g.barbadense_cottongen_reftransV1_0091715, g.barbadense_cottongen_reftransV1_0091715 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP7_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.178e-23 Identity = 58/162 (35.80%), Postives = 101/162 (62.35%), Query Frame = 2 Query: 2291 PILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGP-------NRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 P LC N CGFFGS + MN+CSKC++++ +++Q + +++ + + S + P L ++ + + + ++ +PS + + + P NRC +C+K+VG+ GF C+CG+ FC +HRY +KH+C FD++ RDAIAKANP+V+A+K+ +I Sbjct: 16 PKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLK-LPSCSIIAPGQKHPLEIKPAHLETVVVTA-EPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 1.465e-23 Identity = 67/163 (41.10%), Postives = 96/163 (58.90%), Query Frame = 2 Query: 2276 QASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVAS-SIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKT--KEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 Q E LCVNNCGF GS+ATMN+CS C+ + LKQ+Q +++S ++ S + + + N K+E + ++ + ++ PNRC C KRVGLTGF CRCG +FC HRY + H C +D+++A R+ IAKANP+V+A KL KI Sbjct: 8 QTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISLPTTEQNQQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQKI 170
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN5_HUMAN (AN1-type zinc finger protein 5 OS=Homo sapiens GN=ZFAND5 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.799e-23 Identity = 71/206 (34.47%), Postives = 96/206 (46.60%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVA------------------SSIDSIVN------GSTSGNGKEPSVAAALAVQ--------------------CGNFGSKIESSIDPSHMTFGGMKTKEGP----NRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 + GP+LC CGF+G+ T MCS C+K + +Q+ + ++ D+ +N GSTS + VAA Q ++ S+ + K E P NRC C K+VGLTGF+CRCGNLFC HRYSDKH+CP+DY+A A I K NPVV AEK+ +I Sbjct: 8 TPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.064e-23 Identity = 60/163 (36.81%), Postives = 91/163 (55.83%), Query Frame = 2 Query: 2285 EGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIES------SIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 + P LC NNCGFFGS AT N+CSKC + + Q Q Q +++ ++ + S + + +E+ + +P + P RC C +RVG+TGF CRCG +FC HRY+++H+C FD++ +D IAKANP+V+A+KL+KI Sbjct: 8 QEPRLCANNCGFFGSTATQNLCSKCFRDL---QHQEQNSSTAKHALTQSLAAVGAAASSSVSPPPPPPADSKEIVEAKSEKRAAAEPEEAD----GPPQDPKRCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLEKI 163
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN5_RAT (AN1-type zinc finger protein 5 OS=Rattus norvegicus GN=Zfand5 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.025e-22 Identity = 72/206 (34.95%), Postives = 94/206 (45.63%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVA------------------SSIDSIVN------GSTSGNGKEPSVAA-ALAVQCGNFGSKIESSIDPSHMTFGG-------------------MKTKEGP----NRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 + GP+LC CGF+G+ T MCS C+K + +Q+ + ++ D+ +N GSTS + VAA + Q E I K E P NRC C K+VGLTGF+CRCGNLFC HRYSDKH+CP+DY+A A I K NPVV AEK+ +I Sbjct: 8 TPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADATLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITSPKTEVSEPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP7_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Oryza sativa subsp. japonica GN=SAP7 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.982e-22 Identity = 65/165 (39.39%), Postives = 89/165 (53.94%), Query Frame = 2 Query: 2255 PLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQ-LVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKL 2746 P DET + G +CV CGFFGS AT NMCS+C++ + + A++ D + G K+ ++A + V + S T PNRC AC K+VGLTGF CRCG FC HR++D H C FDY++A ++ IAK NP+V A+KL Sbjct: 9 PDDETACGSGAGAAMCVTGCGFFGSEATNNMCSRCYREHSADNDAVEEAAAANSDLELVGVAETTTKKARMSAVVPVAVASSSSAAAEQPAAKAAT--------APNRCAACRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN5_MOUSE (AN1-type zinc finger protein 5 OS=Mus musculus GN=Zfand5 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.642e-22 Identity = 72/206 (34.95%), Postives = 94/206 (45.63%), Query Frame = 2 Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVA------------------SSIDSIVN------GSTSGNGKEPSVAA-ALAVQCGNFGSKIESSIDPSHMTFGG-------------------MKTKEGP----NRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 + GP+LC CGF+G+ T MCS C+K + +Q+ + ++ D+ +N GSTS + VAA + Q E I K E P NRC C K+VGLTGF+CRCGNLFC HRYSDKH+CP+DY+A A I K NPVV AEK+ +I Sbjct: 8 TPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADAGLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. japonica GN=SAP1 PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 6.744e-21 Identity = 61/150 (40.67%), Postives = 79/150 (52.67%), Query Frame = 2 Query: 2297 LCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKL 2746 LC N+CGF G+ AT N+C C A ++S + + + P AA L +E + NRC+ C KRVGLTGF CRCG+LFC HRYSD+H C +DY++AARDAIA+ NPVVRA K+ Sbjct: 21 LCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPV---------LDKQPPRPAAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. indica GN=SAP1 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.744e-21 Identity = 61/150 (40.67%), Postives = 79/150 (52.67%), Query Frame = 2 Query: 2297 LCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKL 2746 LC N+CGF G+ AT N+C C A ++S + + + P AA L +E + NRC+ C KRVGLTGF CRCG+LFC HRYSD+H C +DY++AARDAIA+ NPVVRA K+ Sbjct: 21 LCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPV---------LDKQPPRPAAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP5_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.128e-20 Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 2 Query: 2315 GFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 G + AT NMC KC A LV+++ + +GS +A +V + +K+ I P + + ++ NRC+ C K+VGLTGF CRCG LFC+ HRYSD+HDC +DY+ A R+AIA+ NPVV+A K+ K+ Sbjct: 31 GVTANPATNNMCQKCF--------NASLVSAAAGVVESGSILKR-------SARSVNLRSSPAKV--VIRPREIDAVKKRDQQIVNRCSGCRKKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKMVKV 160
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: M1AEJ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008152 PE=4 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.210e-60 Identity = 118/172 (68.60%), Postives = 135/172 (78.49%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+ A+SI++IVNG++S NGKEP A+ VQ G+ K+ E+S D S +K KEGP RC C KRVGLTGFNC+CGNLFCAAHRYSDKH+CPFDY+ A RDAIAKANPVV AEKL+KI Sbjct: 1 MESSKETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDMILKQEQAKFAATSIENIVNGNSSSNGKEPIATGAINVQPGSADLKVISTEASSDLSSGPSSEVKPKEGPTRCTTCRKRVGLTGFNCKCGNLFCAAHRYSDKHECPFDYKNAGRDAIAKANPVVVAEKLNKI 172
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: C4NAL7_SOLPN (Stress-associated protein 5 OS=Solanum pennellii GN=SAP5 PE=4 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 3.931e-60 Identity = 116/172 (67.44%), Postives = 133/172 (77.33%), Query Frame = 2 Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 M+ ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+ A+SI++IVNG++S NGKE A+ VQ G+ K+ E+ D S +K KEGP RC C KRVGLTGFNC+CGNLFCAAHRYSDKH+CPFDY+ A RDAIAKANPVV AEKL+KI Sbjct: 1 MESSKETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDMILKQEQAKFAATSIENIVNGNSSSNGKEAIEIGAINVQPGSADLKVIYTEAYYDLSSGPSSEVKPKEGPTRCTTCRKRVGLTGFNCKCGNLFCAAHRYSDKHECPFDYKNAGRDAIAKANPVVVAEKLNKI 172
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: B9GW97_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0003s20450g PE=4 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.667e-59 Identity = 119/176 (67.61%), Postives = 134/176 (76.14%), Query Frame = 2 Query: 2243 EKMDPLDETGRQAS-EGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGG----MKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 +KMD DETG QA E PILC+NNCGFFGSAATMNMCSKCHK M+LKQEQ +L ASSI SIVNGS S N EP +A + VQ K ++ PS + G K KEGP+RC +C KRVGLTGF CRCG+LFCA+HRYSDKHDCPFDYR AAR+AIAKANPVV+AEKLDKI Sbjct: 5 QKMD-RDETGCQAPPERPILCINNCGFFGSAATMNMCSKCHKDMLLKQEQTKLAASSIGSIVNGSASSNVNEPVIADTINVQINAVEPKT-ITVQPSCASVSGERVEAKPKEGPSRCTSCKKRVGLTGFKCRCGDLFCASHRYSDKHDCPFDYRTAAREAIAKANPVVKAEKLDKI 178
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A9P8S9_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0001s05600g PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 6.033e-59 Identity = 119/170 (70.00%), Postives = 132/170 (77.65%), Query Frame = 2 Query: 2261 DETGRQAS-EGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGG----MKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 DETG QA EGPILC NNCGFFGSAATMNMCSKCHK M+LKQEQA L ASSI SIVNGS+S N EP +A + VQ N ++ PS + G K KEGPNRC +C KRVGLTGF CRCG+LFCA+HRYSDKHDCPFDYR+AAR+AIAKANPVV+AEKLDKI Sbjct: 4 DETGCQAPPEGPILCTNNCGFFGSAATMNMCSKCHKGMLLKQEQANLAASSIGSIVNGSSSSNVFEPVIADIIDVQ-NNAVEPKTITVQPSCASGSGERVEAKPKEGPNRCTSCKKRVGLTGFKCRCGSLFCASHRYSDKHDCPFDYRSAAREAIAKANPVVKAEKLDKI 172
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A0A0E0E3V4_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.504e-58 Identity = 117/169 (69.23%), Postives = 127/169 (75.15%), Query Frame = 2 Query: 2264 ETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVA-----AALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755 ETG Q EGPILC+NNCGFFGSAATMNMCSKCHK MI+KQEQA+L ASSIDSIVNG SG KEP +A A V+ ++ PS K KEGPNRC+ C KRVGLTGFNCRCGNL+CA HRYSDKHDC FDYR AARDAIAKANPVV+AEKLDKI Sbjct: 5 ETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVNGGDSG--KEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGKEGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 171 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0091715 ID=g.barbadense_cottongen_reftransV1_0091715; Name=g.barbadense_cottongen_reftransV1_0091715; organism=Gossypium barbadense; type=contig; length=3330bpback to top |