g.barbadense_cottongen_reftransV1_0094858, g.barbadense_cottongen_reftransV1_0094858 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 3.656e-11 Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 1 Query: 2146 EFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNSCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRI 2571 E L ++++L LSL + + P ++ L NL+ILD C +L++L I KKL LD++ C L+ P+ + L +L+VL GF + N C L ++ L +LRKL +++ +E D+L KL + I Sbjct: 577 EILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLSEVKNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSISI 718
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2) HSP 1 Score: 62.003 bits (149), Expect = 3.335e-8 Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 2161 FKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDR-IGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLK 2409 FKN++NL LS+ + + +LPT+L L NL+ LD+R C+ LE LP+ + L LT L + C +L +P+ L L+ L LK Sbjct: 877 FKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLK 960
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 7.149e-8 Identity = 65/236 (27.54%), Postives = 102/236 (43.22%), Query Frame = 1 Query: 2008 TLFNLSKQFPDLPTEWFSKMTGIKVLYLGRWEATAGQARHIEVEDIEFLK--GF------------KNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLK----------------------GFVILEAKNSCTLDDLSELPSLRKLSV-NVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKE 2604 T F + DL T FS A+ G R I V+D + GF K +LR+L+L S + +LP+++ L +LR LDL +C++ LP+R+ L+ L LD+ CY L+ +P+Q +KLS L+ L GF I+ +K L +L L +S+ ++ K + D + AK L+ L ++W G R E Sbjct: 470 TYFKIHDLIHDLATSLFSA------------SASCGNIREINVKDYKHTVSIGFAAVVSSYSPSLLKKFVSLRVLNL-SYSKLEQLPSSIGDLLHLRYLDL-SCNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCPLTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNLNLCGSISITHLERVKNDTDAEANLSAK-ANLQSLSMSWDNDGPNRYE 690
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: CSA1_ARATH (Disease resistance-like protein CSA1 OS=Arabidopsis thaliana GN=CSA1 PE=3 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 1.840e-7 Identity = 47/191 (24.61%), Postives = 90/191 (47.12%), Query Frame = 1 Query: 2104 ATAGQARHIEVEDIEFL--------KGFKNMKNLRLLSLQGI-------------------------SGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNSCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAW 2577 TA + H+++E+++FL K++ ++L+SL+ + + I +LP + +L+ L +L+++ C L++LPD +G LK L L LS C L+ P+ +S L++L + + D+ ++ S+R+L +N N I D L KF +L+ L + + Sbjct: 693 CTALKEMHVDMENMKFLVFLNLRGCTSLKSLPEIQLISLKTLILSGCSKFKTFQVISDKLEALYLDGTAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEIL-------LLDETAIKDMPKILSVRRLCLNKNE---KISRLPDLLNKFSQLQWLHLKY 873
