g.barbadense_cottongen_reftransV1_0094858, g.barbadense_cottongen_reftransV1_0094858 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094858
Unique Nameg.barbadense_cottongen_reftransV1_0094858
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length3382
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.656e-11
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 1
Query: 2146 EFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNSCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRI 2571
            E L    ++++L  LSL     + + P ++  L NL+ILD   C +L++L   I   KKL  LD++ C  L+  P+ +  L +L+VL GF    + N C L ++  L +LRKL +++       +E  D+L    KL  + I
Sbjct:  577 EILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLSEVKNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSISI 718          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 3.335e-8
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 2161 FKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDR-IGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLK 2409
            FKN++NL  LS+  +  + +LPT+L  L NL+ LD+R C+ LE LP+  +  L  LT L +  C +L  +P+ L  L+ L  LK
Sbjct:  877 FKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLK 960          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.149e-8
Identity = 65/236 (27.54%), Postives = 102/236 (43.22%), Query Frame = 1
Query: 2008 TLFNLSKQFPDLPTEWFSKMTGIKVLYLGRWEATAGQARHIEVEDIEFLK--GF------------KNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLK----------------------GFVILEAKNSCTLDDLSELPSLRKLSV-NVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKE 2604
            T F +     DL T  FS              A+ G  R I V+D +     GF            K   +LR+L+L   S + +LP+++  L +LR LDL +C++   LP+R+  L+ L  LD+  CY L+ +P+Q +KLS L+ L                       GF I+ +K    L +L  L     +S+ ++   K + D   +  AK   L+ L ++W   G  R E
Sbjct:  470 TYFKIHDLIHDLATSLFSA------------SASCGNIREINVKDYKHTVSIGFAAVVSSYSPSLLKKFVSLRVLNL-SYSKLEQLPSSIGDLLHLRYLDL-SCNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCPLTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNLNLCGSISITHLERVKNDTDAEANLSAK-ANLQSLSMSWDNDGPNRYE 690          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: CSA1_ARATH (Disease resistance-like protein CSA1 OS=Arabidopsis thaliana GN=CSA1 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.840e-7
Identity = 47/191 (24.61%), Postives = 90/191 (47.12%), Query Frame = 1
Query: 2104 ATAGQARHIEVEDIEFL--------KGFKNMKNLRLLSLQGI-------------------------SGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNSCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAW 2577
