g.barbadense_cottongen_reftransV1_0091723, g.barbadense_cottongen_reftransV1_0091723 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0091723
Unique Name	g.barbadense_cottongen_reftransV1_0091723
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2981

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At11	chromosome	g.barbadense_cottongen_reftransV1_0091723:1..2981 . At11:12799666..12805903 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A0B0PQW4_GOSAR (Serine/threonine-protein phosphatase 4 regulatory subunit 4 OS=Gossypium arboreum GN=F383_13592 PE=4 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.067e-60
Identity = 120/183 (65.57%), Postives = 137/183 (74.86%), Query Frame = -1

Query: 2085 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLT--------HRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR*AS 2609
            GG+AV RT T DRFYNPPAVRR  QL ++Q          HR L  ELR+    ES VNSVDS++E+R D D+STLS       SSP +A LTNLDRLMESVTP VPA CFSEA+++G  T EV+LR Y+ LGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVP LSG+QL+VD  +PR AS
Sbjct:    5 GGFAVTRTHTEDRFYNPPAVRRQMQLLQQQQLERQQHQQLHRTLQKELRRPLKDESRVNSVDSLSESRTDLDESTLS----AAQSSPEVASLTNLDRLMESVTPLVPAQCFSEAKMRGWRTHEVNLRPYFCLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPSLSGIQLFVDQQRPRRAS 183

HSP 2 Score: 132.494 bits (332), Expect = 9.416e-49
Identity = 81/108 (75.00%), Postives = 84/108 (77.78%), Query Frame = -2

Query:  575 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQS---KNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQ 889
            W+   W  YPIYRIPMGPTLQNLDASFLTFHSLST SQ+   KNQL   ASSSRK CG D SS ISLPVFGLASYKLRGSILT    QE QQASSLL AADNWL  L+
Sbjct:  262 WISVAW--YPIYRIPMGPTLQNLDASFLTFHSLSTHSQTVTGKNQLHSPASSSRKVCGFDASSQISLPVFGLASYKLRGSILTSNCSQEWQQASSLLHAADNWLHGLR 367

HSP 3 Score: 91.6633 bits (226), Expect = 9.416e-49
Identity = 64/114 (56.14%), Postives = 74/114 (64.91%), Query Frame = -1

Query:  951 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPMSTSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1292
            RR S+  + ESSRE SSAGSSD ETDRR+KGG+ GAR  HNSQ TN  P S+ SDE+E                          ++SSLASQFP+IRMYRSC+LLPASWISVAW
Sbjct:  180 RRASEDSEVESSRETSSAGSSDCETDRRLKGGVVGAREKHNSQGTNKPPTSSFSDEME--------------------------QVSSLASQFPDIRMYRSCDLLPASWISVAW 267

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A067HGC8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015322mg PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.221e-60
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAADNWL+ LQV  PDFQFF+SH+SQWR
Sbjct:  218 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADNWLRGLQVYLPDFQFFVSHSSQWR 336

HSP 2 Score: 113.235 bits (282), Expect = 1.221e-60
Identity = 72/126 (57.14%), Postives = 84/126 (66.67%), Query Frame = -1

Query:  951 IRRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPM-----------STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1295
            +RR  +  DAESSRE S AGSSD E +RR KG     +   N    N   +           S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:   98 LRRPGEDSDAESSRETSGAGSSDCEAERRAKGVACATQGQQNLMNVNLQILNRLTLRDKPTRSSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 223

HSP 3 Score: 90.5077 bits (223), Expect = 4.547e-16
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = -1

Query: 2094 EAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2297
            + ++K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP + R
Sbjct:   32 QTRMKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDPCRLR 99

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A067H514_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015322mg PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.685e-60
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAADNWL+ LQV  PDFQFF+SH+SQWR
Sbjct:  285 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADNWLRGLQVYLPDFQFFVSHSSQWR 403

HSP 2 Score: 112.079 bits (279), Expect = 1.685e-60
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = -1

Query:  951 STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1142
            S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:  227 SSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 290

HSP 3 Score: 162.155 bits (409), Expect = 2.110e-39
Identity = 91/168 (54.17%), Postives = 118/168 (70.24%), Query Frame = -1

Query: 2106 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDP 2609
            GG+ V R  + DRFYNPPA+RR QQ  + Q   +       K+  ++S V+SV+  AET AD+D+STL R +SVC +SP    L+NLDRL++SVTP+VP     E ++K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP
Sbjct:    5 GGFTVTRAHSGDRFYNPPAMRRQQQQLQLQRRLQ-------KQLQRKSQVDSVE--AETLADADESTLYRPDSVCSASPRNGDLSNLDRLIDSVTPYVPVQYLPETRMKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDP 163

