g.barbadense_cottongen_reftransV1_0091715, g.barbadense_cottongen_reftransV1_0091715 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0091715
Unique Name	g.barbadense_cottongen_reftransV1_0091715
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3330

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP7_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.178e-23
Identity = 58/162 (35.80%), Postives = 101/162 (62.35%), Query Frame = 2

Query: 2291 PILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGP-------NRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            P LC N CGFFGS + MN+CSKC++++  +++Q  +  +++ + +    S +   P     L ++  +  + + ++ +PS +     + +  P       NRC +C+K+VG+ GF C+CG+ FC +HRY +KH+C FD++   RDAIAKANP+V+A+K+ +I
Sbjct:   16 PKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLK-LPSCSIIAPGQKHPLEIKPAHLETVVVTA-EPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.465e-23
Identity = 67/163 (41.10%), Postives = 96/163 (58.90%), Query Frame = 2

Query: 2276 QASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVAS-SIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKT--KEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            Q  E   LCVNNCGF GS+ATMN+CS C+  + LKQ+Q       +++S ++ S   +      +  +     N   K+E     + ++    +   ++ PNRC  C KRVGLTGF CRCG +FC  HRY + H C +D+++A R+ IAKANP+V+A KL KI
Sbjct:    8 QTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISLPTTEQNQQQRPNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQKI 170

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN5_HUMAN (AN1-type zinc finger protein 5 OS=Homo sapiens GN=ZFAND5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.799e-23
Identity = 71/206 (34.47%), Postives = 96/206 (46.60%), Query Frame = 2

Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVA------------------SSIDSIVN------GSTSGNGKEPSVAAALAVQ--------------------CGNFGSKIESSIDPSHMTFGGMKTKEGP----NRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            + GP+LC   CGF+G+  T  MCS C+K  + +Q+ +  ++                     D+ +N      GSTS   +   VAA    Q                         ++   S+     +    K  E P    NRC  C K+VGLTGF+CRCGNLFC  HRYSDKH+CP+DY+A A   I K NPVV AEK+ +I
Sbjct:    8 TPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.064e-23
Identity = 60/163 (36.81%), Postives = 91/163 (55.83%), Query Frame = 2

Query: 2285 EGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIES------SIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            + P LC NNCGFFGS AT N+CSKC + +   Q Q Q  +++  ++     +      S  +       +    +E+      + +P           + P RC  C +RVG+TGF CRCG +FC  HRY+++H+C FD++   +D IAKANP+V+A+KL+KI
Sbjct:    8 QEPRLCANNCGFFGSTATQNLCSKCFRDL---QHQEQNSSTAKHALTQSLAAVGAAASSSVSPPPPPPADSKEIVEAKSEKRAAAEPEEAD----GPPQDPKRCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLEKI 163

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN5_RAT (AN1-type zinc finger protein 5 OS=Rattus norvegicus GN=Zfand5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.025e-22
Identity = 72/206 (34.95%), Postives = 94/206 (45.63%), Query Frame = 2

Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVA------------------SSIDSIVN------GSTSGNGKEPSVAA-ALAVQCGNFGSKIESSIDPSHMTFGG-------------------MKTKEGP----NRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            + GP+LC   CGF+G+  T  MCS C+K  + +Q+ +  ++                     D+ +N      GSTS   +   VAA  +  Q        E  I                             K  E P    NRC  C K+VGLTGF+CRCGNLFC  HRYSDKH+CP+DY+A A   I K NPVV AEK+ +I
Sbjct:    8 TPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADATLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITSPKTEVSEPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP7_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Oryza sativa subsp. japonica GN=SAP7 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.982e-22
Identity = 65/165 (39.39%), Postives = 89/165 (53.94%), Query Frame = 2