             TA +  H+++E+++FL           K++  ++L+SL+ +                         + I +LP  + +L+ L +L+++ C  L++LPD +G LK L  L LS C  L+  P+    +S L++L         +   + D+ ++ S+R+L +N N     I    D L KF +L+ L + +
Sbjct:  693 CTALKEMHVDMENMKFLVFLNLRGCTSLKSLPEIQLISLKTLILSGCSKFKTFQVISDKLEALYLDGTAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEIL-------LLDETAIKDMPKILSVRRLCLNKNE---KISRLPDLLNKFSQLQWLHLKY 873          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Match: RPP1_ARATH (Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.471e-7
Identity = 43/159 (27.04%), Postives = 75/159 (47.17%), Query Frame = 1
Query: 2143 IEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKL-----------SELQVLKGFVILEAKNSCTLDDLSELPSLRKLSVNVNTTKFN---IDEAGDALAKFQKLEKLRIAW 2577
            +E L   +N   LR L LQ  S + +LP ++    NL+ L++  C  L KLP  IG +  L   DLS C  L  +P  +  L           S+L+ L   + L++ ++  L D S+L S  ++S +++  +     I E   ++  +  L   +I++
Sbjct:  774 LEKLPAIENATKLRELKLQNCSSLIELPLSIGTATNLKQLNISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPININLKSLDTLNLTDCSQLKSFPEISTHISELRLKGTAIKEVPLSIMSWSPLADFQISY 932          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: R0G8V0_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10025958mg PE=4 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 4.957e-70
Identity = 159/423 (37.59%), Postives = 234/423 (55.32%), Query Frame = 1
Query: 1444 LDDRQKLCLLCFSIFPENSEIKKRFLRFWWVGE-------------NLIAGNGKDEMGDLNDTLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFAKKARFFD-YDPDGKPIMDFSSCNKACMVKSERATASWFADYLKGNDKDGNSXXXXXXXXXXXXXXXXXXXXSADLVKLQMLFNFPHENTLIRASQQIDKLQTLFNLSKQFPDLPTEWFS--------------KMT--GIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNS---CTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKEDST 2613
            LD+ +++ LL F++FPEN E+ +  L +WW+GE             +++A   + E   +   L  FVEK+LIEPV+ K +++P SYK+TP V + L+  + + + F+ Y    KP M+ S  NK C+V++  +     A+ +K                             A+L+                        +T+FN+S++FPD   +WFS              K+T   +KV YLGRWE TA   RHIEVE+ E +K  K+M  LRLLS QGIS I +L   +CKL +L ILDLRAC++LEKLPD+I SLK LTYLD+++CY++D +P++L+ L  L+VLKGFV+ +A +    CTLD+L  L +LRKLS+++N         GD +  F  LEKL++AWG G    KE+ T
Sbjct:  222 LDNEKRIYLLSFAVFPENQEVNRTMLMYWWIGEGILNYKVTPPKKGSVLADEDRPE-NVVKKVLEEFVEKKLIEPVINKRKVEPSSYKMTPFVHASLVRISMEMKLFNMYHKGEKPTMNTSGLNKVCLVEASSSQPEAKANKMK----------------------------DAELI------------------------ETIFNVSERFPDFTFKWFSEDQSSAKKKFGPLSKVTYKTLKVFYLGRWERTAN--RHIEVENPELMKYLKHMTRLRLLSFQGISRIERLDDAVCKLRDLIILDLRACYNLEKLPDKIDSLKALTYLDITDCYMIDRMPKRLSWLDNLEVLKGFVVSDATDDETVCTLDELEHLKNLRKLSISINKDVTVAKLFGD-IQNFNSLEKLKVAWG-GINDHKEEET 587          