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: RPP1_ARATH (Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 3.471e-7 Identity = 43/159 (27.04%), Postives = 75/159 (47.17%), Query Frame = 1 Query: 2143 IEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKL-----------SELQVLKGFVILEAKNSCTLDDLSELPSLRKLSVNVNTTKFN---IDEAGDALAKFQKLEKLRIAW 2577 +E L +N LR L LQ S + +LP ++ NL+ L++ C L KLP IG + L DLS C L +P + L S+L+ L + L++ ++ L D S+L S ++S +++ + I E ++ + L +I++ Sbjct: 774 LEKLPAIENATKLRELKLQNCSSLIELPLSIGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPININLKSLDTLNLTDCSQLKSFPEISTHISELRLKGTAIKEVPLSIMSWSPLADFQISY 932
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: R0G8V0_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025958mg PE=4 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 4.957e-70 Identity = 159/423 (37.59%), Postives = 234/423 (55.32%), Query Frame = 1 Query: 1444 LDDRQKLCLLCFSIFPENSEIKKRFLRFWWVGE-------------NLIAGNGKDEMGDLNDTLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFAKKARFFD-YDPDGKPIMDFSSCNKACMVKSERATASWFADYLKGNDKDGNSXXXXXXXXXXXXXXXXXXXXSADLVKLQMLFNFPHENTLIRASQQIDKLQTLFNLSKQFPDLPTEWFS--------------KMT--GIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNS---CTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKEDST 2613 LD+ +++ LL F++FPEN E+ + L +WW+GE +++A + E + L FVEK+LIEPV+ K +++P SYK+TP V + L+ + + + F+ Y KP M+ S NK C+V++ + A+ +K A+L+ +T+FN+S++FPD +WFS K+T +KV YLGRWE TA RHIEVE+ E +K K+M LRLLS QGIS I +L +CKL +L ILDLRAC++LEKLPD+I SLK LTYLD+++CY++D +P++L+ L L+VLKGFV+ +A + CTLD+L L +LRKLS+++N GD + F LEKL++AWG G KE+ T Sbjct: 222 LDNEKRIYLLSFAVFPENQEVNRTMLMYWWIGEGILNYKVTPPKKGSVLADEDRPE-NVVKKVLEEFVEKKLIEPVINKRKVEPSSYKMTPFVHASLVRISMEMKLFNMYHKGEKPTMNTSGLNKVCLVEASSSQPEAKANKMK----------------------------DAELI------------------------ETIFNVSERFPDFTFKWFSEDQSSAKKKFGPLSKVTYKTLKVFYLGRWERTAN--RHIEVENPELMKYLKHMTRLRLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALTYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDDETVCTLDELEHLKNLRKLSISINKDVTVAKLFGD-IQNFNSLEKLKVAWG-GINDHKEEET 587 HSP 2 Score: 90.5077 bits (223), Expect = 4.218e-15 Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 1 Query: 2914 QCFPRSEPPTWLVPRKMKKLTNLSIRGGR----LGYLNHEDGQK--WNADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQK 3189 QCFP PTW+ P K+ L L I+GG G E+GQ+ N LRLKFL K+ W+++Q+ FP L++L+ +CP+++FCP D G+W K Sbjct: 631 QCFPNPNLPTWIQPNKLGDLEKLYIKGGTKLTGFGTSPPEEGQEATCNVKILRLKFLPRLKVEWRDLQRYFPKLEFLDKYQCPQVSFCPTDGIGIWSK 728
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: M4E8H0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025076 PE=4 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 9.298e-68 Identity = 153/419 (36.52%), Postives = 225/419 (53.70%), Query Frame = 1 Query: 1450 DRQKLCLLCFSIFPENSEIKKRFLRFWWVGENLIAG-NGKDEMGDLND----------TLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFAKKARFFD-YDPDGKPIMDFSSCNKACMVKSERATASWFADYLKGNDKDGNSXXXXXXXXXXXXXXXXXXXXSADLVKLQMLFNFPHENTLIRASQQIDKLQTLFNLSKQFPDLPTEWFSK----------------MTGIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNS---CTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKEDST 2613 + +K+CLL F++FPEN E+ + L +WW+GE ++ N K + G D L FVEKRLIEPV K + +P SYK+TP V S ++ +K+ + FD Y KP M S NK C+V+ + A + D+ ++ +FN +S++FPD +WFS+ +KV YLGRWE TA RHIEVE+ E ++ K+M LRLLS QGIS I +L +CKL L ILDLRAC++LEKLP++I SLK LTYLD+++CY++D +P++L+ L+ L VLKGFV+ +A + CTL +L L LRKLS+ +N F++++ A+ +F+ LEK ++AWG +K ++T Sbjct: 225 NHKKICLLSFAVFPENQEVNRTMLMYWWIGEGILPEENVKPKKGTQPDDERPEDVVKAILDEFVEKRLIEPVENKRKEEPNSYKMTPFVHSSVVLISKEIKLFDIYRKGEKPTMHKSDLNKVCLVEGSSSQPEAKATKM------------------------------PDVNLIETVFN----------------------VSERFPDFAFKWFSEDQPSAKKKFGPMSKTVFKSLKVFYLGRWERTA--KRHIEVENPELMRHLKHMTKLRLLSFQGISRIERLDDAVCKLRELIILDLRACYNLEKLPEKIDSLKALTYLDITDCYMIDRMPKRLSWLNNLVVLKGFVVSDANDEEKVCTLAELVHLEKLRKLSITINKGDFSVNDLFLAVEEFKSLEKFKVAWGGINEHKKVETT 589 HSP 2 Score: 232.646 bits (592), Expect = 7.957e-61 Identity = 149/426 (34.98%), Postives = 217/426 (50.94%), Query Frame = 1 Query: 1993 IDKLQTLFNLSKQFPDLPTEWFSK----------------MTGIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNSCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKEDSTLDXXXXXXXXXXXXXXXXXXXXXXXXXXTDKVNKGEEKGNWERSAVAAAG-EANSKTAKLGGGLRGTANIALMAKKWRRLSMKGREPQ---NLEGLERLVKLDLQCFPRSEPPTWLVPRKMKKLTNLSIRGGR----LGYLNHEDGQKWNADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQKFVQ 3198 ++ ++T+FN+S++FPD +WFS+ +KV YLGRWE TA RHIEVE+ E ++ K+M LRLLS QGIS I +L +CKL L ILDLRAC++LEKLP++I SLK LTYLD+++CY++D +P++L+ L+ L VLKGFV+ +A + + L+EL L +KL KL I G + D EE + E+ VA G + K GG +R A + S +G+ P+ ++ + L KLDLQCFP + P WL P K+ L L I+GG G E+ ++ LRLKFL FK+ W+E+ + FP L++L+ + P+++FCPCD G+W+K Q Sbjct: 366 VNLIETVFNVSERFPDFAFKWFSEDQPSAKKKFGPMSKTVFKSLKVFYLGRWERTA--KRHIEVENPELMRHLKHMTKLRLLSFQGISRIERLDDAVCKLRELIILDLRACYNLEKLPEKIDSLKALTYLDITDCYMIDRMPKRLSWLNNLVVLKGFVVSDANDEEKVCTLAELVHL------------------------EKLRKLSITINKGDF---------------------------------SVNDLFLAVEEFKSLEKFKVAWGGINEHKKVETTGGVVRELIRTMTWAPPKGQASQEGKLPKVSKQIQLPKNLKKLDLQCFPDRDLPPWLKPHKLGGLEKLYIKGGTELTGFGKFETEETKECKVKVLRLKFLPRFKVEWRELGELFPKLEFLDKYQSPQVSFCPCDGIGIWRKKTQ 732
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: W9RPN5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024056 PE=4 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 4.132e-66 Identity = 169/454 (37.22%), Postives = 238/454 (52.42%), Query Frame = 1 Query: 1996 DKLQTLFNLSKQFPDLPTEWFS---------------KMTGIKVLYLGRWEATA---------------------------GQAR----HIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNS----CTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKEDSTLDXXXXXXXXXXXXXXXXXXXXXXXXXXTDKVNKGEEKGNWERSAVAAAGEANSKTAKLGGGLRGTANIALMAKKWRRLSMKGREPQNLEGLERLVKLDLQCFPRSEPPTWLVPRKMKKLTNLSIRGGRLGY--LNHEDGQKW-NADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQKFVQ 3198 DKL+T+FN+++ FPDL + + KM +KVLYLG W A+A G +R HIEV+ +FLKG K M +LRLLSLQGIS I +L ++ L +LRILDL+ACH+LE+LP I LK LT+LD+S+CYL+D++P+ L+ L +LQVLKGF++ + N C L+DL + +LRKLS+ ++ F ++ +AL + + LEKL ++WG RK S A+ S K EK N +R