g.barbadense_cottongen_reftransV1_0091723, g.barbadense_cottongen_reftransV1_0091723 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A068V8I3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_144 OS=Coffea canephora GN=GSCOC_T00005014001 PE=4 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.329e-55 Identity = 79/123 (64.23%), Postives = 93/123 (75.61%), Query Frame = -2 Query: 524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACG-VDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889 W+ W YPIYRIPMGPTL++LDASFLTFH LST ++S +Q ++ SSSRK D SS ISLPVFGLASYKL+GSIL P G E +Q +SLLQAA +WLQ LQV PD+QFF +H SQWR Sbjct: 310 WISVAW--YPIYRIPMGPTLRDLDASFLTFHYLSTHTRSNSQPQFHGSSSRKVHPFADASSKISLPVFGLASYKLKGSILNPCGPHECEQENSLLQAAGDWLQQLQVALPDYQFFRAHYSQWR 430 HSP 2 Score: 110.538 bits (275), Expect = 3.329e-55 Identity = 76/127 (59.84%), Postives = 87/127 (68.50%), Query Frame = -1 Query: 951 TIRRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHH-----NSQRTN------GSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1298 TIRRT + DAESSRE SS GSSD E D+R K +G R H NS+R N S S+SSD+ E+ S G L+FEY EQEQPH RKPL DKIS LASQFPE+R RSC+LLP+SWISVAW Sbjct: 191 TIRRTCEESDAESSRENSSCGSSDCEADKRSKA--EGLRNQHLLANLNSRRLNRLSLREKSVTSSSSDDAEICNSPGQLMFEYLEQEQPHRRKPLVDKISVLASQFPELRKCRSCDLLPSSWISVAW 315 HSP 3 Score: 162.925 bits (411), Expect = 1.837e-39 Identity = 91/185 (49.19%), Postives = 117/185 (63.24%), Query Frame = -1 Query: 2094 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAET--------RADSDDS-----TLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2609 GG+AV+R+ DRFYNPPA+RRH+Q+ +Q + + +++ + + DS A R DSDDS S S P +TNLDR +ESVTPF+ AH SEA + + T+E +L +Y LGDLWE F+EWSVYGVGVPLLLNG D VKQYYVP+LSG+QLYVDP +PR Sbjct: 5 GGFAVSRSHGGDRFYNPPAMRRHRQMILQQQQQQLQHLQRQQQLAQLQRASKSDSAATAATSPDAGNRTDSDDSLPTLSKPSSVRSPSPPIPPAPSVTNLDRFLESVTPFITAHHSSEAYARVRRTKEAELHPFYCLGDLWESFNEWSVYGVGVPLLLNGKDHVKQYYVPFLSGIQLYVDPLKPR 189
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: M1D4L0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031798 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 8.315e-51 Identity = 74/123 (60.16%), Postives = 91/123 (73.98%), Query Frame = -2 Query: 524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACG-VDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889 W+ W YPIYRIPMGPTL++LDASFLTFH+LST QS+ Q Y ++ RK G V+ S ISLPVFGLA+YKL+ SIL+PGG ES+Q +SLLQ AD+WL+ L V PD+QFF H S W+ Sbjct: 301 WISVAW--YPIYRIPMGPTLRDLDASFLTFHTLST--QSRVQPRYHGATGRKVLGNVNACSRISLPVFGLATYKLKTSILSPGGPHESEQENSLLQNADSWLRRLHVILPDYQFFRMHYSPWK 419 HSP 2 Score: 105.916 bits (263), Expect = 8.315e-51 Identity = 70/126 (55.56%), Postives = 84/126 (66.67%), Query Frame = -1 Query: 951 IRRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHH-----NSQRTNGSPMS------TSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1295 + R + GDAESSRE SS GSSD E +RR DG R H