HSP 2 Score: 90.5077 bits (223), Expect = 4.218e-15
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 1
Query: 2914 QCFPRSEPPTWLVPRKMKKLTNLSIRGGR----LGYLNHEDGQK--WNADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQK 3189
            QCFP    PTW+ P K+  L  L I+GG      G    E+GQ+   N   LRLKFL   K+ W+++Q+ FP L++L+  +CP+++FCP D  G+W K
Sbjct:  631 QCFPNPNLPTWIQPNKLGDLEKLYIKGGTKLTGFGTSPPEEGQEATCNVKILRLKFLPRLKVEWRDLQRYFPKLEFLDKYQCPQVSFCPTDGIGIWSK 728          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: M4E8H0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025076 PE=4 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 9.298e-68
Identity = 153/419 (36.52%), Postives = 225/419 (53.70%), Query Frame = 1
Query: 1450 DRQKLCLLCFSIFPENSEIKKRFLRFWWVGENLIAG-NGKDEMGDLND----------TLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFAKKARFFD-YDPDGKPIMDFSSCNKACMVKSERATASWFADYLKGNDKDGNSXXXXXXXXXXXXXXXXXXXXSADLVKLQMLFNFPHENTLIRASQQIDKLQTLFNLSKQFPDLPTEWFSK----------------MTGIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNS---CTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKEDST 2613
            + +K+CLL F++FPEN E+ +  L +WW+GE ++   N K + G   D           L  FVEKRLIEPV  K + +P SYK+TP V S ++  +K+ + FD Y    KP M  S  NK C+V+   +     A  +                               D+  ++ +FN                      +S++FPD   +WFS+                   +KV YLGRWE TA   RHIEVE+ E ++  K+M  LRLLS QGIS I +L   +CKL  L ILDLRAC++LEKLP++I SLK LTYLD+++CY++D +P++L+ L+ L VLKGFV+ +A +    CTL +L  L  LRKLS+ +N   F++++   A+ +F+ LEK ++AWG     +K ++T
Sbjct:  225 NHKKICLLSFAVFPENQEVNRTMLMYWWIGEGILPEENVKPKKGTQPDDERPEDVVKAILDEFVEKRLIEPVENKRKEEPNSYKMTPFVHSSVVLISKEIKLFDIYRKGEKPTMHKSDLNKVCLVEGSSSQPEAKATKM------------------------------PDVNLIETVFN----------------------VSERFPDFAFKWFSEDQPSAKKKFGPMSKTVFKSLKVFYLGRWERTA--KRHIEVENPELMRHLKHMTKLRLLSFQGISRIERLDDAVCKLRELIILDLRACYNLEKLPEKIDSLKALTYLDITDCYMIDRMPKRLSWLNNLVVLKGFVVSDANDEEKVCTLAELVHLEKLRKLSITINKGDFSVNDLFLAVEEFKSLEKFKVAWGGINEHKKVETT 589          

HSP 2 Score: 232.646 bits (592), Expect = 7.957e-61
Identity = 149/426 (34.98%), Postives = 217/426 (50.94%), Query Frame = 1
Query: 1993 IDKLQTLFNLSKQFPDLPTEWFSK----------------MTGIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNSCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKEDSTLDXXXXXXXXXXXXXXXXXXXXXXXXXXTDKVNKGEEKGNWERSAVAAAG-EANSKTAKLGGGLRGTANIALMAKKWRRLSMKGREPQ---NLEGLERLVKLDLQCFPRSEPPTWLVPRKMKKLTNLSIRGGR----LGYLNHEDGQKWNADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQKFVQ 3198
