.013e-134
Identity = 205/276 (74.28%), Postives = 230/276 (83.33%), Query Frame = -3

Query:  688 KLLSRYQLFR*SCLLGLGFNC---RTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTAL 1506
            K+L  +Q+   + L   GF C   R+ Y  TVK ARWEYSTRP YGWGDVGS QKSTAGWLAAFP+FEPHWQICMA GLSTGWIEWDGER EF++APSYSEKNWGG FPRKWFWAQCNVFEGASG+I+LT AGGLRQ+PGLTETFEN ALIG+HY G FYEFVPWNGVV+WE+A WGYW ++A+N  ++VELEATT D GTTL APT EAGL+ AC DTC G L LK+WE+   GSKGK+ILDV SDMAALEVGGGPWFNTWKGKT+TP VL  A+
Sbjct:  186 KVLEGFQV---TPLWNQGFICDDGRSDYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFENAPSYSEKNWGGAFPRKWFWAQCNVFEGASGEIALTAAGGLRQIPGLTETFENAALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTEDPGTTLRAPTSEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGPWFNTWKGKTSTPPVLSRAI 458

HSP 2 Score: 180.644 bits (457), Expect = 9.143e-45
Identity = 81/118 (68.64%), Postives = 95/118 (80.51%), Query Frame = -2

Query: 2825 SSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3178
            S T   +  S  P+Y PTP NR  RTPHSGYHFDGT R+FFEGWYFKVSIPE++QSFCFMYSVENP FR++L+ LE  Q+GPRFTGVGAQILGA D+YICQY+ +S NFWGS+   +L
Sbjct:   44 SHTEQQQSQSSKPIYSPTPPNRQLRTPHSGYHFDGTARKFFEGWYFKVSIPEKRQSFCFMYSVENPAFRKELSTLELAQYGPRFTGVGAQILGADDKYICQYTPQSPNFWGSRNELML 161

HSP 3 Score: 91.6633 bits (226), Expect = 7.395e-16
Identity = 40/52 (76.92%), Postives = 48/52 (92.31%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            R+EL+LGNTF A +NS+PP+KEVPP+EFN KVLEGFQV+PLW+QGFI DDGR
Sbjct:  156 RNELMLGNTFAAKQNSKPPNKEVPPKEFNDKVLEGFQVTPLWNQGFICDDGR 207

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: V4WBX6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008169mg PE=4 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 8.874e-134
Identity = 198/258 (76.74%), Postives = 224/258 (86.82%), Query Frame = -3

Query:  670 RTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQNSPPD 1443
            RT++  TVK+ARWEYSTRP YGWG+VGSKQ STAGWLAAFP+FEPHWQICMA GLSTGWIEWDGERFEFQDAPSYSEKNWGG FPRKWFW QCNVFEGA+G+++LT  GGLRQLP L ++FEN A+IG+HYDGI YEFVPWNGVV+WEI+QWGYW  AAEN+TH+VEL+ATT   GTTL APT EAGL PAC DTC G+LTL++WE+   G+KGK+ILDV SDMAALEVGGGPWFNTWK KT TPE+L+  L N P D
Sbjct:  205 RTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTNYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTL-NVPVD 460

HSP 2 Score: 188.348 bits (477), Expect = 1.814e-47
Identity = 84/119 (70.59%), Postives = 98/119 (82.35%), Query Frame = -2

Query: 2825 TSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3181
             SS  +   VSVNPVY PTP NR+ RTPHSGYHFDG+TR+FFEGWYF+VSIPERKQSFC +YSVENP F++KL+ LE  QHGPRFTGVG QILGA D+Y+C YS+ES NFWGS+   +L
Sbjct:   41 ASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELML 159

HSP 3 Score: 93.9745 bits (232), Expect = 1.278e-16
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL+LGNTF A+K S+PP+KEVPP+EFNR+V EGFQV+PLWHQG I DDGR
Sbjct:  154 RHELMLGNTFRADKGSQPPTKEVPPQEFNRRVSEGFQVTPLWHQGCIHDDGR 205

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A067GWH1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011258mg PE=4 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 1.613e-133
Identity = 198/260 (76.15%), Postives = 225/260 (86.54%), Query Frame = -3

