g.barbadense_cottongen_reftransV1_0094852, g.barbadense_cottongen_reftransV1_0094852 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094852
Unique Nameg.barbadense_cottongen_reftransV1_0094852
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1955
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At02chromosomeg.barbadense_cottongen_reftransV1_0094852:1..1906 .
At02:32361643..32384254 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_SCHPO (KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis3 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.695e-81
Identity = 96/152 (63.16%), Postives = 118/152 (77.63%), Query Frame = -2
Query: 1172 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLTR 1627
            WD D +ID WKIE F    + +  LE SSF+T+FP+YREKYL+E WP V  AL ++GI   L+LVEGSMTV TTRKT DPY I+ ARDLIKLL+RSVP PQA+KI+ D + CDIIKIGN++RNKERFVKRRQRL+G N  TLK   +++LT+
Sbjct:   26 WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKA--LELLTQ 174          

HSP 2 Score: 130.568 bits (327), Expect = 6.695e-81
Identity = 90/159 (56.60%), Postives = 118/159 (74.21%), Query Frame = -1
Query:  618 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXX-XXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQ 1091
            ++ALE+LT CYILVQG TVA MG +KGLK+VRRIVEDC+ N +HP+YHIK LM+K+EL KDP L NE+WDRFLP FKK+NV  +K     +       PP Q PSK+D E+ESGEYFL +++K  KK  EK+E+Q +K  E +++R  AF+PP+E  K+
Sbjct:  166 LKALELLTQCYILVQGTTVAVMGGYKGLKEVRRIVEDCMHN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRKPAKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKERMKAFIPPEESSKK 323          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_YEASZ (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Zymaflore VL3) GN=KRR1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.903e-78
Identity = 97/154 (62.99%), Postives = 117/154 (75.97%), Query Frame = -2
Query: 1172 WDEDPNIDRWKIEKFDPSWNPDG--LLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLTR 1627
            WD D +ID+WKIE+F    N  G    E SSF T+FP+YRE YL+  W  V  AL ++ IA  L+LVEGSMTV TTRKT DP +I+KARDLIKLL+RSVP PQA+KIL D+M CD+IKIGN V NKERFVKRRQRLVGPN +TLK   +++LT+
Sbjct:   11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKA--LELLTK 161          

HSP 2 Score: 126.331 bits (316), Expect = 3.903e-78
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  738 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXX---XXXXXXKIDQELESGEYFLS 1091
            ++ALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDC++N +HP+YHIK LM+K+EL K P L NE+W RFLP FKK+NV  KK K         +    P Q P K+D E+ESGEYFLS
Sbjct:  153 LKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLS 272          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_YEASV (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain VIN 13) GN=KRR1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.903e-78
Identity = 97/154 (62.99%), Postives = 117/154 (75.97%), Query Frame = -2
Query: 1172 WDEDPNIDRWKIEKFDPSWNPDG--LLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLTR 1627
            WD D +ID+WKIE+F    N  G    E SSF T+FP+YRE YL+  W  V  AL ++ IA  L+LVEGSMTV TTRKT DP +I+KARDLIKLL+RSVP PQA+KIL D+M CD+IKIGN V NKERFVKRRQRLVGPN +TLK   +++LT+
Sbjct:   11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKA--LELLTK 161          

HSP 2 Score: 126.331 bits (316), Expect = 3.903e-78
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  738 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXX---XXXXXXKIDQELESGEYFLS 1091
            ++ALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDC++N +HP+YHIK LM+K+EL K P L NE+W RFLP FKK+NV  KK K         +    P Q P K+D E+ESGEYFLS
Sbjct:  153 LKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLS 272          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_YEAST (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRR1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.903e-78
Identity = 97/154 (62.99%), Postives = 117/154 (75.97%), Query Frame = -2
Query: 1172 WDEDPNIDRWKIEKFDPSWNPDG--LLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLTR 1627
            WD D +ID+WKIE+F    N  G    E SSF T+FP+YRE YL+  W  V  AL ++ IA  L+LVEGSMTV TTRKT DP +I+KARDLIKLL+RSVP PQA+KIL D+M CD+IKIGN V NKERFVKRRQRLVGPN +TLK   +++LT+
Sbjct:   11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKA--LELLTK 161          