Query: 2255 PLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQ-LVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKL 2746
            P DET   +  G  +CV  CGFFGS AT NMCS+C++      +  +   A++ D  + G      K+  ++A + V   +  S           T         PNRC AC K+VGLTGF CRCG  FC  HR++D H C FDY++A ++ IAK NP+V A+KL
Sbjct:    9 PDDETACGSGAGAAMCVTGCGFFGSEATNNMCSRCYREHSADNDAVEEAAAANSDLELVGVAETTTKKARMSAVVPVAVASSSSAAAEQPAAKAAT--------APNRCAACRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKL 165

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: ZFAN5_MOUSE (AN1-type zinc finger protein 5 OS=Mus musculus GN=Zfand5 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.642e-22
Identity = 72/206 (34.95%), Postives = 94/206 (45.63%), Query Frame = 2

Query: 2282 SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVA------------------SSIDSIVN------GSTSGNGKEPSVAA-ALAVQCGNFGSKIESSIDPSHMTFGG-------------------MKTKEGP----NRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            + GP+LC   CGF+G+  T  MCS C+K  + +Q+ +  ++                     D+ +N      GSTS   +   VAA  +  Q        E  I                             K  E P    NRC  C K+VGLTGF+CRCGNLFC  HRYSDKH+CP+DY+A A   I K NPVV AEK+ +I
Sbjct:    8 TPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADAGLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. japonica GN=SAP1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.744e-21
Identity = 61/150 (40.67%), Postives = 79/150 (52.67%), Query Frame = 2

Query: 2297 LCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKL 2746
            LC N+CGF G+ AT N+C  C  A          ++S +          + + P  AA L          +E            +      NRC+ C KRVGLTGF CRCG+LFC  HRYSD+H C +DY++AARDAIA+ NPVVRA K+
Sbjct:   21 LCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPV---------LDKQPPRPAAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. indica GN=SAP1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.744e-21
Identity = 61/150 (40.67%), Postives = 79/150 (52.67%), Query Frame = 2

Query: 2297 LCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKL 2746
            LC N+CGF G+ AT N+C  C  A          ++S +          + + P  AA L          +E            +      NRC+ C KRVGLTGF CRCG+LFC  HRYSD+H C +DY++AARDAIA+ NPVVRA K+
Sbjct:   21 LCANSCGFPGNPATQNLCQNCFLAATASTSSPSSLSSPV---------LDKQPPRPAAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Match: SAP5_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.128e-20
Identity = 58/147 (39.46%), Postives = 84/147 (57.14%), Query Frame = 2

Query: 2315 GFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            G   + AT NMC KC          A LV+++   + +GS           +A +V   +  +K+   I P  +     + ++  NRC+ C K+VGLTGF CRCG LFC+ HRYSD+HDC +DY+ A R+AIA+ NPVV+A K+ K+
Sbjct:   31 GVTANPATNNMCQKCF--------NASLVSAAAGVVESGSILKR-------SARSVNLRSSPAKV--VIRPREIDAVKKRDQQIVNRCSGCRKKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAIARENPVVKAAKMVKV 160

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A9PEQ1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05220g PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 4.824e-67
Identity = 127/171 (74.27%), Postives = 140/171 (81.87%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTF--GGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+  DETG QA EGPILC+NNCGFFGSAATMNMCSKCHK +IL Q+QAQL ASSI+SIVNG++SGNGKEP VA A+ VQ      KI S+ +PS  +     MK KEGP+RC AC KRVGLTGF CRCGNLFCA HRYSDKHDCPFDYR AARDAIAKANPVV+AEKLDKI
Sbjct:    1 MESHDETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDIILNQQQAQLAASSIESIVNGNSSGNGKEPVVAGAVDVQAAPVEVKIIST-EPSIASSKPSEMKAKEGPSRCTACRKRVGLTGFGCRCGNLFCAIHRYSDKHDCPFDYRTAARDAIAKANPVVKAEKLDKI 170