Query:  670 NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQNSPPD 1449
            + RT++  TVK+ARWEYSTRP YGWG+VGSKQ STAGWLAAFP+FEPHWQICMA GLSTGWIEWDGERFEFQDAPSYSEKNWGG FPRKWFW QCNVFEGA+G+++LT  GGLRQLP L ++FEN A+IG+HYDGI YEFVPWNGVV+WEI+QWGYW  AAEN+TH+VEL+ATT   GTTL APT EAGL PAC DTC G+LTL++WE+   G+KGK+ILDV SDMAALEVGGGPWFNTWK KT TPE+L+  L N P D
Sbjct:  203 DGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTL-NVPVD 460

HSP 2 Score: 188.348 bits (477), Expect = 2.071e-47
Identity = 84/119 (70.59%), Postives = 98/119 (82.35%), Query Frame = -2

Query: 2825 TSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3181
             SS  +   VSVNPVY PTP NR+ RTPHSGYHFDG+TR+FFEGWYF+VSIPERKQSFC +YSVENP F++KL+ LE  QHGPRFTGVG QILGA D+Y+C YS+ES NFWGS+   +L
Sbjct:   41 ASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELML 159

HSP 3 Score: 96.6709 bits (239), Expect = 1.708e-17
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL+LGNTF A+K S+PP+KEVPP+EFNR+VLEGFQV+PLWHQG I DDGR
Sbjct:  154 RHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGR 205

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: A0A067GM79_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011258mg PE=4 SV=1)

HSP 1 Score: 426.787 bits (1096), Expect = 2.785e-133
Identity = 198/260 (76.15%), Postives = 225/260 (86.54%), Query Frame = -3

Query:  670 NCRTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKNVGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQNSPPD 1449
            + RT++  TVK+ARWEYSTRP YGWG+VGSKQ STAGWLAAFP+FEPHWQICMA GLSTGWIEWDGERFEFQDAPSYSEKNWGG FPRKWFW QCNVFEGA+G+++LT  GGLRQLP L ++FEN A+IG+HYDGI YEFVPWNGVV+WEI+QWGYW  AAEN+TH+VEL+ATT   GTTL APT EAGL PAC DTC G+LTL++WE+   G+KGK+ILDV SDMAALEVGGGPWFNTWK KT TPE+L+  L N P D
Sbjct:  217 DGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDGILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTL-NVPVD 474

HSP 2 Score: 188.348 bits (477), Expect = 2.644e-47
Identity = 84/119 (70.59%), Postives = 98/119 (82.35%), Query Frame = -2

Query: 2825 TSSTASDRPVSVNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLL 3181
             SS  +   VSVNPVY PTP NR+ RTPHSGYHFDG+TR+FFEGWYF+VSIPERKQSFC +YSVENP F++KL+ LE  QHGPRFTGVG QILGA D+Y+C YS+ES NFWGS+   +L
Sbjct:   41 ASSAQTVGGVSVNPVYKPTPRNRELRTPHSGYHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELML 159

HSP 3 Score: 87.0409 bits (214), Expect = 2.350e-14
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPE--------------EFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL+LGNTF A+K S+PP+KEVPP+              EFNR+VLEGFQV+PLWHQG I DDGR
Sbjct:  154 RHELMLGNTFRADKGSQPPTKEVPPQVRGSYLLLHGFSWQEFNRRVLEGFQVTPLWHQGCIHDDGR 219

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Match: Q2XV81_HELAN (Tocopherol cyclase OS=Helianthus annuus GN=TC PE=4 SV=1)

HSP 1 Score: 425.246 bits (1092), Expect = 8.955e-133
Identity = 202/268 (75.37%), Postives = 222/268 (82.84%), Query Frame = -3