HSP 2 Score: 126.331 bits (316), Expect = 3.903e-78
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  738 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXX---XXXXXXKIDQELESGEYFLS 1091
            ++ALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDC++N +HP+YHIK LM+K+EL K P L NE+W RFLP FKK+NV  KK K         +    P Q P K+D E+ESGEYFLS
Sbjct:  153 LKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLS 272          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_YEAS8 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=KRR1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.903e-78
Identity = 97/154 (62.99%), Postives = 117/154 (75.97%), Query Frame = -2
Query: 1172 WDEDPNIDRWKIEKFDPSWNPDG--LLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLTR 1627
            WD D +ID+WKIE+F    N  G    E SSF T+FP+YRE YL+  W  V  AL ++ IA  L+LVEGSMTV TTRKT DP +I+KARDLIKLL+RSVP PQA+KIL D+M CD+IKIGN V NKERFVKRRQRLVGPN +TLK   +++LT+
Sbjct:   11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKA--LELLTK 161          

HSP 2 Score: 126.331 bits (316), Expect = 3.903e-78
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  738 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXX---XXXXXXKIDQELESGEYFLS 1091
            ++ALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDC++N +HP+YHIK LM+K+EL K P L NE+W RFLP FKK+NV  KK K         +    P Q P K+D E+ESGEYFLS
Sbjct:  153 LKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLS 272          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_YEAS6 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI1631) GN=KRR1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.903e-78
Identity = 97/154 (62.99%), Postives = 117/154 (75.97%), Query Frame = -2
Query: 1172 WDEDPNIDRWKIEKFDPSWNPDG--LLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLTR 1627
            WD D +ID+WKIE+F    N  G    E SSF T+FP+YRE YL+  W  V  AL ++ IA  L+LVEGSMTV TTRKT DP +I+KARDLIKLL+RSVP PQA+KIL D+M CD+IKIGN V NKERFVKRRQRLVGPN +TLK   +++LT+
Sbjct:   11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKA--LELLTK 161          

HSP 2 Score: 126.331 bits (316), Expect = 3.903e-78
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  738 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXX---XXXXXXKIDQELESGEYFLS 1091
            ++ALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDC++N +HP+YHIK LM+K+EL K P L NE+W RFLP FKK+NV  KK K         +    P Q P K+D E+ESGEYFLS
Sbjct:  153 LKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLS 272          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_YEAS1 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) GN=KRR1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.903e-78
Identity = 97/154 (62.99%), Postives = 117/154 (75.97%), Query Frame = -2
Query: 1172 WDEDPNIDRWKIEKFDPSWNPDG--LLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLTR 1627
            WD D +ID+WKIE+F    N  G    E SSF T+FP+YRE YL+  W  V  AL ++ IA  L+LVEGSMTV TTRKT DP +I+KARDLIKLL+RSVP PQA+KIL D+M CD+IKIGN V NKERFVKRRQRLVGPN +TLK   +++LT+
Sbjct:   11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKA--LELLTK 161          

HSP 2 Score: 126.331 bits (316), Expect = 3.903e-78
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  738 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXX---XXXXXXKIDQELESGEYFLS 1091
            ++ALE+LT CYILVQGNTV+AMG FKGLK+VRR+VEDC++N +HP+YHIK LM+K+EL K P L NE+W RFLP FKK+NV  KK K         +    P Q P K+D E+ESGEYFLS
Sbjct:  153 LKALELLTKCYILVQGNTVSAMGPFKGLKEVRRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNVEKKVYTPFPPAQLPRKVDLEIESGEYFLS 272          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_BOVIN (KRR1 small subunit processome component homolog OS=Bos taurus GN=KRR1 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 4.968e-76
Identity = 94/144 (65.28%), Postives = 114/144 (79.17%), Query Frame = -2
Query: 1175 DRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1606
            D WK   F    NP GLLE SSF+T+FP+YRE YL+E WP V+ AL E+ I A L+L+EGSMTV TT+KT DPY+II+ARDLIKLL+RSV   QAI+IL D++ CDIIKIG+LVRNKERFVKRRQRL+GP  STLK   +++LT
Sbjct:   38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKA--LELLT 179          