            ++ ++T+FN+S++FPD   +WFS+                   +KV YLGRWE TA   RHIEVE+ E ++  K+M  LRLLS QGIS I +L   +CKL  L ILDLRAC++LEKLP++I SLK LTYLD+++CY++D +P++L+ L+ L VLKGFV+ +A +   +  L+EL  L                        +KL KL I    G                                   +  D     EE  + E+  VA  G   + K    GG +R        A    + S +G+ P+    ++  + L KLDLQCFP  + P WL P K+  L  L I+GG      G    E+ ++     LRLKFL  FK+ W+E+ + FP L++L+  + P+++FCPCD  G+W+K  Q
Sbjct:  366 VNLIETVFNVSERFPDFAFKWFSEDQPSAKKKFGPMSKTVFKSLKVFYLGRWERTA--KRHIEVENPELMRHLKHMTKLRLLSFQGISRIERLDDAVCKLRELIILDLRACYNLEKLPEKIDSLKALTYLDITDCYMIDRMPKRLSWLNNLVVLKGFVVSDANDEEKVCTLAELVHL------------------------EKLRKLSITINKGDF---------------------------------SVNDLFLAVEEFKSLEKFKVAWGGINEHKKVETTGGVVRELIRTMTWAPPKGQASQEGKLPKVSKQIQLPKNLKKLDLQCFPDRDLPPWLKPHKLGGLEKLYIKGGTELTGFGKFETEETKECKVKVLRLKFLPRFKVEWRELGELFPKLEFLDKYQSPQVSFCPCDGIGIWRKKTQ 732          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: W9RPN5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024056 PE=4 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 4.132e-66
Identity = 169/454 (37.22%), Postives = 238/454 (52.42%), Query Frame = 1
Query: 1996 DKLQTLFNLSKQFPDLPTEWFS---------------KMTGIKVLYLGRWEATA---------------------------GQAR----HIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKNS----CTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWGWGGMPRKEDSTLDXXXXXXXXXXXXXXXXXXXXXXXXXXTDKVNKGEEKGNWERSAVAAAGEANSKTAKLGGGLRGTANIALMAKKWRRLSMKGREPQNLEGLERLVKLDLQCFPRSEPPTWLVPRKMKKLTNLSIRGGRLGY--LNHEDGQKW-NADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQKFVQ 3198
            DKL+T+FN+++ FPDL  +  +               KM  +KVLYLG W A+A                           G +R    HIEV+  +FLKG K M +LRLLSLQGIS I +L  ++  L +LRILDL+ACH+LE+LP  I  LK LT+LD+S+CYL+D++P+ L+ L +LQVLKGF++ +  N     C L+DL  + +LRKLS+ ++   F  ++  +AL + + LEKL ++WG     RK  S                         A+ S  K     EK N +R   A++  +++ TAK         ++      W                 +L KLDLQC+P+   P W+ P+K+  L  L IRGGRLG+  L    G +W +  TLRLK+L   KM+W+EMQ  FP L YLE + CP I+ CPCD +GVW K  Q
Sbjct:  440 DKLETIFNVNESFPDLGLKSLAGIFQGENLNIEDRLLKMKALKVLYLGTWRASAKHHIEVDSSDFLKGLKLMSSLRLLSLQGISRITKHHIEVDSSDFLKGLKLMSSLRLLSLQGISRISELTDSIKGLRSLRILDLKACHNLEELPKEISFLKNLTHLDISDCYLIDHMPKGLSSLFKLQVLKGFIVDDYLNQTGKFCMLEDLVVMKNLRKLSIIISKKDFPAEKELNALERLEALEKLTVSWGAESTQRKNAS-------------------DHQPNEARISPQKSETTMEKPNPQRKVTASSTFSHTTTAK---------DLPQHVSPW-----------------KLKKLDLQCYPQQTSPKWMTPQKLASLEKLYIRGGRLGHELLGLSTGVEWESVQTLRLKYLAALKMDWEEMQALFPGLIYLEKVDCPLISMCPCDEDGVWVKHTQ 848          

HSP 2 Score: 100.138 bits (248), Expect = 5.012e-18
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 1441 GLDDRQKLCLLCFSIFPENSEIKKRFLRFWWVGENLIA---GNGKDEMGD-LNDTLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFAKKARFFDYDPDGKPIMDFSS 1767