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: B9N6U9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05520g PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 7.760e-67
Identity = 127/172 (73.84%), Postives = 141/172 (81.98%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGG---MKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+  DETG QA EGPILC+NNCGFFGSAATMNMCSKCHK +ILKQ+QAQL ASSI+SIVNG++SGNGKEP VA A+ VQ      KI S+ +PS  T      MK KEGP+RC +C KRVGLTGF+CRCGNLFCA HRYSDKH+C FDYR AARDAIAKANPVVRAEKLDKI
Sbjct:    1 MESHDETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDIILKQQQAQLAASSIESIVNGNSSGNGKEPVVAVAVDVQSAPVEVKIIST-EPSSATSSKPSEMKAKEGPSRCTSCRKRVGLTGFSCRCGNLFCAVHRYSDKHNCRFDYRNAARDAIAKANPVVRAEKLDKI 171

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A0A067ETN4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030304mg PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 8.243e-67
Identity = 126/172 (73.26%), Postives = 139/172 (80.81%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDP---SHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+  DETG QA EGPILCVNNCGFFGSAATMNMCSKCHKAMIL QEQAQL ASSI SIV+GS+ G GKEP VA ++ +Q G    K + S++P   S   F G+K KEGP RC  C+KRVGLTGFNCRCGNLFCA HRYSDKH CPFDYR AAR+AIAKANPVV+AEKLDKI
Sbjct:    1 MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAASSIGSIVHGSSGGTGKEPIVAGSVDLQVGPVEIK-KFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 171

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A1ECK5_9ROSI (Putative multiple stress-responsive zinc-finger protein OS=Citrus hybrid cultivar PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.233e-66
Identity = 125/172 (72.67%), Postives = 139/172 (80.81%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDP---SHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+  DETG QA EGPILCVNNCGFFGSAATMNMCSKCHKAMIL QEQAQL ASSI SIV+GS+ G GKEP +A ++ +Q G    K + S++P   S   F G+K KEGP RC  C+KRVGLTGFNCRCGNLFCA HRYSDKH CPFDYR AAR+AIAKANPVV+AEKLDKI
Sbjct:    1 MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAASSIGSIVHGSSGGTGKEPIIAGSVDLQVGPVEIK-KFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 171

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: V4S339_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006050mg PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.233e-66
Identity = 125/172 (72.67%), Postives = 139/172 (80.81%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDP---SHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+  DETG QA EGPILCVNNCGFFGSAATMNMCSKCHKAMIL QEQAQL ASSI SIV+GS+ G GKEP +A ++ +Q G    K + S++P   S   F G+K KEGP RC  C+KRVGLTGFNCRCGNLFCA HRYSDKH CPFDYR AAR+AIAKANPVV+AEKLDKI
Sbjct:    1 MESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQLAASSIGSIVHGSSGGTGKEPIIAGSVDLQVGPVEIK-KFSMEPSSGSSFGFAGVKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 171

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A0A068UR40_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_43 OS=Coffea canephora GN=GSCOC_T00030686001 PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.450e-64
Identity = 120/172 (69.77%), Postives = 135/172 (78.49%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNF---GSKIESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+   ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+L ASSI++IVNGS++ NGKEP    AL +Q           ++SI+        +K KEGPNRC  CHKRVGLTGFNCRCGNLFCA HRYSDKH+CPFDYR AARDAIA+ANPVV+AEKLDKI
Sbjct:   45 MESSKETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKEMILKQEQAKLAASSIENIVNGSSTNNGKEPVATGALPIQAMPVDLEAVSTQASINVLAGQGSEVKVKEGPNRCTTCHKRVGLTGFNCRCGNLFCAVHRYSDKHECPFDYRNAARDAIARANPVVKAEKLDKI 216