HSP 2 Score: 117.087 bits (292), Expect = 4.968e-76
Identity = 78/156 (50.00%), Postives = 113/156 (72.44%), Query Frame = -1
Query:  630 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXX--XXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKE 1091
            ++ALE+LT+CYI+VQGNTV+A+G F GLK+VR++V D ++N +HP+Y+IK LM+K+EL KD  L++++W+RFLP FK KNV  +K   K+         PPPQ  S+ID+EL SGEYFL   +K  +K E  + KQA+  ++ + +R  AF+PPKE
Sbjct:  172 LKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALSKRQEERNKAFIPPKE 326          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_MOUSE (KRR1 small subunit processome component homolog OS=Mus musculus GN=Krr1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.588e-76
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = -2
Query: 1175 DRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1606
            D WK   F    NP GLLE SSF+T+FP+YRE YL+E WP V+ AL E+ + A L+L+EGSMTV TT+KT DPY+II+ARDLIKLL+RSV   QA++IL D++ CDIIKIG+LVRNKERFVKRRQRL+GP  STLK   +++LT
Sbjct:   37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKA--LELLT 178          

HSP 2 Score: 117.087 bits (292), Expect = 6.588e-76
Identity = 77/156 (49.36%), Postives = 112/156 (71.79%), Query Frame = -1
Query:  630 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXX--XXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKE 1091
            ++ALE+LT+CY++VQGNTV+A+G F GLK+VR++V D ++N +HP+Y+IK LM+K+EL KD  L++++W+RFLP FK KNV  +K   K+         PPPQ  S+ID+EL SGEYFL   +K  +K E  + KQA+   + + +R  AF+PPKE
Sbjct:  171 LKALELLTNCYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPIYNIKTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQIDKELASGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKE 325          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Match: KRR1_HUMAN (KRR1 small subunit processome component homolog OS=Homo sapiens GN=KRR1 PE=1 SV=4)

HSP 1 Score: 189.504 bits (480), Expect = 2.960e-75
Identity = 92/144 (63.89%), Postives = 114/144 (79.17%), Query Frame = -2
Query: 1175 DRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1606
            D WK   F    NP GLLE SSF+T+FP+YRE YL+E WP V+ AL E+ + A L+L+EGSMTV TT+KT DPY+II+ARDLIKLL+RSV   QA++IL D++ CDIIKIG+LVRNKERFVKRRQRL+GP  STLK   +++LT
Sbjct:   38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKA--LELLT 179          

HSP 2 Score: 116.316 bits (290), Expect = 2.960e-75
Identity = 82/173 (47.40%), Postives = 120/173 (69.36%), Query Frame = -1
Query:  582 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXX--XXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKE-PVKQDSNKSENKEEDV 1091
            ++ALE+LT+CYI+VQGNTV+A+G F GLK+VR++V D ++N +HP+Y+IK LM+K+EL KD  L++++W+RFLP FK KNV  +K   K+         PPPQ  S+ID+EL SGEYFL   +K  +K E  + KQA+  ++ + +R  AF+PPKE P+ +    S   + DV
Sbjct:  172 LKALELLTNCYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKN-IHPIYNIKSLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEASTETKIDV 343          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: R0FF04_9BRAS (KRR1 small subunit processome component OS=Capsella rubella GN=CARUB_v10001149mg PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.196e-118
Identity = 120/151 (79.47%), Postives = 141/151 (93.38%), Query Frame = -2
Query: 1175 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1627
            WD+DPNIDRW +E+FDP+ NP G+L+ S FST+FP+YREKYLQE+WP+++SALKEYG+A ELNLV+GSMTVSTTRKTRDPY+I+KARDLIKLLSRSVPAPQAIKILDDE+QCDIIKI NLVRN+ERFVKRRQRLVGPNSSTLK   +++LT
Sbjct:   33 WDDDPNIDRWTVERFDPASNPTGMLDRSEFSTLFPQYREKYLQESWPRIESALKEYGVACELNLVKGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKIANLVRNRERFVKRRQRLVGPNSSTLKA--LEILT 181          

