g.barbadense_cottongen_reftransV1_0094987, g.barbadense_cottongen_reftransV1_0094987 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094987
Unique Nameg.barbadense_cottongen_reftransV1_0094987
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2176
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy Swiss-Prot
Match: EMB74_ARATH (Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana GN=EMB1674 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.436e-12
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 3 
Query:  261 SPTPLANLS----LNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKVRFLIRLA 539
            +P PLA ++    L SV L DWWL   + K L + GF+  G  G R+  S  I+KRH++TTLE  DGIT++I+GFIN SR L+NG S +V    RL 
Sbjct:   50 TPFPLAVITPIKTLKSVTLSDWWLTK-KGKDLCIKGFESNGASGVRLFSSGTISKRHESTTLEAIDGITISINGFINRSRCLENGISIEVCNRFRLG 145
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: D7U8W8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0124g00540 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.969e-15
Identity = 59/116 (50.86%), Postives = 66/116 (56.90%), Query Frame = 3 
Query:  288 LNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLIRLAIDSYPCRQYHFIIFLIVGLYYMIFLKPCFC 629
            L SV LHDWWL       LAVGGF  R RQG RV  S AIAKRHDATTLETADGIT+ I GF+N SRT +NGF  +V   FL       Y   +Y    F+       +  KP  C
Sbjct:   20 LRSVTLHDWWLLKTNANRLAVGGFATRERQGIRVFSSGAIAKRHDATTLETADGITITIVGFLNKSRTHQNGFPSEVCKHFLFGFP---YHWEEYAVQCFVGESTKSGVSKKPSGC 132
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: V4MEC5_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10023956mg PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.825e-14
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 3 
Query:  228 KSDQLVRVPI--GSPTPLANLSLNSVVLHDWWLCM-VQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLI 530
            +++++ R P   G+ TP+A   L SV L DWWL      KGL V GF+ +G    R+  S AI++RHD+ TLET DG+TV ISGFIN SRTL+NGFS +V  RFL+
Sbjct:   45 RTNEISRTPFSFGAVTPIAG-KLKSVSLSDWWLTKKTNQKGLCVTGFELKGGSEARLFSSGAISRRHDSITLETFDGLTVCISGFINRSRTLQNGFSSEVCNRFLL 149
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A059ALG0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00627 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.453e-13
Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:  291 NSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLIRLAID-----SYPCRQYHFI 575
            N V L++WWL     KGLA+GGF  R  +   + CSA I KRHD TT ETADG+ + + G IN  RTL+NGFS KV  +FL+    D     +  C +Y  +
Sbjct:   37 NRVFLNEWWLVNANGKGLAIGGFAHRDSERVSLFCSAPIVKRHDITTFETADGMAIMVGGLINRLRTLENGFSTKVCNKFLLGFPYDWAEYSTSSCGEYSSV 138
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: M4F308_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra035458 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.069e-12
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 3 
Query:  285 SLNSVVLHDWWLCM-VQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPK--VRFLI 530
            +L SV L DWWL       GL V GF+ +G    R+  SA I+ RHD+TTLET+DG+TV+ISGFIN SR+ +NGFS +   RFL+
Sbjct:   65 TLKSVSLSDWWLTKKANETGLGVSGFESKGGPEVRLFSSATISTRHDSTTLETSDGLTVSISGFINRSRSFQNGFSSEDCNRFLL 149
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A087H2T5_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G124300 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.656e-12
Identity = 52/106 (49.06%), Postives = 65/106 (61.32%), Query Frame = 3 