            GL+D+ K CLLCFS+F EN E+KKR L +WW GE  +    G+GK  + D   + L  F  K LIEPV KK +   ++Y++ P+VRS +I FA + R F  D  G   +  SS
Sbjct:  294 GLEDKAKKCLLCFSLFTENEELKKRMLTYWWEGEGFLRADDGDGKKAIEDAAGEILERFEAKGLIEPVFKKRQSTAKAYRMQPVVRSAIIKFADEERVFSCDASGNLAVKLSS 406          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: A0A078HM42_BRANA (BnaC07g18480D protein OS=Brassica napus GN=BnaC07g18480D PE=4 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 5.370e-65
Identity = 184/544 (33.82%), Postives = 277/544 (50.92%), Query Frame = 1
Query:  979 RTGNEQDGTNKQDGDANQAQETNDKKKEPLYELGKLCKELDYMIRSFQELENLKNSLREPFETLEANVNDIVSDLEKDELRKQVQHNLRVFRNNITRVKXXXXXXXXXXSINSDGNRALQTTFATG---EAGD---LPHLYGEHIFENSXXXXXXXXXXXGLDDRQKLCLLCFSIFPENSEIKKRFLRFWWVGENLIAGNGKDEMGDLNDTLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFAKKA--RFFDYDPDGKPIMDFSSCNKACMVKSERATASWFADYLKGNDKDGNSXXXXXXXXXXXXXXXXXXXXSADLVKLQMLFNFPHENTLIRASQQIDKLQTLFNLSKQFPDLPTEWFSKMTGIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKN--SCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWG 2580
            R   E       +G+ +Q Q+    ++E   E+ KL  ++  M  +F++L + ++++ +  E +E   N + + L K +  K    +L+  R  +  +K  I   L+  S         QT+   G   E G    LP L+    F++S  F+E  E +E L+    LCLL F++FPEN E+KK  L +WW+GE  I+   +D    +   L     K L+EP   + +L+   YK+ P V + +++ A +     FD   + K  M  S  +  C+VK  R++    A   K   KD NS                                                   +FN S+++PD   +WF +M  +KVLYLGRWE TA   RHIEVE  EFLK  K++KNLRL S QGIS I  L    C L  L ILDLRAC++LE LP+ IGSL+ L YLD+SECY+LD +P+++++L  LQVLKGFVI ++ N   C +  L+   +LRKLS+ VN  +F +++  ++L   ++LE L+IAWG
Sbjct:   85 RVKKESSAYASDNGEGSQGQD----QEEANLEILKLQNDIRQMKAAFEKLAHFQSNISKSLE-IEVPSNKLRAILLKTDSAKSRARDLKEIRRKVLNLKGQIPSLLKKQSSIGLSVTDSQTSEENGQIVETGSDILLPGLHVSDDFKHSSAFEEVVETFEVLEFTYMLCLLSFAVFPENKEVKKTMLMYWWIGEGFIS--YEDSENTVTRILDELSRKGLVEPAEDERKLKTGGYKMDPHVHAAVVYLASRNGLGLFDLYSERKLKMQCSESHNVCLVK--RSSLQPEAKASKMPLKDMNS---------------------------------------------------IFNSSERYPDFTFKWFPEMDSLKVLYLGRWERTA--KRHIEVESTEFLKDIKSLKNLRLASFQGISRIENLKKLPCSLPRLVILDLRACYNLEGLPEDIGSLESLIYLDVSECYMLDRMPREISRLKTLQVLKGFVISQSDNEKECAVKHLA---NLRKLSITVNRYQFKVEDFMESLKDLKQLESLKIAWG 563          

HSP 2 Score: 105.531 bits (262), Expect = 1.285e-19
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 2896 LVKLDLQCFPRSEPPTWLVPRKMKKLTNLSIRGGRLGYLNHEDGQ---KWNADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQ 3186
            L KL+L+C+P   PP WL P+ + KL  LSI+GG L   + +      K +   LRLK+L  FK  WK++Q  FP LK LE  +CP + FCP D NGVW+
Sbjct: 1026 LRKLELECYPEKNPPVWLNPKTLDKLEKLSIKGGSLSRFSDKPSNAENKCSVQILRLKYLHEFKAEWKDLQGLFPQLKLLEKFKCPEVAFCPTDGNGVWR 1125          