Query:  646 RTSYTRTVKAARWEYSTRPTYGWGDVGSKQKSTAGWLAAFPIFEPHWQICMASGLSTGWIEWDGERFEFQDAPSYSEKNWGGGFPRKWFWAQCNVFEGASGKISLTTAGGLRQLPGLTETFENTALIGVHYDGIFYEFVPWNGVVTWEIAQWGYWNIAAENKTHLVELEATTTDSGTTLLAPTVEAGLTPACLDTCLGDLTLKIWEKN--VGGSKGKLILDVKSDMAALEVGGGPWFNTWKGKTTTPEVLKTALQNSPPDFRKRLLTF 1443
            RTSY  TVK ARWEYSTRP YGWGDVGSKQKSTAGWLAAFP+FEPHWQICMA GLSTGWIEW  ER+EF+DAPSY EKNWGGGFPRKWFW QCNVF+GASG++ LT  GGLRQLPGL ETFEN ALIGVH+ GIFYEFVPWNGVV WE+A+WGYW++ A+N+TH VELEA+T D GTTL APT EAGL PAC DTC   LTLK+WEK      + GKLILDV S+MAA+EVGGGPWFNTWKGKT TPEV+  AL N P D    L +F
Sbjct:  209 RTSYAETVKTARWEYSTRPVYGWGDVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWGDERYEFEDAPSYCEKNWGGGFPRKWFWVQCNVFKGASGEVGLTCGGGLRQLPGLNETFENAALIGVHHGGIFYEFVPWNGVVEWEVAEWGYWHVTAQNETHKVELEASTKDPGTTLRAPTTEAGLAPACKDTCFAHLTLKLWEKGSAAAAADGKLILDVTSNMAAVEVGGGPWFNTWKGKTYTPEVINRAL-NLPVDVDGILGSF 475

HSP 2 Score: 196.823 bits (499), Expect = 2.893e-50
Identity = 88/118 (74.58%), Postives = 102/118 (86.44%), Query Frame = -2

Query: 2795 VNPVYVPTPANRDTRTPHSGYHFDGTTRQFFEGWYFKVSIPERKQSFCFMYSVENPVFRRKLTQLETLQHGPRFTGVGAQILGAYDEYICQYSDESQNFWGSKFSTLLVSSDFNLRTG 3148
            VNPVYVPTP NR  R PHSGYHFDGTTR+FFEGWYFKVSIPE++QSFCFMYSVENP F++ L  LE LQHGPRFTGVGAQILGA+D+YICQYS ES NFWGS+   L++ + F+++TG
Sbjct:   56 VNPVYVPTPTNRPLRPPHSGYHFDGTTRKFFEGWYFKVSIPEQRQSFCFMYSVENPAFKKDLNILEQLQHGPRFTGVGAQILGAHDKYICQYSKESHNFWGSRHE-LMLGNSFSVQTG 172

HSP 3 Score: 86.6557 bits (213), Expect = 3.202e-14
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = -2

Query: 1937 RHELILGNTFLANKNSRPPSKEVPPEEFNRKVLEGFQVSPLWHQGFIRDDGR 2092
            RHEL+LGN+F      +PP+ EVPP+ FN++V+EGFQV+PLWHQGFIRDDGR
Sbjct:  158 RHELMLGNSFSVQTGKQPPNSEVPPQVFNQRVIEGFQVTPLWHQGFIRDDGR 209

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
TOCC_ARATH	1.015e-128	74.41	Tocopherol cyclase, chloroplastic OS=Arabidopsis t...	[more]
TOCC_ORYSJ	4.373e-121	69.69	Probable tocopherol cyclase, chloroplastic OS=Oryz...	[more]
TOCC_MAIZE	1.719e-119	72.13	Probable tocopherol cyclase, chloroplastic OS=Zea ...	[more]
PTR6_ARATH	2.917e-39	45.39	Protein NRT1/ PTR FAMILY 1.2 OS=Arabidopsis thalia...	[more]
PTR32_ARATH	5.748e-39	46.36	Protein NRT1/ PTR FAMILY 1.1 OS=Arabidopsis thalia...	[more]
PTR48_ARATH	4.139e-24	39.39	Protein NRT1/ PTR FAMILY 1.3 OS=Arabidopsis thalia...	[more]
PTR18_ARATH	1.448e-22	35.22	Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thalia...	[more]
PTR21_ARATH	2.707e-21	34.67	Protein NRT1/ PTR FAMILY 2.13 OS=Arabidopsis thali...	[more]
PTR46_ARATH	1.115e-20	36.00	Protein NRT1/ PTR FAMILY 5.4 OS=Arabidopsis thalia...	[more]
PTR9_ARATH	6.407e-20	33.33	Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thali...	[more]

Pages

BLAST of g.barbadense_cottongen_reftransV1_0091728 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A072V2G5_MEDTR	8.013e-134	74.28	Tocopherol cyclase OS=Medicago truncatula GN=MTR_3...	[more]
V4WBX6_9ROSI	8.874e-134	76.74	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067GWH1_CITSI	1.613e-133	76.15	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067GM79_CITSI	2.785e-133	76.15	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
Q2XV81_HELAN	8.955e-133	75.37	Tocopherol cyclase OS=Helianthus annuus GN=TC PE=4...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025893	Tocopherol cyclase	PFAM	PF14249	Tocopherol_cycl	coord: 1..181 e-value: 1.2E-72 score: 244.8
None	No IPR available	PANTHER	PTHR35309	FAMILY NOT NAMED	coord: 1..203
None	No IPR available	PANTHER	PTHR35309:SF2	TOCOPHEROL CYCLASE, CHLOROPLASTIC	coord: 1..203

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0091728 ID=g.barbadense_cottongen_reftransV1_0091728; Name=g.barbadense_cottongen_reftransV1_0091728; organism=Gossypium barbadense; type=contig; length=3467bp
GGGAATAAAGTAACTGAAAATGGTCTCATTTCACTAAGGTTTCTGAATAA
AGCTTGTGTGATAAAGAACCCTCAACAGGACTTAACCTCTGATGGCAATG
CTTCAAACCCATGGAGTCTTTTGTACAATAGATCGAGTGGAAGAGCTGAA
AGCGTTAATCAGAGTGATACCGGTCTGGTCTACGGGAATCATAATCGCTG
TGACATATTCTTTGGATTCTTTTGCAGTTATTCAAACAAGTACCATGGAC
CGACATATAACTCCAAAGTTTGATATTCCAGCAGGTTCATTTGGTGCGTC
TGTGATCATCACTTTTGTAGTAGGGATTGCTTTGTATGATCGGATAATTC
TTCCTTTAGCATTAAAAATGAAAGGGGAACCGGTTTGTCTTAGTTTTAAG
CAAAGAATGGAGACCGGACTTCTTTGCTCTTGTGCAGCCATGGTTTCATT
AACAGTTGTGAAGTATATTCGACGAGAAATTGCAATCCAAGAAGGGCTTT
CGGATAAACCACAAGCCATGGTGCACATTTCTGCACTATGGATTCTGCCA
TATGCTATCATGTCCGGCTGGGTTCGGATTTCATTGGAATTGGACAGACA
GAATTCTTTTACTCTGAACCATGTCCAGTGTTGCAGCCAATCTTCAAATG
TTAGGAGCCTCTTCCGGAAGTCTGGTGGTGAGTTCTGAAGAGCAGTTTTA
AGGACCTCTGGTGTAGTGGTCTTCCCTTTCCAAGTGTTGAACCATGGCCC
TCCTCCTACTTCTAGTGCCGCCATGTCACTTTTAACATCCAAGATCAGCT
TGCCTTTACTGCCACCAACATTTTTTTCCCAGATCTTCAATGTTAGATCA
CCTAAACAAGTGTCTAAACAAGCTGGAGTAAGACCAGCCTCTACTGTTGG
AGCAAGCAATGTCGTACCTGAATCAGTTGTTGTTGCCTCTAACTCAACCA
AGTGTGTTTTGTTTTCTGCAGCAATGTTCCAGTAACCCCACTGGGCAATT
TCCCAAGTTACAACACCATTCCATGGCACAAATTCATAGAAAATTCCATC
ATAGTGCACTCCAATCAATGCAGTATTTTCGAAGGTCTCAGTCAGTCCAG
GCAGCTGCCTTAATCCACCAGCCGTGGTCAGAGAAATTTTTCCGCTAGCA
CCTTCAAAGACGTTACATTGAGCCCAAAACCATTTTCTAGGGAAGCCTCC
ACCCCAATTCTTTTCTGAATATGAAGGGGCATCTTGAAACTCAAACCTTT
CACCATCCCACTCTATCCAGCCTGTTGAAAGTCCACTGGCCATGCAAATT
TGCCAATGGGGTTCGAATATGGGAAAAGCTGCAAGCCAGCCAGCTGTTGA
CTTCTGCTTGGACCCAACATCACCCCATCCATAGGTGGGGCGAGTACTGT
ACTCCCAACGTGCAGCTTTAACAGTTCTTGTATAAGATGTCCTGCAATTA
AAACCTAAACCAAGTAAACAGGATTACCGAAATAACTGATAGCGACTGAG
AAGTTTTGCTCAATTCTAATTTTGAGAACCTAAAAAGTAACAAATCACAA
CATAGACATTTGAATGAAAATAGGAATGGATCTTGATAGAAGAACCACTT
CTTTTCTGATGGCATGTTTGTTATGCCAACGGTTATACAAGGGAGATCAC
TATGCAGAAAGAATGCCTCAACAAGGGGGCATAGGAAAATCATCAAAATA
GCAATTTTTTAATCTTCTCGTAAAGGAATAACACTATTAATTCTTCTGGG
ATATCAATAAAAGGATATTTTGTTTCTTCACAGCATGACAAATAAGTCTA
GTGCACATTCACTGCTAATTAAATGCTTTACTTCTCTGTAGAAAGGAGCA
AAAACGACCATAGAATACAACAAAGTAAGGGTTTATTACATATGTTTATA
TTAAAATCATGCTTATGGATTCAACAAGAGGAGGCACCTGCCATCATCAC
GAATAAAGCCTTGATGCCAAAGTGGGCTAACTTGAAAGCCCTCCAAAACT
TTTCTATTGAATTCCTCAGGAGGGACCTCCTTACTTGGAGGTCGTGAGTT
TTTGTTGGCTAAAAAAGTATTCCCCAATATCAGCTCATGCCTGCCTATGC
ATTAAAAAGTTATAAATTAGGCATAGAACGTCACTCAATTATGCATTTCA
TCACTGCACTATTAAGGTATAAACTTGAGAAACACCAAAAGACATATGAT
GATAAGAGTAAAATAAATATAGCTAATAACTAAATAGATACAACTGCACT
CAGTAATAAACATGAAGCTTGGAGAACCAAAGACTTTCTAGCGAGAGGCC
AAAATAAAATAAATTTGAATGGCCCAAAATTAGAAGTTTAAAACAACCGA
AAAGGATCTTTGAAACCTGAGACAAACCAGATATCAGAAAGGTTTTGAAT
TGCTAAAGTCTAACAAGACCAAAAGATTAAGTGACGATGGTGCATAAAAA
TGAATGAAACATCATAGTGCAATAAAATGCAGAGGGTGAAGTGAATTAAA
ATCAAGTTAAATTAATGTATCAACATTTAATTAGAAAGTTCAGGTTAAAT
GCCTGAGAACATATTCATATAGATTAACTTTCTATCTTGCTAGATATCCA
AGAACAATTATAGGAGATAGCTTCCCACCATAAATGCTAGCTTCCTCAAA
AGGTAATATGATAAAATTTTCTACGATGAAGTCAACAAGTAGTTAATCGA
GCAGCAACTATACAAAATAAGTGTCTTTTACACCCAGTAGATTGTAGTTT
CATTACTACATAATCAATCAGGTGCAATGGGCGGCTGTAATAAGACCAGT
CCTTAGATTAAAATCTGATGAAACCAATAAAGTAGAAAACTTACTTCCCC
AAAAGTTCTGAGATTCATCACTGTATTGGCATATATACTCGTCATAAGCA
CCAAGGATTTGTGCCCCAACTCCTGTAAATCTAGGTCCGTGCTGCAGTGT
TTCCAATTGGGTCAGTTTCCTCCTAAATACGGGATTCTCCACCGAGTACA
TGAAGCAAAAGCTCTGTTTTCGTTCTGGGATTGATACCTTAAAGTACCAA
CCCTCAAAAAATTGTCGAGTGGTTCCATCAAAGTGGTACCCGCTGTGAGG
AGTTCGAGTGTCTCGATTAGCCGGCGTGGGAACATAAACCGGATTGACAG
AGACGGGTCTATCGGATGCCGTAGAAGAAGTTTCGGTATCAGTCCCAGCG
ATGGAGCTGCATGCGATGATCGGCGAGTTCGATCGAAACCCTAACCTGAG
AGGGCGGAGGCGTCTAGGAAATAGTCCATTGAAGTTAGAAGATTGGGATA
ATTTAACGGGGGTTTTGGAGTTTAGAGAACGAAGACCAATATAACAAGAA
GAGAAATGGCGAAGCTCGTTGATAGAGTTGAGGGTTGGAAGGAAAGGGGA
AGAAGAATGAAAAAAAGAAGATGCTTCAGACGTGAGAATGAAAAAGAGGT
AGAAGGGTAAAGTTGAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR025893	Tocopherol_cyclase

Vocabulary: **Molecular Function**
Term	Definition
GO:0009976	tocopherol cyclase activity

Search form

g.barbadense_cottongen_reftransV1_0091728, g.barbadense_cottongen_reftransV1_0091728 (contig) Gossypium barbadense

Pages

Pages