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: V4TVY9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020424mg PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.680e-60
Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAAD+WL+ LQV  PDFQFF+SH+SQWR
Sbjct:  286 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADDWLRGLQVYLPDFQFFVSHSSQWR 404

HSP 2 Score: 112.849 bits (281), Expect = 2.680e-60
Identity = 72/126 (57.14%), Postives = 84/126 (66.67%), Query Frame = -1

Query:  951 IRRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPM-----------STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1295
            +RR  +  DAESSRE S AGSSD E +RR KG     +   N    N   +           S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:  166 LRRPGEDRDAESSRETSGAGSSDCEAERRAKGVACATQGQQNLMNVNLQILNRLTLRDKPTRSSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 291

HSP 3 Score: 161.77 bits (408), Expect = 2.963e-39
Identity = 91/168 (54.17%), Postives = 118/168 (70.24%), Query Frame = -1

Query: 2106 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDP 2609
            GG+ V R  + DRFYNPPA+RR QQ  + Q   +       K+  ++S V+SV+  AET AD+D+STL R +SVC +SP    L+NLDRL++SVTP+VP     E ++K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP
Sbjct:    5 GGFTVTRAHSGDRFYNPPAMRRQQQQLQLQRRLQ-------KQLQRKSQVDSVE--AETLADADESTLYRLDSVCSASPRNGDLSNLDRLIDSVTPYVPVQYLPETRMKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDP 163

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: V4U693_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020424mg PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.264e-60
Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAAD+WL+ LQV  PDFQFF+SH+SQWR
Sbjct:  285 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADDWLRGLQVYLPDFQFFVSHSSQWR 403

HSP 2 Score: 112.079 bits (279), Expect = 4.264e-60
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = -1

Query:  951 STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1142
            S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:  227 SSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 290

HSP 3 Score: 161.77 bits (408), Expect = 2.937e-39
Identity = 91/168 (54.17%), Postives = 118/168 (70.24%), Query Frame = -1

Query: 2106 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDP 2609
            GG+ V R  + DRFYNPPA+RR QQ  + Q   +       K+  ++S V+SV+  AET AD+D+STL R +SVC +SP    L+NLDRL++SVTP+VP     E ++K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP
Sbjct:    5 GGFTVTRAHSGDRFYNPPAMRRQQQQLQLQRRLQ-------KQLQRKSQVDSVE--AETLADADESTLYRLDSVCSASPRNGDLSNLDRLIDSVTPYVPVQYLPETRMKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDP 163

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: V4U0Y8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020424mg PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.633e-60
Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAAD+WL+ LQV  PDFQFF+SH+SQWR
Sbjct:  280 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADDWLRGLQVYLPDFQFFVSHSSQWR 398

HSP 2 Score: 112.079 bits (279), Expect = 4.633e-60
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = -1

Query:  951 STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1142
            S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:  222 SSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 285

HSP 3 Score: 161.77 bits (408), Expect = 2.508e-39
Identity = 91/168 (54.17%), Postives = 118/168 (70.24%), Query Frame = -1

Query: 2106 GGYAVARTQTRDRFYNPPAVRRHQQLQRKQLTHRPLLSELRKRSDKESGVNSVDSVAETRADSDDSTLSRRNSVCYSSPNIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDP 2609
            GG+ V R  + DRFYNPPA+RR QQ  + Q   +       K+  ++S V+SV+  AET AD+D+STL R +SVC +SP    L+NLDRL++SVTP+VP     E ++K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP
Sbjct:    5 GGFTVTRAHSGDRFYNPPAMRRQQQQLQLQRRLQ-------KQLQRKSQVDSVE--AETLADADESTLYRLDSVCSASPRNGDLSNLDRLIDSVTPYVPVQYLPETRMKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDP 163

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A067H520_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015322mg PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.162e-60
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAADNWL+ LQV  PDFQFF+SH+SQWR
Sbjct:  183 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADNWLRGLQVYLPDFQFFVSHSSQWR 301

HSP 2 Score: 110.923 bits (276), Expect = 6.162e-60
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = -1

Query:  951 STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1142
            S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:  125 SSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 188

HSP 3 Score: 89.7373 bits (221), Expect = 6.410e-16
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = -1

Query: 2094 LKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2288
            +K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP + R
Sbjct:    1 MKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDPCRLR 65

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A067HGM6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015322mg PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.631e-60
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAADNWL+ LQV  PDFQFF+SH+SQWR
Sbjct:  217 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADNWLRGLQVYLPDFQFFVSHSSQWR 335

HSP 2 Score: 110.923 bits (276), Expect = 6.631e-60
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = -1

Query:  951 TDRRVKGGIDGARVHHNSQRTNGSPM-----------STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1220
             +RR KG     +   N    N   +           S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:  122 AERRAKGVACATQGQQNLMNVNLQILNRLTLRDKPTRSSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 222

HSP 3 Score: 90.5077 bits (223), Expect = 4.639e-16
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = -1

Query: 2094 EAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2297
            + ++K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP + R
Sbjct:   32 QTRMKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDPCRLR 99

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: V4TBK2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020424mg PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.099e-59
Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQNLDASFL+FHSLST ++SKNQ ++++SS RK   VD SS I LP+FGLASYKLRGSILTP G  E QQA+SLLQAAD+WL+ LQV  PDFQFF+SH+SQWR
Sbjct:  217 WVAVAW--YPIYRIPVGPTLQNLDASFLSFHSLST-AKSKNQPQFNSSSGRKVYSVDGSSKIPLPLFGLASYKLRGSILTPNGANEWQQANSLLQAADDWLRGLQVYLPDFQFFVSHSSQWR 335

HSP 2 Score: 110.538 bits (275), Expect = 2.099e-59
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = -1

Query:  951 TDRRVKGGIDGARVHHNSQRTNGSPM-----------STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1220
             +RR KG     +   N    N   +           S+SSDE EV  S GLLVFEY EQEQPHHR+PLYDK+SSLASQ PEIR Y+SC+LLPASW++VAW
Sbjct:  122 AERRAKGVACATQGQQNLMNVNLQILNRLTLRDKPTRSSSSDETEVCNSPGLLVFEYLEQEQPHHRQPLYDKVSSLASQNPEIRTYKSCDLLPASWVAVAW 222

HSP 3 Score: 90.1225 bits (222), Expect = 5.114e-16
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = -1

Query: 2094 EAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2297
            + ++K   T E D + ++ LGDLWE F+EWSVYGV VPLLL+G DSVKQYYVP LSG+QLY+DP + R
Sbjct:   32 QTRMKVWRTGEADAQPFFSLGDLWESFNEWSVYGVEVPLLLDGYDSVKQYYVPSLSGIQLYIDPCRLR 99

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Match: A0A059A7K8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03514 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 8.573e-59
Identity = 80/122 (65.57%), Postives = 93/122 (76.23%), Query Frame = -2

Query:  524 WLYYFWSRYPIYRIPMGPTLQNLDASFLTFHSLSTRSQSKNQLEYSASSSRKACGVDPSSNISLPVFGLASYKLRGSILTPGGIQEXXXXXXXXXXADNWLQCLQVRHPDFQFFLSHNSQWR 889
            W+   W  YPIYRIP+GPTLQN DASFL+FH LST S+SK + +   SS R+A GV   S  SLP FGLASYKL GSILTP G  ESQQA+ LLQAAD+WL+ LQV  PD+QFF+SHN+QWR
Sbjct:  305 WICVAW--YPIYRIPVGPTLQNFDASFLSFHPLSTHSRSKFEPQLHVSSGRRARGVSTPSKFSLPAFGLASYKLGGSILTPNGPHESQQANYLLQAADDWLRRLQVSLPDYQFFVSHNTQWR 424

HSP 2 Score: 118.627 bits (296), Expect = 8.573e-59
Identity = 70/125 (56.00%), Postives = 88/125 (70.40%), Query Frame = -1

Query:  951 RRTSDIGDAXXXXXXXXXXXXXXETDRRVKGGIDGARVHHNSQRTNGSPM-----------STSSDEVEVGKSNGLLVFEYFEQEQPHHRKPLYDKISSLASQFPEIRMYRSCELLPASWISVAW 1292
            RRT +  DAE+SRE SSAGSSD E +RR KG +D +   HN   +N   M           S+SSDE ++G S+G L+FEY EQEQPHHRKP YDK+S LASQFP+++ YRSC++LP+SWI VAW
Sbjct:  186 RRTGEDSDAETSRETSSAGSSDCEVERRGKGIVDASWNQHNLINSNSQKMNRLTLREKPLVSSSSDEADIGNSSGTLLFEYLEQEQPHHRKPFYDKVSILASQFPDLKRYRSCDILPSSWICVAW 310

HSP 3 Score: 138.658 bits (348), Expect = 2.642e-31
Identity = 77/123 (62.60%), Postives = 88/123 (71.54%), Query Frame = -1

Query: 2094 VDSV-AETRADS-DDSTLSRRNSVCYSSP-NIAKLTNLDRLMESVTPFVPAHCFSEAQLKGQETREVDLRLYYWLGDLWECFSEWSVYGVGVPLLLNGSDSVKQYYVPYLSGLQLYVDPHQPR 2453
            +DS  AE R DS D+S LSR NSVC SSP     LTNLDRLM+SVTP V AH   E + +   TRE D   YY+L DLWE F EWSV+GVGVPLLL G + VKQYYVP LSG+QLY+DP +PR
Sbjct:   65 IDSAEAEARPDSSDESALSRPNSVCSSSPPRTPNLTNLDRLMDSVTPSVRAHP-PELRSRRLRTREADPHPYYFLEDLWESFKEWSVFGVGVPLLLTGGEPVKQYYVPSLSGIQLYIDPLRPR 186

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of g.barbadense_cottongen_reftransV1_0091723 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PQW4_GOSAR	1.067e-60	65.57	Serine/threonine-protein phosphatase 4 regulatory ...	[more]
A0A067HGC8_CITSI	1.221e-60	71.31	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067H514_CITSI	1.685e-60	71.31	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4TVY9_9ROSI	2.680e-60	70.49	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4U693_9ROSI	4.264e-60	70.49	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
V4U0Y8_9ROSI	4.633e-60	70.49	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067H520_CITSI	6.162e-60	71.31	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067HGM6_CITSI	6.631e-60	71.31	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4TBK2_9ROSI	2.099e-59	70.49	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A059A7K8_EUCGR	8.573e-59	65.57	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008507	Protein of unknown function DUF789	PFAM	PF05623	DUF789	coord: 170..253 e-value: 4.4E-27 score: 95.4
None	No IPR available	PANTHER	PTHR31343	FAMILY NOT NAMED	coord: 83..256
None	No IPR available	PANTHER	PTHR31343:SF4	SUBFAMILY NOT NAMED	coord: 83..256
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 34..52
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 23..33
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 53..257
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..22
None	No IPR available	TMHMM	TMhelix		coord: 5..22
None	No IPR available	TMHMM	TMhelix		coord: 35..52

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0091723 ID=g.barbadense_cottongen_reftransV1_0091723; Name=g.barbadense_cottongen_reftransV1_0091723; organism=Gossypium barbadense; type=contig; length=2981bp
GCTCATTTTAATTAAGATTTGGTGCGGGTTCAGTCAGGCAGGCTATGTAT
CTCACATGACCAGGAATAACAATAACCAGTACTCCCTTCATTACAGAACT
AAAGAAAGCTTTATAAAAAGTAATTAAAAAAAAGGGTGGTAAGTTATACG
AGTATTTCCTTTTCTGGGAAGTACAGGTATGCGTATAAATCTGCAGATAC
AGTACAGGCATTTGAACTTTTGTCGATATTTGTAAATGTTCATTAGAGAA
TCATGTTGATGCAGAGAAACAAGGTTTCATGCTTATGATCCACAACCATA
CCATGACAAAACTTGAACCAGCCACACAGCAAAACAGTTGAGTGATGATC
AAGATTCCAATGAGCAAATCATAGTTTCTTGGATCCTGCCAGTAAATATT
GCAAAACAGCTGCCTTGTACCCATCGTTTCCAATGCCTGGGAATCTCGAT
GAATGCTATCTAGTAGCAGAAGCCAATCTCCTCCTCCATTATTGCATCAT
GCAACCACAAGCAGTCTTTGTTATCTCCACTGTGAGTTATGTGATAAAAA
AAACTGGAAATCGGGATGTCGGACTTGTAAGCATTGCAGCCAATTGTCAG
CAGCCTGTAACAGAGAGCTTGCTTGCTGCGATTCTTGGATACCACCGGGA
GTCAAAATTGAACCTCGCAATTTATAGGAAGCAAGGCCAAAAACAGGTAG
AGAGATATTTGAAGAGGGATCAACACCACAGGCTTTCCTACTGCTAGAAG
CAGAATACTCCAGCTGATTTTTACTTTGAGAACGTGTTGACAAAGAATGG
AACGTCAAGAAAGATGCATCCAGATTTTGGAGGGTTGGACCCATAGGTAT
TCTGTATATTGGGTACCTAGACCAAAAATAATATAACCAAACAAAGATAA
AGTTTAAAAAAACAGTGACTTGGCAATCTTTAGAAGTATAAGATGTTCTA
CCAAGCCACCGATATCCAACTTGCTGGCAATAGTTCACAGCTCCTGTACA
TCCTGATCTCTGGAAATTGAGATGCAAGACTTGAAATCTTGTCATATAAA
GGTTTCCGATGATGTGGTTGCTCTTGTTCAAAGTATTCAAAAACCAGCAG
CCCATTTGACTTGCCAACCTCCACTTCATCACTAGAGGTACTCATAGGAG
ATCCATTTGTCCTCTGGGAGTTGTGATGCACCCGAGCTCCATCAATACCA
CCTTTCACTCTCCTGTCTGTTTCAGAGTCGCTACTTCCAGCACTACTAAT
TTCTCTTGAAGACTCAGCATCACCGATGTCACTAGTCCTCCTGATAGTTC
AGCACATTGGCAAATTTTTGCAGATTAACAGTAAGGCAACTCAAAAGCTC
CATAGATTTTTACAAGCCTATCACCTAATATCAGGTATGCTGCTCAACTA
GTACCCAAAATAAGATTTAACAGACCAAGTATAACAGAATCAATGCCTGG
ATGTAGCAGGTAATTAGTCACTGATTTGCACAAAGTCAATGATCATTCTC
CTAAGCATACTGTCACAGTTACACTTCTGTCGAATAATAGTTATAGTCCA
AGAGAGAGAGCAAAGCAAGGCAGTGGTATTTGTGCAGATCAGATGCAGCG
TCATAAATTAATAATTTAACAATTAAGGAACCATTATTTTTCAGGTGCAT
TTCAGTATGTATAAAGTATAAAATCATGTATGGGAAGCATATTCCCTGGT
TGATGACAGTGCAACTAGAGAACACGTCAAATCAACATTATCTGTCAGCA
AATAATATTGTAGCAATGGATGCATTATGTAGGACAGCCAACCAACCATT
CCAAAACAAGTTAGGTGGTTTAAGTGAGAGCATTCAAGGTTTCTTGTCGC
CAGATAATAAGGAAAAAAAATCGATATAGATATCAACCATCAATTTAACT
TACTACATCATTGCAATATCAAGAGGAAGCATAAGAACCAGTAATGTATA
AGAATCTAGAATATTCATCGCTGCCACATAGTTAAGAGAGCAATCTGACA
TGATAAAAAACAATAAATACAACTACCATACTAACGGGAATTTATGAATA
GGGAAGAGGAAAATTTAGGAAGGATATAGCAGCAAGAAGCTCACCTCGGC
TGATGTGGATCTACATACAATTGTAAGCCTGACAAGTAAGGAACATAGTA
TTGCTTAACAGAATCACTCCCATTCAACAATAGCGGCACTCCGACTCCGT
ATACACTCCACTCGCTAAAACATTCCCAAAGATCACCGAGCCAATAATAT
AAGCGTAAATCCACTTCACGGGTTTCCTGTCCCTTCAGTTGTGCCTCAGA
GAAGCAATGAGCCGGGACAAAAGGGGTGACTGATTCCATGAGCCTATCCA
AATTGGTCAATTTAGCAATATTCGGCGAAGAGTAGCAGACCGAGTTACGC
CTCGACAATGTAGAGTCGTCAGAATCTGCCCGAGTCTCAGCCACTGAATC
GACTGAGTTGACTCCGCTCTCCTTATCTGACCGTTTCCGTAGCTCACTCA
GCAACGGTCTGTGTGTGAGTTGCTTCCTCTGCAACTGCTGATGTCGCCTC
ACCGCTGGCGGATTGTAGAATCGGTCCCTCGTCTGAGTTCGGGCTACCGC
GTACCCGCCTGAGTTTGACATGCTACTGCTATGGGGAGAAAAAATTAAAA
GTCTTAGCTCCTTTTGCCGGAGTAGCGTTGAAAGGGATTTTGGAGGGGCT
TTAAATTTGAAGAGGTAAAATAATGAGGACGAAATTGAAAAGGCAGCCCA
CGTACGACCCACGAGTGTTTTTCTCTTTGCGGCGTTGGTTTTTTTCTTTA
AAAGATTTGAAGAAGGAAATAAGAAATAAAAACATGTAAAAAAAAAAAAA
AAAGGTTTGAACAGAAAAAGGCTTTGTCGTCCTGAATTCTGATTTCGCTT
GCGTTTTCAACGAAGGTTATAGCGTAATTAAAAACGATCGAAATGACGAC
GTTGACCCTCTCTTTCCTAATTAATTATTAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR008507	DUF789

Search form

g.barbadense_cottongen_reftransV1_0091723, g.barbadense_cottongen_reftransV1_0091723 (contig) Gossypium barbadense

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