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Match: M4E8G8_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025074 PE=4 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 2.039e-64
Identity = 191/547 (34.92%), Postives = 283/547 (51.74%), Query Frame = 1
Query:  976 NRTGNEQDGTNKQD-GDANQAQETNDKKKEPLYELGKLCKELDYMIRSFQELENLKNSLREPFETLEANVNDIVSDLEKDELRKQVQHNLRVFRNNITRVKXXXXXXXXXXS---INSDGNRALQTTFATGEAGD---LPHLYGEHIFENSXXXXXXXXXXXGLDDRQKLCLLCFSIFPENSEIKKRFLRFWWVGENLIAGNGKDEMGDLNDTLTTFVEKRLIEPVLKKNRLQPRSYKVTPIVRSCLIHFA--KKARFFD-YDPDGKPIMDFSSCNKACMVKSERATASWFADYLKGNDKDGNSXXXXXXXXXXXXXXXXXXXXSADLVKLQMLFNFPHENTLIRASQQIDKLQTLFNLSKQFPDLPTEWFSKMTGIKVLYLGRWEATAGQARHIEVEDIEFLKGFKNMKNLRLLSLQGISGIPKLPTTLCKLENLRILDLRACHDLEKLPDRIGSLKKLTYLDLSECYLLDYIPQQLNKLSELQVLKGFVILEAKN--SCTLDDLSELPSLRKLSVNVNTTKFNIDEAGDALAKFQKLEKLRIAWG 2580
            N   +E+D   +QD  DAN  Q+  D       E+ KL  ++  M  +F++L + ++++ +  E +E   N + + L K +  K    +L+  R  +  +K  I L L+  S   ++   ++  +      E G    LP L+    F++S  F+E  +K+E L+    LCLL F++FPEN E++K  L +WW+GE  I    +D    +   L  F  K L+EPV  + +L+P  YK+ P V + +I+ A  K    FD Y    K  M  S  +  C+VK  R++    A   K   KD NS                             +FN                       S+++PD   +WF +M  +KVLYLGRWE TA   RHIEVE  EFLK  K++K+LRL S QGIS I  L    C L  L ILDLRAC++LE LP+ IGSL+ L YLD+SECY+LD +P+++++L  LQVLKGFVI ++ N   C    +  L +LRKLSV VN  +F +++  ++L   ++LE L+IAWG
Sbjct:  107 NPRQDEKDANLRQDEKDANLRQDEKDAN----LEILKLQIDIRQMKAAFEKLAHFQSNISKSLE-IEVPSNKLRAILLKTDSAKSRARDLKEIRRKVLNLKSQIPLLLKKQSSIGLSVTDSQTFEENGQIIETGSDIFLPGLHVSDDFKDSSAFEEVVDKFEVLEFTYMLCLLSFAVFPENKEVEKTMLMYWWIGEGYI--RYEDSENTVTRILDEFSRKGLVEPVEDERKLKPGGYKMDPHVHAAVIYLASHKGLGLFDLYSKKKKLKMQSSESHNVCLVK--RSSLQPEAKASKMPLKDLNS-----------------------------VFNS----------------------SERYPDFTFKWFPEMDSLKVLYLGRWERTA--KRHIEVESTEFLKDIKSLKSLRLASFQGISRIENLKKLPCSLPKLVILDLRACYNLEGLPEDIGSLESLIYLDVSECYMLDRMPREISRLKTLQVLKGFVISQSDNEKECA---VKHLENLRKLSVTVNKYQFKVEDFMESLKDLKQLESLKIAWG 588          

HSP 2 Score: 107.071 bits (266), Expect = 4.373e-20
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 2896 LVKLDLQCFPRSEPPTWLVPRKMKKLTNLSIRGGRLG-YLNHEDG--QKWNADTLRLKFLVNFKMNWKEMQQRFPNLKYLENLRCPRITFCPCDANGVWQ 3186
            L KL+L+C+P  EPP WL P+ + KL  LSI+GG L  + +H      K +   LRLK+L  FK  WK++   FP LK LE  +CP + FCP D NGVW+
Sbjct:  980 LKKLELECYPEKEPPVWLNPKTLDKLEKLSIKGGNLSSFSDHPSNAENKCSVQILRLKYLHEFKAEWKDLHTLFPQLKLLEKFKCPEVAFCPTDGNGVWR 1079          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
R13L4_ARATH3.656e-1131.69Disease resistance RPP13-like protein 4 OS=Arabido... [more]