A++ +++ TAK ++ W +L KLDLQC+P+ P W+ P+K+ L L IRGGRLG+ L G +W + TLRLK+L KM+W+EMQ FP L YLE + CP I+ CPCD +GVW K Q Sbjct: 440 DKLETIFNVNESFPDLGLKSLAGIFQGENLNIEDRLLKMKALKVLYLGTWRASAKHHIEVDSSDFLKGLKLMSSLRLLSLQGISRITKHHIEVDSSDFLKGLKLMSSLRLLSLQGISRISELTDSIKGLRSLRILDLKACHNLEELPKEISFLKNLTHLDISDCYLIDHMPKGLSSLFKLQVLKGFIVDDYLNQTGKFCMLEDLVVMKNLRKLSIIISKKDFPAEKELNALERLEALEKLTVSWGAESTQRKNAS-------------------DHQPNEARISPQKSETTMEKPNPQRKVTASSTFSHTTTAK---------DLPQHVSPW-----------------KLKKLDLQCYPQQTSPKWMTPQKLASLEKLYIRGGRLGHELLGLSTGVEWESVQTLRLKYLAALKMDWEEMQALFPGLIYLEKVDCPLISMCPCDEDGVWVKHTQ 848 HSP 2 Score: 100.138 bits (248), Expect = 5.012e-18 Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 1441 GLDDRQKLCLLCFSIFPENSEIKKRFLRFWWVGENLIA---GNGKDEMGD-LNDTLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFAKKARFFDYDPDGKPIMDFSS 1767 GL+D+ K CLLCFS+F EN E+KKR L +WW GE + G+GK + D + L F K LIEPV KK + ++Y++ P+VRS +I FA + R F D G + SS Sbjct: 294 GLEDKAKKCLLCFSLFTENEELKKRMLTYWWEGEGFLRADDGDGKKAIEDAAGEILERFEAKGLIEPVFKKRQSTAKAYRMQPVVRSAIIKFADEERVFSCDASGNLAVKLSS 406
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: A0A078HM42_BRANA (BnaC07g18480D protein OS=Brassica napus GN=BnaC07g18480D PE=4 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 5.370e-65 Identity = 184/544 (33.82%), Postives = 277/544 (50.92%), Query Frame = 1 Query: 979 RTGNEQDGTNKQDGDANQAQETNDKKKEPLYELGKLCKELDYMIRSFQELENLKNSLREPFETLEANVNDIVSDLEKDELRKQVQHNLRVFRNNITRVKXXXXXXXXXXSINSDGNRALQTTFATG---EAGD---LPHLYGEHIFENSXXXXXXXXXXXGLDDRQKLCLLCFSIFPENSEIKKRFLRFWWVGENLIAGNGKDEMGDLNDTLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFAKKA--RFFDYDPDGKPIMDFSSCNKACMVKSERATASWFADYLKGNDKDGNSXXXXXXXXXXXXXXXXXXXXSADLVKLQMLFNFPHENTLIRASQQIDKLQTLFNLSKQFPDLPTEWFSKMTGIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKN--SCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWG 2580 R E +G+ +Q Q+ ++E E+ KL ++ M +F++L + ++++ + E +E N + + L K + K +L+ R + +K I L+ S QT+ G E G LP L+ F++S F+E E +E L+ LCLL F++FPEN E+KK L +WW+GE I+ +D + L K L+EP + +L+ YK+ P V + +++ A + FD + K M S + C+VK R++ A K KD NS +FN S+++PD +WF +M +KVLYLGRWE TA RHIEVE EFLK K++KNLRL S QGIS I L C L L ILDLRAC++LE LP+ IGSL+ L YLD+SECY+LD +P+++++L LQVLKGFVI ++ N C + L+ +LRKLS+ VN +F +++ ++L ++LE L+IAWG Sbjct: 85 RVKKESSAYASDNGEGSQGQD----QEEANLEILKLQNDIRQMKAAFEKLAHFQSNISKSLE-IEVPSNKLRAILLKTDSAKSRARDLKEIRRKVLNLKGQIPSLLKKQSSIGLSVTDSQTSEENGQIVETGSDILLPGLHVSDDFKHSSAFEEVVETFEVLEFTYMLCLLSFAVFPENKEVKKTMLMYWWIGEGFIS--YEDSENTVTRILDELSRKGLVEPAEDERKLKTGGYKMDPHVHAAVVYLASRNGLGLFDLYSERKLKMQCSESHNVCLVK--RSSLQPEAKASKMPLKDMNS---------------------------------------------------IFNSSERYPDFTFKWFPEMDSLKVLYLGRWERTA--KRHIEVESTEFLKDIKSLKNLRLASFQGISRIENLKKLPCSLPRLVILDLRACYNLEGLPEDIGSLESLIYLDVSECYMLDRMPREISRLKTLQVLKGFVISQSDNEKECAVKHLA---NLRKLSITVNRYQFKVEDFMESLKDLKQLESLKIAWG 563 HSP 2 Score: 105.531 bits (262), Expect = 1.285e-19 Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 2896 LVKLDLQCFPRSEPPTWLVPRKMKKLTNLSIRGGRLGYLNHEDGQ---KWNADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQ 3186 L KL+L+C+P PP WL P+ + KL LSI+GG L + + K + LRLK+L FK WK++Q FP LK LE +CP + FCP D NGVW+ Sbjct: 1026 LRKLELECYPEKNPPVWLNPKTLDKLEKLSIKGGSLSRFSDKPSNAENKCSVQILRLKYLHEFKAEWKDLQGLFPQLKLLEKFKCPEVAFCPTDGNGVWR 1125