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: A0A068UPA9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_43 OS=Coffea canephora GN=GSCOC_T00030687001 PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.426e-63
Identity = 122/172 (70.93%), Postives = 138/172 (80.23%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKIESSIDPSHMTFGG---MKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+  +ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+L ASSI++IVNGS+S   KEP V  ALAVQ  +   ++ S+     +  G     K KEGPNRC+ C KRVGLTGFNCRCGNLFCA HRYSDKH+CPFDYRAAA+DAIAKANPVV+AEKLDKI
Sbjct:   92 MESSEETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKEMILKQEQAKLAASSIENIVNGSSSSKEKEPVVTGALAVQAVSADFEVVSTKASPEILVGQGSEAKVKEGPNRCSTCRKRVGLTGFNCRCGNLFCAVHRYSDKHECPFDYRAAAQDAIAKANPVVKAEKLDKI 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: F6GU85_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01820 PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.219e-62
Identity = 124/169 (73.37%), Postives = 136/169 (80.47%), Query Frame = 2

Query: 2261 DETGRQA-SEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            DETG QA  EGPILC+NNCGFFGS ATMNMCSKCHK M+LKQEQA+L ASSIDSIVNGS+S NGKEP++A+ + VQ      KI   +SS        G  K KEGPNRC+ C KRVGLTGFNCRCG+LFCA HRYSDKHDCPFDYR AARDAIAKANPVV+AEKLDKI
Sbjct:    4 DETGCQAHPEGPILCINNCGFFGSPATMNMCSKCHKDMMLKQEQAKLAASSIDSIVNGSSSNNGKEPAIASTVDVQVDAKEPKIISVQSSFSFGSEGSGEAKPKEGPNRCSTCKKRVGLTGFNCRCGHLFCATHRYSDKHDCPFDYRTAARDAIAKANPVVKAEKLDKI 172

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: M5VS58_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012365mg PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.028e-61
Identity = 114/172 (66.28%), Postives = 130/172 (75.58%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+  DETG Q  + PILC+NNCGFFG AATMNMCSKC+K  +LKQEQA   ASSIDSIVNGS+S  G  P VA  + VQ G   +++   E SID S      +K KEGP+RC  C KRVGLTGFNC+CGN FCA+HRYSDKHDCPFDYR A +DAIAKANPVV+AEKLDKI
Sbjct:    1 MESHDETGCQTPDRPILCINNCGFFGRAATMNMCSKCYKDTLLKQEQANFAASSIDSIVNGSSSSIGIGPVVAGVVDVQAGQVETRVVSTEPSIDSSSSMVFEVKEKEGPSRCTTCRKRVGLTGFNCKCGNTFCASHRYSDKHDCPFDYRTAGQDAIAKANPVVKAEKLDKI 172

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Match: C4NAK4_SOLLC (Stress-associated protein 5 OS=Solanum lycopersicum GN=SAP5 PE=4 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.210e-60
Identity = 118/172 (68.60%), Postives = 135/172 (78.49%), Query Frame = 2

Query: 2249 MDPLDETGRQASEGPILCVNNCGFFGSAATMNMCSKCHKAMILKQEQAQLVASSIDSIVNGSTSGNGKEPSVAAALAVQCGNFGSKI---ESSIDPSHMTFGGMKTKEGPNRCNACHKRVGLTGFNCRCGNLFCAAHRYSDKHDCPFDYRXXXXXXXXXXNPVVRAEKLDKI 2755
            M+   ETG QA EGPILC+NNCGFFGSAATMNMCSKCHK MILKQEQA+  A+SI++IVNG++S NGKEP    A+ VQ G+   K+   E+S D S      +K KEGP RC  C KRVGLTGFNC+CGNLFCAAHRYSDKH+CPFDY+ A RDAIAKANPVV AEKL+KI
Sbjct:    1 MESSKETGCQAPEGPILCINNCGFFGSAATMNMCSKCHKDMILKQEQAKFAATSIENIVNGNSSSNGKEPIATGAINVQPGSADLKVISTEASSDLSSGPSSEVKPKEGPTRCTTCRKRVGLTGFNCKCGNLFCAAHRYSDKHECPFDYKNAGRDAIAKANPVVVAEKLNKI 172