RGA3_SOLBU3.335e-840.48Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA4_SOLBU7.149e-827.54Putative disease resistance protein RGA4 OS=Solanu... [more]
CSA1_ARATH1.840e-724.61Disease resistance-like protein CSA1 OS=Arabidopsi... [more]
RPP1_ARATH3.471e-727.04Probable disease resistance protein RPP1 OS=Arabid... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0094858 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
R0G8V0_9BRAS4.957e-7037.59Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
M4E8H0_BRARP9.298e-6836.52Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
W9RPN5_9ROSA4.132e-6637.22Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A078HM42_BRANA5.370e-6533.82BnaC07g18480D protein OS=Brassica napus GN=BnaC07g... [more]
M4E8G8_BRARP2.039e-6434.92Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 680..776
e-value: 1.1E-19
score: 69.7
coord: 397..581
e-value: 1.1E-19
score: 69.7
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 389..592
coord: 683..777
NoneNo IPR availablePANTHERPTHR23155:SF638SUBFAMILY NOT NAMEDcoord: 353..359
NoneNo IPR availablePANTHERPTHR23155LEUCINE-RICH REPEAT-CONTAINING PROTEINcoord: 685..732
NoneNo IPR availablePANTHERPTHR23155LEUCINE-RICH REPEAT-CONTAINING PROTEINcoord: 758..789
NoneNo IPR availablePANTHERPTHR23155LEUCINE-RICH REPEAT-CONTAINING PROTEINcoord: 209..326
NoneNo IPR availablePANTHERPTHR23155:SF638SUBFAMILY NOT NAMEDcoord: 685..732
coord: 209..326
NoneNo IPR availablePANTHERPTHR23155LEUCINE-RICH REPEAT-CONTAINING PROTEINcoord: 389..601
coord: 353..359
NoneNo IPR availablePANTHERPTHR23155:SF638SUBFAMILY NOT NAMEDcoord: 389..601
coord: 758..789

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094858 ID=g.barbadense_cottongen_reftransV1_0094858; Name=g.barbadense_cottongen_reftransV1_0094858; organism=Gossypium barbadense; type=contig; length=3382bp
GTCACTCGCATCTTTTTAGTCCTATTACTTGGCCTCTCCAACTCTTTTTC
TTTCCAGTGTTAAATCACTTTTTCTCTATCGTCGAAAGTCTGGTCGATTC
TGGCGTTTCACTGTTGTTCCTTTTAGACTAACGAGAATTAAAAAAAAATA
AAGCTGCAAAATTATTAGGGGAAAAATGGGCTTTTCTCTTCTGATCAGAT
CAAATCAGTCTCAACCGTCTGATTAATCAGTCAAAAAAAAAAAAACCTTG
TCTTCCTTTATAATCCGCTCTCGGCTTTTCCCTCATTTTCTTCACTGATT
GGTTTCATTGCGGATTTTTTCTTTTCATTTTTTAGCGGCGGACTTTGAAT
TTTTTCGGTAGGTAAGTTTTTTTTTTTTTTGTAGAAGGATGGACATGATT
TTTCTTTTAGCCTCGCTTTAAATTGATTCGCATTGTTAAAAGATCTATGA
TTCGATTGTAATGACGTAAATTAAATTTGTATTTTTTCAAGTATAATTTC
GATTTTTTGGTGACATTTTAGTATATTTTTCGTTCCCTTTTTTTGATTTC
TAATTTCATGCTGTGAATGAATATGCAGGGTTTAAAAATGGTTTTGCTGA
GAGAACATAGTAAAGCCTTGGCGCTTTAGTCTAGCAACTGCCTCTTTTTT
TTTTTTGTTTCTTTTTTCTTTTTTCCTTCTTGGAATATTCAAGGGAACCT
TCCCAGCTTCTCCTGCAGACTAGTTACTAATTAGGTTGAGAGATTTTTTT
TTACCTGGTGTGTGTTTATATTCTTGTCCAGGCTCACTTTCTTGAGCTAA
TGCCCTAGCCATGTCTTCCACAGATGACAAGCCACCTCCCTTATCCATTC