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: M4E8G8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025074 PE=4 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 2.039e-64 Identity = 191/547 (34.92%), Postives = 283/547 (51.74%), Query Frame = 1 Query: 976 NRTGNEQDGTNKQD-GDANQAQETNDKKKEPLYELGKLCKELDYMIRSFQELENLKNSLREPFETLEANVNDIVSDLEKDELRKQVQHNLRVFRNNITRVKXXXXXXXXXXS---INSDGNRALQTTFATGEAGD---LPHLYGEHIFENSXXXXXXXXXXXGLDDRQKLCLLCFSIFPENSEIKKRFLRFWWVGENLIAGNGKDEMGDLNDTLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFA--KKARFFD-YDPDGKPIMDFSSCNKACMVKSERATASWFADYLKGNDKDGNSXXXXXXXXXXXXXXXXXXXXSADLVKLQMLFNFPHENTLIRASQQIDKLQTLFNLSKQFPDLPTEWFSKMTGIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKN--SCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWG 2580 N +E+D +QD DAN Q+ D E+ KL ++ M +F++L + ++++ + E +E N + + L K + K +L+ R + +K I L L+ S ++ ++ + E G LP L+ F++S F+E +K+E L+ LCLL F++FPEN E++K L +WW+GE I +D + L F K L+EPV + +L+P YK+ P V + +I+ A K FD Y K M S + C+VK R++ A K KD NS +FN S+++PD +WF +M +KVLYLGRWE TA RHIEVE EFLK K++K+LRL S QGIS I L C L L ILDLRAC++LE LP+ IGSL+ L YLD+SECY+LD +P+++++L LQVLKGFVI ++ N C + L +LRKLSV VN +F +++ ++L ++LE L+IAWG Sbjct: 107 NPRQDEKDANLRQDEKDANLRQDEKDAN----LEILKLQIDIRQMKAAFEKLAHFQSNISKSLE-IEVPSNKLRAILLKTDSAKSRARDLKEIRRKVLNLKSQIPLLLKKQSSIGLSVTDSQTFEENGQIIETGSDIFLPGLHVSDDFKDSSAFEEVVDKFEVLEFTYMLCLLSFAVFPENKEVEKTMLMYWWIGEGYI--RYEDSENTVTRILDEFSRKGLVEPVEDERKLKPGGYKMDPHVHAAVIYLASHKGLGLFDLYSKKKKLKMQSSESHNVCLVK--RSSLQPEAKASKMPLKDLNS-----------------------------VFNS----------------------SERYPDFTFKWFPEMDSLKVLYLGRWERTA--KRHIEVESTEFLKDIKSLKSLRLASFQGISRIENLKKLPCSLPKLVILDLRACYNLEGLPEDIGSLESLIYLDVSECYMLDRMPREISRLKTLQVLKGFVISQSDNEKECA---VKHLENLRKLSVTVNKYQFKVEDFMESLKDLKQLESLKIAWG 588 HSP 2 Score: 107.071 bits (266), Expect = 4.373e-20 Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 2896 LVKLDLQCFPRSEPPTWLVPRKMKKLTNLSIRGGRLG-YLNHEDG--QKWNADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQ 3186 L KL+L+C+P EPP WL P+ + KL LSI+GG L + +H K + LRLK+L FK WK++ FP LK LE +CP + FCP D NGVW+ Sbjct: 980 LKKLELECYPEKEPPVWLNPKTLDKLEKLSIKGGNLSSFSDHPSNAENKCSVQILRLKYLHEFKAEWKDLHTLFPQLKLLEKFKCPEVAFCPTDGNGVWR 1079 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 5
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094858 ID=g.barbadense_cottongen_reftransV1_0094858; Name=g.barbadense_cottongen_reftransV1_0094858; organism=Gossypium barbadense; type=contig; length=3382bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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