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
SAP7_ARATH	1.178e-23	35.80	Zinc finger A20 and AN1 domain-containing stress-a...	[more]
SAP6_ARATH	1.465e-23	41.10	Zinc finger A20 and AN1 domain-containing stress-a...	[more]
ZFAN5_HUMAN	1.799e-23	34.47	AN1-type zinc finger protein 5 OS=Homo sapiens GN=...	[more]
SAP3_ARATH	2.064e-23	36.81	Zinc finger A20 and AN1 domain-containing stress-a...	[more]
ZFAN5_RAT	1.025e-22	34.95	AN1-type zinc finger protein 5 OS=Rattus norvegicu...	[more]
SAP7_ORYSJ	2.982e-22	39.39	Zinc finger A20 and AN1 domain-containing stress-a...	[more]
ZFAN5_MOUSE	3.642e-22	34.95	AN1-type zinc finger protein 5 OS=Mus musculus GN=...	[more]
SAP1_ORYSJ	6.744e-21	40.67	Zinc finger A20 and AN1 domain-containing stress-a...	[more]
SAP1_ORYSI	6.744e-21	40.67	Zinc finger A20 and AN1 domain-containing stress-a...	[more]
SAP5_ARATH	5.128e-20	39.46	Zinc finger A20 and AN1 domain-containing stress-a...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0091715 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A9PEQ1_POPTR	4.824e-67	74.27	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9N6U9_POPTR	7.760e-67	73.84	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A067ETN4_CITSI	8.243e-67	73.26	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A1ECK5_9ROSI	1.233e-66	72.67	Putative multiple stress-responsive zinc-finger pr...	[more]
V4S339_9ROSI	1.233e-66	72.67	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A068UR40_COFCA	1.450e-64	69.77	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
A0A068UPA9_COFCA	2.426e-63	70.93	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
F6GU85_VITVI	1.219e-62	73.37	Putative uncharacterized protein OS=Vitis vinifera...	[more]
M5VS58_PRUPE	8.028e-61	66.28	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
C4NAK4_SOLLC	1.210e-60	68.60	Stress-associated protein 5 OS=Solanum lycopersicu...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000058	Zinc finger, AN1-type	SMART	SM00154	AN1_Zf_4	coord: 144..181 e-value: 1.6E-16 score: 70.9
IPR000058	Zinc finger, AN1-type	PFAM	PF01428	zf-AN1	coord: 144..180 e-value: 2.5E-9 score: 37.0
IPR000058	Zinc finger, AN1-type	GENE3D	4.10.1110.10		coord: 134..199 e-value: 1.5E-29 score: 101.2
IPR000058	Zinc finger, AN1-type	PROSITE	PS51039	ZF_AN1	coord: 141..184 score: 12.46
IPR002653	Zinc finger, A20-type	SMART	SM00259	A20_3	coord: 49..73 e-value: 2.6E-9 score: 46.9
IPR002653	Zinc finger, A20-type	PFAM	PF01754	zf-A20	coord: 50..73 e-value: 6.4E-13 score: 48.2
IPR002653	Zinc finger, A20-type	PROSITE	PS51036	ZF_A20	coord: 46..80 score: 9.599
None	No IPR available	PANTHER	PTHR10634	AN1-TYPE ZINC FINGER PROTEIN	coord: 39..203
None	No IPR available	PANTHER	PTHR10634:SF32	SUBFAMILY NOT NAMED	coord: 39..203
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..203
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..28
None	No IPR available	SUPERFAMILY	118310	AN1-like Zinc finger	coord: 135..198
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 51..87
None	No IPR available	TMHMM	TMhelix		coord: 4..26

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0091715 ID=g.barbadense_cottongen_reftransV1_0091715; Name=g.barbadense_cottongen_reftransV1_0091715; organism=Gossypium barbadense; type=contig; length=3330bp
AAATAAATAAACAACAATCCAAATGTTTTTAAAGTCCATTTACAAATTAA
AACCCACAACAGCCCAAACCTAAACCCATTTCAGACCCAAAATCATAGAA
ACCCTAAAGCCCACTAGCTATCAAATTTTCAGCAAGCAAACCCTAGCCCC
ATCCTCTGCCGCCGCATACCTCACTGCTTGCTACCACCATGTGCGCCTCC
TCGTCGCACTCCTCGAACGCCCCATCCACGCGTCCCACTCCTCTCTAACA
CCTGCAACAAGGAGTAAATACGAAGACAAAGAGAGTAATACATGTACAGG
AGAAAAATCAAGCAAAAACGACAAAAATGTAAAAGTAGATAGTCATCTTA
ATCGGCTATAAGAGCCGATTATTCTATTTTTTTATGCACACTGAAAATAC
AAGAGCAGATTAAAAGTTTCAAAAGGTTGTTTTTTTAGTTTCGTTTCATC
TTCTTGTTTCTTCTTATTGATTTTTTTTTTACATCGATCTATTTTGAAAT
AAAAGGGGGGAGGACTTACTTGAATCAACCCTAGTCCTTCGGCTAATGGT
TTGAATGAGTTTGGCCCCCTCAAAATACAAGAAATAAGGGTCAAAGTCCC
TTTTTTGAGTGACCCCGACCACCGCCCATGGTGGAACTGCGGCGGTTCAG
CGATGAGGCGATGATAGGTATATTACCCTAGCCGAATAAAGAGAAAGGGA
GAAGGAGAGAGCAAAGAAGCTCTCTGTTTTCTTTTTTTTTTAAATGATGA
TATAAATTCTTACCTTTTTTCTTAATTTTTATTTTAAAAATAAATTTTGT
TTGGTTGAAATTAGATGTGAAGAAAGAGATTATGTTTTATTTTATTTTGT
ATTAAAATTGTAAATTTTTTTTATGTGTATGTATTTTGCATGAGACAGGA
ATCGCTGGGTTCGATTTTGTCAGACAAGATCGGCCAAATTAAGATTTCAG
GCAAGGAATTTTCTTGATTAAGGGTTTTCTTCCCCTTTTTTTTCCGTCCT
TTTAAAGTTTAATTCTTGAAAAAAAAGAGATAATTTAGGTTTTGTTTTCA
TCTGGTTGTACTTGATCTGGGTCAATTGGGTGTTTAGGGTTTTTGCTAAA
AGAAATTGAATTTTTAAGAGTAATTAGAAATTTGTTTGCTGTTGCTGGCT
GCTTACTAAGAATTTTTAGTGTAAATCGAGATCAATTTATGTATTTTTAA
TTATGAGCTAGAGGACACTGGATTATCTGCTTCCTTTTGAGACTAATTAT
ATTCATGATGATATGGGGGGAAGTTCCTTAGCTTAAGTCTGCGTAATTGA
ACTAATTTTCTCAATTGCTATCGAGCAGTTATTGCCTTTTAACAATGGCA
AAAATGTTTTTGTTCTATGATTGTGAGAGACTCAGAGCCAATCTACACCC
AATATACTAATTGTGCAGCATATGCACGGCTTAACATTAGATATAATGGA
TATGGTTGCAAACATGTCGGTTCTGGGAATGTATTTTGGAACTTATGGTC
AATTGAAAGCCTATATTCCTAACTTCAGCTTGTTATCATGCTAAACTGAT
TTAAACAAAGGATGCTTTATATTATATATATGTGTGTATGTATCTATCAT
TGGTATTGGCAACTCCATGATGTTCTCTCTCTAATATGTTTGCTTATTGG
ATGTGTTGCTCGGACTTTATTTATTTTTAATGAACTGGTGTTGGAAACAG
TTTTGGACATGGGTTTAGGGATGTGACCCTCCGAGGGCCCACCAAATATA
TGGAAAATCTTAGGAAAAATTGAACATTCCTATGTTATCCGGCACAAACC
CAAGTAACATAGCTTCTTGGTTTATTGATGTTCATACATCCTACTTTCTG
CCCATACCTGTTATTCAACATTTTCCCTTTGATTGGTATTATTATCAGCT
GATGCGGTGTTGTTCCTTTAATGGTTATGTTGTAAGTAAACTAATTATCT
TCAATTTCGCATCACCTGAGATCGCTACAATTAGTAATGATAGTTATGTC
TGGTCTCTGGTGCACTATTGATTGATGAATCATGATGGAGATAGTTAGTC
CTTGGTATGAGTTCTTATCAAGTAAAATGATCTTTTACATGCTTAATATG
TGCTTATGTCCGTTTATTGATATCCATCTTTTGGAGTTGAATCATTTTGT
GGTTCTTCCTCTCTTCCTTTTGCTCTTATTTTCTTGAGTTCCTCCTTTAT
TTTGGGTTATTGGTAGTAAGGTGGTTTTGTTGCAGGAGATTAGAGAAGAT
GGACCCTCTTGATGAGACAGGCCGCCAAGCTTCAGAAGGCCCCATCCTGT
GTGTTAATAACTGTGGTTTCTTTGGAAGTGCGGCTACCATGAATATGTGC
TCCAAATGTCACAAGGCAATGATCCTGAAGCAGGAACAGGCACAACTCGT
AGCATCATCCATCGATAGCATTGTTAATGGCAGCACTAGCGGGAATGGTA
AGGAACCATCTGTTGCTGCTGCTTTGGCTGTGCAATGTGGAAATTTTGGG
TCAAAAATTGAATCATCCATCGATCCATCCCATATGACCTTCGGTGGGAT
GAAAACAAAAGAGGGTCCCAACAGGTGTAATGCATGCCACAAGCGTGTTG
GTTTGACAGGATTTAACTGCAGGTGTGGAAACCTCTTCTGTGCAGCTCAT
CGTTACTCCGACAAACATGACTGCCCTTTCGATTACCGAGCTGCTGCTCG
CGATGCTATTGCTAAAGCCAACCCAGTTGTTCGGGCAGAGAAGCTCGATA
AAATCTGAGAACAACCCGGATCAAGATGAAGATATGTGGATGGTGTATGT
AAGTTGGTTACTTGTCTCATCAAGTGTCCCCTTGATTGATATTAAATGTT
GGGAGTCCATCATAGGGAATGTTGGGAGTCCATCATAGGGAGGGACATGA
TTTGCATTGTAAGTCTATATTTTCCCCTGTTTGTAAGTGTTTTTATTTGT
GCTTGTTTGATGGACATTGATATGATCAACTTGTAATGCTTCTTCTTTGT
GGTATGCATTTTTTTTCTACTTTTTAAGTTGCCTTTTAAGTTTGAAAACT
ATTGAAGTCCACTTTGGGAAAATAAATTTGGGCATGAAGAGAATTGCAAA
TGTTATTCGAATTCGGAGGTACGTGTCTAATATGGGTATGGTTAAATACG
AATAGATATATGGGTGGTCGGATTTTGTAAGTCATCTCTTTATATTCATG
TGTAGGATGAATGCTGACGACGAATACAGGAGGTTTTGAGTGTTTATGGA
TTTGGGCTGATCCAAATTTATGCACAAAGAGATTGATTCATTTTAATTTT
TAGGGGGTTTTATTTTGGTCATTTAAGATG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000058	Znf_AN1
IPR002653	Znf_A20

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003677	DNA binding

Search form

g.barbadense_cottongen_reftransV1_0091715, g.barbadense_cottongen_reftransV1_0091715 (contig) Gossypium barbadense

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