AGGACATAAACAATATCATAACGAACCTGAAGAACCTCCTCACTAGCGAT
TGTGCAGAGGCCGAAATCACTGTCGCCACCAACACTGCGGCTAATAACCT
GACTGGAAATGAGCAAGATGGCTCTAACCGTACTGGAAATGAGCAAGATG
GGACCAACAAACAGGATGGAGATGCTAACCAGGCCCAGGAGACCAACGAC
AAGAAGAAGGAACCGCTGTACGAGCTGGGAAAACTATGCAAAGAACTCGA
TTATATGATCAGGTCATTCCAGGAACTGGAGAACTTAAAAAATAGTCTAA
GAGAACCATTCGAAACTCTTGAGGCCAATGTCAACGACATCGTGAGTGAT
CTCGAAAAAGACGAGTTACGAAAACAGGTTCAGCACAATCTACGTGTGTT
CAGAAACAACATCACCCGAGTCAAAATCCTGATCCTCTTGCAACTTCAGG
CCGCCAGTATAAATTCCGATGGTAATCGTGCTTTGCAGACAACCTTTGCC
ACCGGCGAGGCAGGGGACTTGCCTCACCTATATGGTGAACATATATTTGA
AAATAGCTATTATTTTAAAGAATTTGAGGAAAAATATGAAGGCCTTGATG
ACAGGCAGAAACTGTGCTTGCTGTGTTTCTCAATTTTCCCTGAAAATTCG
GAGATAAAGAAGAGGTTTTTGAGATTTTGGTGGGTCGGAGAAAACTTAAT
CGCCGGAAATGGAAAGGATGAGATGGGAGATTTAAACGACACTCTCACCA
CATTCGTGGAGAAGAGGCTAATCGAGCCTGTTCTGAAGAAAAACAGATTA
CAACCCAGAAGCTACAAGGTGACCCCAATTGTTCGTTCGTGCTTGATCCA
TTTTGCCAAGAAAGCGAGGTTCTTCGATTATGACCCGGATGGAAAGCCCA
TCATGGATTTTTCATCTTGCAACAAGGCATGTATGGTGAAGTCAGAAAGA
GCTACTGCTTCCTGGTTCGCTGATTATCTTAAAGGCAATGACAAGGATGG
CAATTCAGAAAAGCCTAAAGAGCAGCAGCAACATCAGGAGCAAGGAAAGC
TATTGCAAGGAAAGCTATCTGCAGATCTAGTAAAGCTGCAGATGTTGTTC
AATTTTCCACATGAGAACACATTGATAAGAGCTAGTCAGCAAATTGATAA
ATTGCAGACGTTGTTCAACTTGAGTAAGCAATTTCCAGATTTACCTACGG
AGTGGTTTTCTAAGATGACGGGCATTAAAGTTCTTTATTTGGGTAGATGG
GAAGCCACGGCTGGGCAAGCTCGCCATATTGAGGTGGAAGACATTGAGTT
CTTAAAAGGGTTCAAAAACATGAAGAATTTAAGGCTTCTTAGCCTTCAAG
GTATTTCCGGTATCCCAAAGCTTCCCACCACTCTGTGCAAGCTTGAAAAT
TTGAGGATATTAGATCTAAGAGCATGTCACGATCTGGAGAAGCTACCAGA
CAGGATAGGGTCACTTAAGAAGCTGACTTACTTGGATTTATCAGAATGCT
ATCTGCTTGATTACATTCCCCAACAGCTGAATAAACTATCGGAACTTCAA
GTCCTTAAAGGGTTTGTGATTCTGGAAGCCAAAAACTCATGCACACTAGA
CGATTTGTCGGAGTTACCGAGTCTGAGAAAACTAAGCGTCAATGTGAACA
CTACCAAGTTCAATATCGATGAGGCAGGGGACGCTCTCGCTAAATTTCAG
AAACTTGAGAAGTTGAGGATAGCGTGGGGATGGGGGGGAATGCCAAGAAA
AGAGGATTCTACGCTAGACAGTAGTAGCGAACAACAGCAATCCAAGACCA
AGAAGAAGCAGGCAAGTAGTATTAGTAGTGCAGCAGCAAAAGCCTCGACT
GATAAAGTGAACAAGGGAGAGGAGAAAGGCAACTGGGAAAGGAGTGCAGT
CGCAGCAGCTGGTGAAGCAAATTCAAAGACCGCGAAGCTGGGAGGTGGTT
TAAGAGGGACAGCCAACATAGCTTTGATGGCTAAGAAATGGAGGAGGTTG
TCAATGAAAGGGAGAGAACCACAAAATCTGGAAGGCCTTGAGAGACTGGT
GAAACTGGACCTCCAGTGTTTCCCTCGCTCGGAACCACCTACTTGGCTGG
TACCAAGAAAAATGAAGAAACTCACGAATTTGTCGATTAGAGGTGGAAGA
CTGGGTTACCTAAATCATGAGGATGGCCAGAAGTGGAATGCGGACACCTT
ACGTTTGAAGTTTTTGGTGAACTTCAAGATGAACTGGAAAGAAATGCAGC
AACGATTTCCCAATTTGAAATATTTGGAGAACCTTAGATGCCCAAGAATC
ACATTCTGCCCATGCGATGCCAATGGAGTATGGCAAAAGTTCGTCCAATC
CAAATAAACTTCAACCTTTGAGCATTTGAATTTACTTTGCATTCTTGTTT
CTTTGTTTCTAATTCACCGGACAAGTTTGTGTTGTATTTCAGTTTCACCT
TCTTTTTTTCCTAGTTTGTTGTATTTTCCTTTATGGAAGAAATGGTAATT
TTCTTTATCCAACAAAGTCTTGTTTTTTCTGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf