g.barbadense_cottongen_reftransV1_0091715, g.barbadense_cottongen_reftransV1_0091715 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 7.336e-20 Identity = 65/201 (32.34%), Postives = 100/201 (49.75%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQ----LVASSIDSI--------VNGS---------TSGNGKEPSVAAALAVQCGNFGSK----------------IESSI-----DPSHMTFGGM-KTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 S+ P+LC CGF+G+ T MCS C+K + +Q + A+S+ S+ +GS ++ + +PS + ++ + S +++S+ PS + K K+ NRC C K+VGLTGF CRCGN++C HRYSD H+C ++Y+A A + I K NPVV EK+ KI Sbjct: 8 SQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN6_PONAB (AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 9.793e-20 Identity = 67/201 (33.33%), Postives = 97/201 (48.26%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQ----LVASSIDSIVNG------------------STSGNGKEPSVAAALAVQCGNFGSKIES-SID-------------------PSHMTFGGM-KTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 S+ P+LC CGF+G+ T MCS C+K + +Q + A+S+ S+ STS + + V+ + S+++S S+D PS + K K+ NRC C K+VGLTGF CRCGN++C HRYSD H+C ++Y+A A + I K NPVV EK+ KI Sbjct: 8 SQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSTLDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.634e-19 Identity = 65/201 (32.34%), Postives = 96/201 (47.76%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQ-LVASSIDSIVNGSTS-----GNGKEPSVAAALAVQCGNF----------------GSKIES-SIDPS--------------------HMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 S+ P+LC CGF+G+ T MCS C+K + +Q + ++ S+ + S S +G P +AL + S+++S S+D + + K K+ NRC C K+VGLTGF CRCGN++C HRYSD H+C ++Y+A A + I K NPVV EK+ KI Sbjct: 8 SQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVTSLSESLPVQCTDGSVPEAQSALDSTASSVQPSPVSNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSETAQQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP3_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 1.698e-18 Identity = 64/167 (38.32%), Postives = 91/167 (54.49%), Query Frame = 2 Query: 2273 RQASEG-PILCVNNCGFFGSAATMNMCSKCHK--------AMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKL 2746 +QAS G P+LC + CGF+G+ AT++MCS C++ M + AS+ TS + PS G+ S +P T ++ K NRC +C K+VGL GF CRCG +C HRY +KH C FD++ A+RDAIA+ANP+++ EKL Sbjct: 195 QQASAGQPVLCASGCGFYGNPATLDMCSVCYRQHCLLNGATMATGPSSSVAAASAATVATGAVTSDSCSVPSAEVN--------GAAFSSKNNPEPATV--VEKKAPANRCASCKKKVGLLGFACRCGATYCGTHRYPEKHACGFDFKGASRDAIARANPLIKGEKL 351
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.782e-18 Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 2 Query: 2291 PILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 P LC+ CGFF ++ T N+CSKC+ LK E A+ +A+ N +K + T G K C AC K+VGL GF+CRCG+LF A+HRY ++H CP DY++AA D +AK NPVV+ +KL ++ Sbjct: 5 PSLCIRGCGFFSTSQTKNLCSKCYNDF-LKDESARYLATF---------------------------NVNTKAAEEVTAQEATVLGSK-----GGC-ACKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A9PEQ1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05220g PE=2 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 4.824e-67 Identity = 127/171 (74.27%), Postives = 140/171 (81.87%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTF--GGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ DETG QA EGPILC+NNCGFFGSAATMNMCSKCHK +IL Q+QAQL ASSI+SIVNG++SGNGKEP VA A+ VQ KI S+ +PS + MK KEGP+RC AC KRVGLTGF CRCGNLFCA HRYSDKHDCPFDYR AARDAIAKANPVV+AEKLDKI Sbjct: 1 MESHDETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDIILNQQQAQLAASSIESIVNGNSSGNGKEPVVAGAVDVQAAPVEVKIIST-EPSIASSKPSEMKAKEGPSRCTACRKRVGLTGFGCRCGNLFCAIHRYSDKHDCPFDYRTAARDAIAKANPVVKAEKLDKI 170
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: B9N6U9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05520g PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 7.760e-67 Identity = 127/172 (73.84%), Postives = 141/172 (81.98%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGG---MKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ DETG QA EGPILC+NNCGFFGSAATMNMCSKCHK +ILKQ+QAQL ASSI+SIVNG++SGNGKEP VA A+ VQ KI S+ +PS T MK KEGP+RC +C KRVGLTGF+CRCGNLFCA HRYSDKH+C FDYR AARDAIAKANPVVRAEKLDKI Sbjct: 1 MESHDETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDIILKQQQAQLAASSIESIVNGNSSGNGKEPVVAVAVDVQSAPVEVKIIST-EPSSATSSKPSEMKAKEGPSRCTSCRKRVGLTGFSCRCGNLFCAVHRYSDKHNCRFDYRNAARDAIAKANPVVRAEKLDKI 171
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A0A067ETN4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030304mg PE=4 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 8.243e-67 Identity = 126/172 (73.26%), Postives = 139/172 (80.81%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDP---SHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ DETG QA EGPILCVNNCGFFGSAATMNMCSKCHKAMIL QEQAQL ASSI SIV+GS+ G GKEP VA ++ +Q G K + S++P S F G+K KEGP RC C+KRVGLTGFNCRCGNLFCA HRYSDKH CPFDYR AAR+AIAKANPVV+AEKLDKI Sbjct: 1 MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAASSIGSIVHGSSGGTGKEPIVAGSVDLQVGPVEIK-KFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 171
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A1ECK5_9ROSI (Putative multiple stress-responsive zinc-finger protein OS=Citrus hybrid cultivar PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.233e-66 Identity = 125/172 (72.67%), Postives = 139/172 (80.81%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDP---SHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ DETG QA EGPILCVNNCGFFGSAATMNMCSKCHKAMIL QEQAQL ASSI SIV+GS+ G GKEP +A ++ +Q G K + S++P S F G+K KEGP RC C+KRVGLTGFNCRCGNLFCA HRYSDKH CPFDYR AAR+AIAKANPVV+AEKLDKI Sbjct: 1 MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAASSIGSIVHGSSGGTGKEPIIAGSVDLQVGPVEIK-KFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 171
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: V4S339_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006050mg PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.233e-66 Identity = 125/172 (72.67%), Postives = 139/172 (80.81%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDP---SHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ DETG QA EGPILCVNNCGFFGSAATMNMCSKCHKAMIL QEQAQL ASSI SIV+GS+ G GKEP +A ++ +Q G K + S++P S F G+K KEGP RC C+KRVGLTGFNCRCGNLFCA HRYSDKH CPFDYR AAR+AIAKANPVV+AEKLDKI Sbjct: 1 MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAASSIGSIVHGSSGGTGKEPIIAGSVDLQVGPVEIK-KFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 171
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A0A068UR40_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_43 OS=Coffea canephora GN=GSCOC_T00030686001 PE=4 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 1.450e-64 Identity = 120/172 (69.77%), Postives = 135/172 (78.49%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNF---GSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+L ASSI++IVNGS++ NGKEP AL +Q ++SI+ +K KEGPNRC CHKRVGLTGFNCRCGNLFCA HRYSDKH+CPFDYR AARDAIA+ANPVV+AEKLDKI Sbjct: 45 MESSKETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKEMILKQEQAKLAASSIENIVNGSSTNNGKEPVATGALPIQAMPVDLEAVSTQASINVLAGQGSEVKVKEGPNRCTTCHKRVGLTGFNCRCGNLFCAVHRYSDKHECPFDYRNAARDAIARANPVVKAEKLDKI 216
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A0A068UPA9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_43 OS=Coffea canephora GN=GSCOC_T00030687001 PE=4 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 2.426e-63 Identity = 122/172 (70.93%), Postives = 138/172 (80.23%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGG---MKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ +ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+L ASSI++IVNGS+S KEP V ALAVQ + ++ S+ + G K KEGPNRC+ C KRVGLTGFNCRCGNLFCA HRYSDKH+CPFDYRAAA+DAIAKANPVV+AEKLDKI Sbjct: 92 MESSEETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKEMILKQEQAKLAASSIENIVNGSSSSKEKEPVVTGALAVQAVSADFEVVSTKASPEILVGQGSEAKVKEGPNRCSTCRKRVGLTGFNCRCGNLFCAVHRYSDKHECPFDYRAAAQDAIAKANPVVKAEKLDKI 263
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: F6GU85_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01820 PE=4 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 1.219e-62 Identity = 124/169 (73.37%), Postives = 136/169 (80.47%), Query Frame = 2 Query: 2261 DETGRQA-SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 DETG QA EGPILC+NNCGFFGS ATMNMCSKCHK M+LKQEQA+L ASSIDSIVNGS+S NGKEP++A+ + VQ KI +SS G K KEGPNRC+ C KRVGLTGFNCRCG+LFCA HRYSDKHDCPFDYR AARDAIAKANPVV+AEKLDKI Sbjct: 4 DETGCQAHPEGPILCINNCGFFGSPATMNMCSKCHKDMMLKQEQAKLAASSIDSIVNGSSSNNGKEPAIASTVDVQVDAKEPKIISVQSSFSFGSEGSGEAKPKEGPNRCSTCKKRVGLTGFNCRCGHLFCATHRYSDKHDCPFDYRTAARDAIAKANPVVKAEKLDKI 172
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: M5VS58_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012365mg PE=4 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 8.028e-61 Identity = 114/172 (66.28%), Postives = 130/172 (75.58%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ DETG Q + PILC+NNCGFFG AATMNMCSKC+K +LKQEQA ASSIDSIVNGS+S G P VA + VQ G +++ E SID S +K KEGP+RC C KRVGLTGFNC+CGN FCA+HRYSDKHDCPFDYR A +DAIAKANPVV+AEKLDKI Sbjct: 1 MESHDETGCQTPDRPILCINNCGFFGRAATMNMCSKCYKDTLLKQEQANFAASSIDSIVNGSSSSIGIGPVVAGVVDVQAGQVETRVVSTEPSIDSSSSMVFEVKEKEGPSRCTTCRKRVGLTGFNCKCGNTFCASHRYSDKHDCPFDYRTAGQDAIAKANPVVKAEKLDKI 172
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: C4NAK4_SOLLC (Stress-associated protein 5 OS=Solanum lycopersicum GN=SAP5 PE=4 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.210e-60 Identity = 118/172 (68.60%), Postives = 135/172 (78.49%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+ A+SI++IVNG++S NGKEP A+ VQ G+ K+ E+S D S +K KEGP RC C KRVGLTGFNC+CGNLFCAAHRYSDKH+CPFDY+ A RDAIAKANPVV AEKL+KI Sbjct: 1 MESSKETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDMILKQEQAKFAATSIENIVNGNSSSNGKEPIATGAINVQPGSADLKVISTEASSDLSSGPSSEVKPKEGPTRCTTCRKRVGLTGFNCKCGNLFCAAHRYSDKHECPFDYKNAGRDAIAKANPVVVAEKLNKI 172 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0091715 ID=g.barbadense_cottongen_reftransV1_0091715; Name=g.barbadense_cottongen_reftransV1_0091715; organism=Gossypium barbadense; type=contig; length=3330bpback to top |