Query:  231 SDQLVRVP--IGSPTPLANLSLNSVVLHDWWLCM-VQPKGLAVXX-XXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLI 530
            +D + R P  +G+ TP+   +L SV L DWWL    +  GL + G     G   +R+  S AI KRHD+T LET DGITV ISGFIN SRTL+NG S  V  RFL+
Sbjct:   47 TDGIPRTPFSLGAITPVIG-TLKSVSLSDWWLTKKTKENGLGIEGFESKSGSVARRLFSSGAITKRHDSTNLETFDGITVCISGFINQSRTLQNGISLDVCNRFLL 151
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A078GFB1_BRANA (BnaA01g21630D protein OS=Brassica napus GN=BnaA01g21630D PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.266e-11
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 3 
Query:  219 KPCKSDQLVRVPIG--SPTPLANLSLNSVVLHDWWLCM-VQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPK--VRFLI 530
            KP   +   R P    S TP    +L SV L DWWL       GL V GF+ +G    R+  SAAI+ RHD+TTLET+DG+TV+ISGFIN SR+ +NGFS +   RFL+
Sbjct:   41 KPNSDEIPPRTPFSFKSITPT---TLKSVSLSDWWLTKKANETGLGVSGFESKGGPEVRLFSSAAISTRHDSTTLETSDGLTVSISGFINRSRSFQNGFSSEDCNRFLL 146
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A059AL07_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00627 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.327e-11
Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 3 
Query:  291 NSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLIRLAID-----SYPCRQYHFI 575
            N V L++WWL     KGLA+GGF  R  +   + CSA I KRHD TT ETADG+ + + G IN  RTL+NGFS KV  +FL+    D     +  C +Y  +
Sbjct:   37 NRVFLNEWWLVNANGKGLAIGGFAHRDERVS-LFCSAPIVKRHDITTFETADGMAIMVGGLINRLRTLENGFSTKVCNKFLLGFPYDWAEYSTSSCGEYSSV 137
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: A0A0B2P9M3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026504 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.646e-10
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3 
Query:  294 SVVLHDWWLCMV----QPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLIRLAID 545
            +V L+DWWL       Q K LAV G   R  +  RV  SAA+ KR+D  +LETADGI V ISGFIN  RTL+NGF+ +V  RFL     D
Sbjct:   22 TVTLYDWWLIKAKNDFQGKRLAVAGVSSRKDEAMRVFVSAAVIKRYDVFSLETADGICVMISGFINEQRTLENGFAAEVFNRFLFGFPPD 111
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: K7LHE6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.691e-10
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3 
Query:  294 SVVLHDWWLCMV----QPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKV--RFLIRLAID 545
            +V L+DWWL       Q K LAV G   R  +  RV  SAA+ KR+D  +LETADGI V ISGFIN  RTL+NGF+ +V  RFL     D
Sbjct:   22 TVTLYDWWLIKAKNDFQGKRLAVAGVSSRKDEAMRVFVSAAVIKRYDVFSLETADGICVMISGFINEQRTLENGFAAEVFNRFLFGFPPD 111
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Match: D7KY97_ARALL (EMB1674 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475432 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.850e-10
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:  252 PIGSPTPLANLSLNSVVLHDWWLCMVQPKGLAVXXXXXXXXXXXXVLCSAAIAKRHDATTLETADGITVAISGFINTSRTLKNGFSPKVRFLIRLA 539
            P+   TP+   +L S+ L DWWL   + KGL++ GF+  G  G R+  S  I+KRH++TTLE  DGIT++I+GFIN SR+L+NG S +V    RL 
Sbjct:   51 PLSLITPIK--TLKSITLSDWWL-KKKSKGLSITGFESNGGSGVRLFSSGTISKRHESTTLEAIDGITISINGFINRSRSLENGVSNEVCNRFRLG 143
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
EMB74_ARATH6.436e-1247.42Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thali... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0094987 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7U8W8_VITVI2.969e-1550.86Putative uncharacterized protein OS=Vitis vinifera... [more]
V4MEC5_EUTSA1.825e-1450.94Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A059ALG0_EUCGR4.453e-1345.10Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
M4F308_BRARP2.069e-1252.94Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A087H2T5_ARAAL2.656e-1249.06Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
A0A078GFB1_BRANA1.266e-1148.62BnaA01g21630D protein OS=Brassica napus GN=BnaA01g... [more]
A0A059AL07_EUCGR1.327e-1145.10Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A0B2P9M3_GLYSO1.646e-1051.11Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
K7LHE6_SOYBN1.691e-1051.11Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
D7KY97_ARALL2.850e-1046.88EMB1674 OS=Arabidopsis lyrata subsp. lyrata GN=ARA... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 204..224
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..11
score: 0.471

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094987 ID=g.barbadense_cottongen_reftransV1_0094987; Name=g.barbadense_cottongen_reftransV1_0094987; organism=Gossypium barbadense; type=contig; length=2176bp
TTAGCCTGCCTTAATTTTGCAATGGCCTTTTCGGTGTTCAAATTCGACGA
TTTAAGAGGCTCCCGTGAATTAGATATATTTGTTTTTGAATCTTGAAAAA
CTTAGACATAAATAATATAAGGCCGGTCGCAGGCAGTGGCAGGTAAGCAA
ACGAGTTGCTGCCCGAAGCAAAACCGACCAAAATGGGGAAGAGAAACAGA
GAGAGAAGAAAATCTGAAAAGCCGTGTAAGTCGGACCAACTTGTCCGCGT
CCCCATCGGTTCCCCTACTCCTCTTGCTAATCTATCACTCAACTCTGTGG
TACTGCATGATTGGTGGTTGTGCATGGTGCAGCCTAAGGGTTTGGCTGTT
GGAGGGTTTCAATGCAGAGGGAGGCAAGGACAAAGAGTGTTGTGCTCTGC
AGCCATTGCCAAAAGACATGATGCCACCACTCTTGAAACTGCCGATGGCA
TCACAGTTGCTATTAGTGGATTTATCAATACCTCTCGTACACTTAAAAAT
GGCTTTTCACCTAAGGTGAGGTTTCTCATTAGACTAGCTATTGATTCTTA
TCCTTGCCGACAATATCATTTTATCATATTCCTAATAGTAGGACTATATT
ATATGATCTTCTTGAAACCCTGCTTTTGCTTAAATTTAAAATGTATCTTA
GGACAGCTAGACCAATTTGATAAATGAAATTTGGATATACATCCTGGCGG
ATCACAATGCACGTGTATTTTGTTAACTCCACTCCTCCCCTTGGAGCTCA
AATTTCTTGATCTTAATCCCTTGCAGGTTTGCAGTCATTTCCTCTTTGGA
TTTCCATATGACTGGGAGGAATATGCTTCACATTCTAATGAACAATCTTT
CTGTAGTAGCACTGAAGCAAGCAGTACTACTAGTTTGCTTCACAGCAACG
CTATGTCTTTGCCACTCCCTTCTTTAGACAATCTCCATGTCCCTGCTGCC
AGGATACGTGATCTTCTGATGCTTTCTGCTGGAGATTCTCCAAACTCAGT
TTTTGATCACATGCTGCTGCAAAAGTTGAGCACCCATGATTCTCAAAATG
CTGCAATTACTACGGCTGATTCAAACATGGGAAATAAAGATCCTAAAGAC
TGTCCTTATTCTGTTGCTGATGGTGAAAATTCGAATTGTCATAAGGAGAA
GGTTATTCAGAATCACGTAGATGATAATAACATCTTGTGTTCAAGGAGTA
AAACAACAGTGGGATCTTGGAATGAGGATGTGAGCATCCTTACCCCACCT
AATACTAGAGGTGTAATCACCAGAAGCATGACAAGGTTGAAGCGCCGTAC
TTCTGAAAGGCTGAAGAGACTGAGACTTTCTTCATCAGAGTTAAAGGAAA
AAGTATTGCGGAGATAAGACCAATAATCTCTCATCTCTTGCTAATACTTT
TTCCTTCCTTAGCTTTCGACATACATCAGAGCCTCAGGAAGATAGCAACT
ACAGGTGCTTTAAGAGGGAGTTGTGCATATATGCATGTGTGTGTGTATAT
ATACATATTTCTCCTTTGGCTATTACTAATGATAAAATAGAACCCTTGAA
CTAGTTTAGTTTTGTTAAATATGCCTGTATTTTTGTTGTACCCAAATAAG
CCCGTATTAGTGAAATGTTGATTTATGCATAAATTGTAAATTAGGGGCTT
ATTTGGATACAAGTTAAAGATTGCTTGCATGGTTCACACATAAAAGAAAA
CTTTCACTGGACATAAATCTCGATATATGGAAGTACTTACAAAGATCAAT
ATGTGGATATGAGAGCAATAGTTGTAACAGGAAGGCCAAATGCTGAAATA
CCTTGAGGTAAAGAATACGGCTGATTTACACCAATCCCAATGAGCAACAG
AGGAAGAGCTTCCCACTGCAAAGCAAACATGTTTACCTATAATGTAAGAG
AGAAGCCACTGAATACCGCACAAAACCAGATGATATGTTTCGAAACTAAG
CTGCATCGCAGAAAATCCTCGCCTCATTATCATCTTCAGCAAAGCAACAA
TGACCAAAACCTGCATGTCCTCCGACCAAATATAGAGAATTTTACGAGGA
ACACTTCTGATATATCAGTGGAATAGATGGTGCAGCATAATTAAGAAGCA
TGCGAATAAGTGGAAGATATAGGTGCCAATAAGAGCCAAGGTTTAATAGA
TTGTAACAAAACTTACCTTAAAGAGG
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