g.barbadense_cottongen_reftransV1_0091715, g.barbadense_cottongen_reftransV1_0091715 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 7.336e-20 Identity = 65/201 (32.34%), Postives = 100/201 (49.75%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQ----LVASSIDSI--------VNGS---------TSGNGKEPSVAAALAVQCGNFGSK----------------IESSI-----DPSHMTFGGM-KTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 S+ P+LC CGF+G+ T MCS C+K + +Q + A+S+ S+ +GS ++ + +PS + ++ + S +++S+ PS + K K+ NRC C K+VGLTGF CRCGN++C HRYSD H+C ++Y+A A + I K NPVV EK+ KI Sbjct: 8 SQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN6_PONAB (AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.793e-20 Identity = 67/201 (33.33%), Postives = 97/201 (48.26%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQ----LVASSIDSIVNG------------------STSGNGKEPSVAAALAVQCGNFGSKIES-SID-------------------PSHMTFGGM-KTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 S+ P+LC CGF+G+ T MCS C+K + +Q + A+S+ S+ STS + + V+ + S+++S S+D PS + K K+ NRC C K+VGLTGF CRCGN++C HRYSD H+C ++Y+A A + I K NPVV EK+ KI Sbjct: 8 SQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSTLDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.634e-19 Identity = 65/201 (32.34%), Postives = 96/201 (47.76%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQ-LVASSIDSIVNGSTS-----GNGKEPSVAAALAVQCGNF----------------GSKIES-SIDPS--------------------HMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 S+ P+LC CGF+G+ T MCS C+K + +Q + ++ S+ + S S +G P +AL + S+++S S+D + + K K+ NRC C K+VGLTGF CRCGN++C HRYSD H+C ++Y+A A + I K NPVV EK+ KI Sbjct: 8 SQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVTSLSESLPVQCTDGSVPEAQSALDSTASSVQPSPVSNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSETAQQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP3_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 1.698e-18 Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = 2 Query: 2273 RQASEG-PILCVNNCGFFGSAATMNMCSKCHK--------AMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKL 2746 +QAS G P+LC + CGF+G+ AT++MCS C++ M + AS+ TS + PS G+ S +P T ++ K NRC +C K+VGL GF CRCG +C HRY +KH C FD++ A+RDAIA+ANP+++ EKL Sbjct: 195 QQASAGQPVLCASGCGFYGNPATLDMCSVCYRQHCLLNGATMATGPSSSVAAASAATVATGAVTSDSCSVPSAEVN--------GAAFSSKNNPEPATV--VEKKAPANRCASCKKKVGLLGFACRCGATYCGTHRYPEKHACGFDFKGASRDAIARANPLIKGEKL 351
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.782e-18 Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 2 Query: 2291 PILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 P LC+ CGFF ++ T N+CSKC+ LK E A+ +A+ N +K + T G K C AC K+VGL GF+CRCG+LF A+HRY ++H CP DY++AA D +AK NPVV+ +KL ++ Sbjct: 5 PSLCIRGCGFFSTSQTKNLCSKCYNDF-LKDESARYLATF---------------------------NVNTKAAEEVTAQEATVLGSK-----GGC-ACKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: M1AEJ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008152 PE=4 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.210e-60 Identity = 118/172 (68.60%), Postives = 135/172 (78.49%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+ A+SI++IVNG++S NGKEP A+ VQ G+ K+ E+S D S +K KEGP RC C KRVGLTGFNC+CGNLFCAAHRYSDKH+CPFDY+ A RDAIAKANPVV AEKL+KI Sbjct: 1 MESSKETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDMILKQEQAKFAATSIENIVNGNSSSNGKEPIATGAINVQPGSADLKVISTEASSDLSSGPSSEVKPKEGPTRCTTCRKRVGLTGFNCKCGNLFCAAHRYSDKHECPFDYKNAGRDAIAKANPVVVAEKLNKI 172
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: C4NAL7_SOLPN (Stress-associated protein 5 OS=Solanum pennellii GN=SAP5 PE=4 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 3.931e-60 Identity = 116/172 (67.44%), Postives = 133/172 (77.33%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+ A+SI++IVNG++S NGKE A+ VQ G+ K+ E+ D S +K KEGP RC C KRVGLTGFNC+CGNLFCAAHRYSDKH+CPFDY+ A RDAIAKANPVV AEKL+KI Sbjct: 1 MESSKETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDMILKQEQAKFAATSIENIVNGNSSSNGKEAIEIGAINVQPGSADLKVIYTEAYYDLSSGPSSEVKPKEGPTRCTTCRKRVGLTGFNCKCGNLFCAAHRYSDKHECPFDYKNAGRDAIAKANPVVVAEKLNKI 172
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: B9GW97_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0003s20450g PE=4 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.667e-59 Identity = 119/176 (67.61%), Postives = 134/176 (76.14%), Query Frame = 2 Query: 2243 EKMDPLDETGRQAS-EGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGG----MKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 +KMD DETG QA E PILC+NNCGFFGSAATMNMCSKCHK M+LKQEQ +L ASSI SIVNGS S N EP +A + VQ K ++ PS + G K KEGP+RC +C KRVGLTGF CRCG+LFCA+HRYSDKHDCPFDYR AAR+AIAKANPVV+AEKLDKI Sbjct: 5 QKMD-RDETGCQAPPERPILCINNCGFFGSAATMNMCSKCHKDMLLKQEQTKLAASSIGSIVNGSASSNVNEPVIADTINVQINAVEPKT-ITVQPSCASVSGERVEAKPKEGPSRCTSCKKRVGLTGFKCRCGDLFCASHRYSDKHDCPFDYRTAAREAIAKANPVVKAEKLDKI 178
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A9P8S9_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0001s05600g PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 6.033e-59 Identity = 119/170 (70.00%), Postives = 132/170 (77.65%), Query Frame = 2 Query: 2261 DETGRQAS-EGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGG----MKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 DETG QA EGPILC NNCGFFGSAATMNMCSKCHK M+LKQEQA L ASSI SIVNGS+S N EP +A + VQ N ++ PS + G K KEGPNRC +C KRVGLTGF CRCG+LFCA+HRYSDKHDCPFDYR+AAR+AIAKANPVV+AEKLDKI Sbjct: 4 DETGCQAPPEGPILCTNNCGFFGSAATMNMCSKCHKGMLLKQEQANLAASSIGSIVNGSSSSNVFEPVIADIIDVQ-NNAVEPKTITVQPSCASGSGERVEAKPKEGPNRCTSCKKRVGLTGFKCRCGSLFCASHRYSDKHDCPFDYRSAAREAIAKANPVVKAEKLDKI 172
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A0A0E0E3V4_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.504e-58 Identity = 117/169 (69.23%), Postives = 127/169 (75.15%), Query Frame = 2 Query: 2264 ETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVA-----AALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 ETG Q EGPILC+NNCGFFGSAATMNMCSKCHK MI+KQEQA+L ASSIDSIVNG SG KEP +A A V+ ++ PS K KEGPNRC+ C KRVGLTGFNCRCGNL+CA HRYSDKHDC FDYR AARDAIAKANPVV+AEKLDKI Sbjct: 5 ETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSG--KEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGKEGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 171 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0091715 ID=g.barbadense_cottongen_reftransV1_0091715; Name=g.barbadense_cottongen_reftransV1_0091715; organism=Gossypium barbadense; type=contig; length=3330bpback to top |