N+QR N +S +SSDE E+ KS G L+FEY E EQPHHR+PL DKI+ LASQFPE++ RS +LLP+SWISVAW Sbjct: 181 VSRPGEEGDAESSRETSSGGSSDCEVERRSISSSDGLRNQHSLVNLNAQRLNRLSLSDKAVTVSSSDETEISKSPGQLMFEYLEHEQPHHRRPLADKIAVLASQFPELKTCRSADLLPSSWISVAW 306 HSP 3 Score: 165.622 bits (418), Expect = 2.037e-40 Identity = 96/177 (54.24%), Postives = 119/177 (67.23%), Query Frame = -1 Query: 2097 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDST----LSRRNSVCYSSPN--IAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQP 2609 G +AV+R+ DRFYNPPA+RR QQLQ++Q + ++ V + R DSDDST LS+ SVC +SP +TNLDRLMESVTPFVPA FS ++G+ RE + LYY LGDLWE F+EWSVYGVGVP+LLNG DS+ QYYVP+LSG+QLYVDP +P Sbjct: 5 GSFAVSRSHGADRFYNPPAMRRQQQLQKQQQQ----QQRPPVQRAAKAEAAVVAAEVGNRTDSDDSTNTTTLSKTPSVCSASPPRPPINVTNLDRLMESVTPFVPAQHFSVVNVRGRRAREAEPNLYYCLGDLWEAFNEWSVYGVGVPILLNGKDSIIQYYVPFLSGIQLYVDPSKP 177
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: B9SAW8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1179910 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.416e-50 Identity = 69/118 (58.47%), Postives = 83/118 (70.34%), Query Frame = -2 Query: 536 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHN 889 W+ W YPIYRIPMGP LQNLDASFLTFHSLST S+SKN +++ ++R A G+ SS +LPVFGLASYKL+GSILT G +++ NWLQ L+V PDFQFF SHN Sbjct: 228 WVSIAW--YPIYRIPMGPMLQNLDASFLTFHSLSTHSRSKNPIQFDMLNARTAYGMVSSSKTALPVFGLASYKLQGSILTSGEWEQASSLLQAAV---NWLQHLEVNSPDFQFFASHN 340 HSP 2 Score: 99.3673 bits (246), Expect = 1.416e-50 Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = -1 Query: 951 TDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEV------EVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1220 +++ KGG+DG H N +P + + S+GLLVFEY EQEQP RKPLYD +S+LAS+FP+I+ YRSC+L PASW+S+AW Sbjct: 138 AEKQAKGGVDGVWGRHRHNIMNLNPQGLQRLSLRDQNLNNLSSSHGLLVFEYLEQEQPRRRKPLYDTVSTLASEFPDIKTYRSCDLSPASWVSIAW 233
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: M1D4L2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031798 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.627e-50 Identity = 74/123 (60.16%), Postives = 91/123 (73.98%), Query Frame = -2 Query: 524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACG-VDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889 W+ W YPIYRIPMGPTL++LDASFLTFH+LST QS+ Q Y ++ RK G V+ S ISLPVFGLA+YKL+ SIL+PGG ES+Q +SLLQ AD+WL+ L V PD+QFF H S W+ Sbjct: 300 WISVAW--YPIYRIPMGPTLRDLDASFLTFHTLST--QSRVQPRYHGATGRKVLGNVNACSRISLPVFGLATYKLKTSILSPGGPHESEQENSLLQNADSWLRRLHVILPDYQFFRMHYSPWK 418 HSP 2 Score: 104.76 bits (260), Expect = 1.627e-50 Identity = 70/124 (56.45%), Postives = 83/124 (66.94%), Query Frame = -1 Query: 951 RTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHH-----NSQRTNGSPMS------TSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1289 R + GDAESSRE SS GSSD E +RR DG R H N+QR N +S +SSDE E+ KS G L+FEY E EQPHHR+PL DKI+ LASQFPE++ RS +LLP+SWISVAW Sbjct: 182 RPGEEGDAESSRETSSGGSSDCEVERRSISSSDGLRNQHSLVNLNAQRLNRLSLSDKAVTVSSSDETEISKSPGQLMFEYLEHEQPHHRRPLADKIAVLASQFPELKTCRSADLLPSSWISVAW 305 HSP 3 Score: 165.622 bits (418), Expect = 2.158e-40 Identity = 96/177 (54.24%), Postives = 119/177 (67.23%), Query Frame = -1 Query: 2097 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDST----LSRRNSVCYSSPN--IAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQP 2609 G +AV+R+ DRFYNPPA+RR QQLQ++Q + ++ V + R DSDDST LS+ SVC +SP +TNLDRLMESVTPFVPA FS ++G+ RE + LYY LGDLWE F+EWSVYGVGVP+LLNG DS+ QYYVP+LSG+QLYVDP +P Sbjct: 5 GSFAVSRSHGADRFYNPPAMRRQQQLQKQQQQ----QQRPPVQRAAKAEAAVVAAEVGNRTDSDDSTNTTTLSKTPSVCSASPPRPPINVTNLDRLMESVTPFVPAQHFSVVNVRGRRAREAEPNLYYCLGDLWEAFNEWSVYGVGVPILLNGKDSIIQYYVPFLSGIQLYVDPSKP 177
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: K4CVC7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g075500.2 PE=4 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 4.812e-50 Identity = 73/125 (58.40%), Postives = 94/125 (75.20%), Query Frame = -2 Query: 524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQL--EYSASSSRKACG-VDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889 W+ W YPIYRIPMGPTL++LDASFLTFH+LST+S++ + + Y ++ RK G V+ S ISLPVFGLA+YKL+ SIL+PGG ES+Q +SLLQAAD+WL+ L V PD+QFF H S W+ Sbjct: 310 WISVAW--YPIYRIPMGPTLRDLDASFLTFHTLSTQSRALSTVHPRYHGATGRKVLGNVNACSRISLPVFGLATYKLKTSILSPGGPHESEQENSLLQAADSWLRRLHVILPDYQFFRMHYSPWK 432 HSP 2 Score: 105.531 bits (262), Expect = 4.812e-50 Identity = 71/126 (56.35%), Postives = 84/126 (66.67%), Query Frame = -1 Query: 951 IRRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHH-----NSQRTN------GSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1295 I R + GDAESSRE SS GSSD E +RR DG R H N+QR N + M +SSDE E+ KS G L+FEY E EQPHHR+PL DKI+ LASQFPE++ RS +LLP+SWISVAW Sbjct: 190 ISRPGEEGDAESSRETSSGGSSDCEVERRSISSSDGLRNQHSLVNLNAQRLNRLSLSDKAVMVSSSDETELSKSLGQLMFEYLEHEQPHHRRPLADKIAFLASQFPELKTCRSADLLPSSWISVAW 315 HSP 3 Score: 165.236 bits (417), Expect = 3.802e-40 Identity = 96/182 (52.75%), Postives = 123/182 (67.58%), Query Frame = -1 Query: 2097 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAE-----TRADSDDST----LSRRNSVCYSSPN--IAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQP 2609 G +AV+R+ DRFYNPPA+RR QQLQ++Q + + +++ V++ R DSDDST LS+ +SVC +SP +TNLDRLMESVTPFVPA FSE ++G+ RE + +YY LGDLWE FSEWSVYGVGVP+LLNG D + QYYVP+LSG+QLYVDP +P Sbjct: 5 GSFAVSRSHGADRFYNPPAMRRQQQLQKQQQQQQQQSQQQQQQRQPVQRAVKVEAAVVAAEVGNRTDSDDSTNTTTLSKTSSVCSASPPRPPINVTNLDRLMESVTPFVPAQHFSEVNVRGRRAREAEPYIYYCLGDLWEAFSEWSVYGVGVPILLNGKDPIIQYYVPFLSGIQLYVDPSKP 186 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0091723 ID=g.barbadense_cottongen_reftransV1_0091723; Name=g.barbadense_cottongen_reftransV1_0091723; organism=Gossypium barbadense; type=contig; length=2981bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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