HSP 2 Score: 194.126 bits (492), Expect = 2.196e-118
Identity = 142/214 (66.36%), Postives = 180/214 (84.11%), Query Frame = -1
Query:  453 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQDSNKSENKEEDVXXXX-XXXXXXXKEFGKQKSLQNINAEEYISAPAAEQPSKRKRK 1091
            ++ALEILT+CYILVQG+TVAAMG FKGLKQ+R+IVEDCV+NKMHPVYHIK LM+KKEL+KDPAL  E+WDRFLPTFKKKNV+ KK KSKEKKPYTPFPPPQ PSKID +LESGEYF+S+KKK  KKW+EKQEKQ +K+ ENKRKR+A+F+PP+EPV   SN SE+ + D+  L      +  +   ++K+ + +NAE+YI+AP+A++PSK+ +K
Sbjct:  174 LKALEILTNCYILVQGSTVAAMGPFKGLKQIRKIVEDCVQNKMHPVYHIKELMIKKELQKDPALATESWDRFLPTFKKKNVKQKKPKSKEKKPYTPFPPPQPPSKIDLQLESGEYFMSDKKKSEKKWQEKQEKQTEKSTENKRKRDASFLPPEEPVNNKSNNSEDGKSDITELTYSLKSKTKELKKQKKTHERVNAEDYIAAPSADKPSKKSKK 387          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: M0SMA3_MUSAM (KRR1 small subunit processome component OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.704e-118
Identity = 129/151 (85.43%), Postives = 142/151 (94.04%), Query Frame = -2
Query: 1175 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1627
            WDEDPNIDRWKIEKFDPSWN  G+LEVSSFST+FP+YREKYLQE WP VKSALKE+G++ ELNLVEGSMTVSTTRKTRDP+VIIKARDLIKLLSRSVPAPQAIKIL+DEMQCDIIKIGNL+RNKERFVKRR+RL+GPN STLK   I++LT
Sbjct:   35 WDEDPNIDRWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEVWPMVKSALKEHGVSCELNLVEGSMTVSTTRKTRDPFVIIKARDLIKLLSRSVPAPQAIKILNDEMQCDIIKIGNLIRNKERFVKRRERLLGPNLSTLKA--IEILT 183          

HSP 2 Score: 183.341 bits (464), Expect = 2.704e-118
Identity = 148/219 (67.58%), Postives = 178/219 (81.28%), Query Frame = -1
Query:  441 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQ--DSNKSENKEEDVXXXXXXXXXXXKEFGKQKSLQNINAEEYISAPAAEQPSKRKRKSKHT 1091
            ++A+EILT CY+LVQGNTV+AMGSFKGLKQVRRIVEDC++N++HPVYHIK L+MK+EL K+PAL NENWDRFLP FKKKNV+ +KVK+KEKKPYTPFPPPQQPSKID +LESGEYFLS+KKK A+KW+EKQEKQ +K AENKRKREAAF+PPKEP     DSN S+    D+AA+ KS K KAK   K K+  N+ AE YI+   + +  K+ R S  T
Sbjct:  176 LKAIEILTGCYVLVQGNTVSAMGSFKGLKQVRRIVEDCIQNQLHPVYHIKTLLMKRELAKNPALANENWDRFLPKFKKKNVKQRKVKAKEKKPYTPFPPPQQPSKIDLQLESGEYFLSDKKKSARKWQEKQEKQTEKAAENKRKREAAFIPPKEPSSHLTDSNNSDKNTSDLAAMTKSLKDKAKGLKKLKAHDNVRAESYIADAESSRRKKKHRSSSET 394          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: A0A087G5Q9_ARAAL (KRR1 small subunit processome component OS=Arabis alpina GN=AALP_AA8G081600 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 5.908e-118
Identity = 129/151 (85.43%), Postives = 146/151 (96.69%), Query Frame = -2
Query: 1175 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1627
            WD+DPNIDRW IEKFDPSWNP+G+LEVSSFST+FP+YREKYLQ++WP+V+SALKEYGIA +LNLVEGSMTVSTTRKTRDPY+++KARDLIKLLSRSVPAPQAIKIL+DEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLK   +++LT
Sbjct:   29 WDDDPNIDRWTIEKFDPSWNPNGMLEVSSFSTLFPQYREKYLQDSWPRVESALKEYGIACKLNLVEGSMTVSTTRKTRDPYIVVKARDLIKLLSRSVPAPQAIKILEDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKA--LEILT 177          

HSP 2 Score: 176.407 bits (446), Expect = 5.908e-118
Identity = 137/209 (65.55%), Postives = 167/209 (79.90%), Query Frame = -1
Query:  477 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVK----QDSNKSENKEEDVXXXXXXXXXXXKEFGKQKSLQNINAEEYISAPAAE 1091
            ++ALEILT+CYILVQG+TVAAMG FKGLKQ+RRIVEDCVENK+HPVYHIKILMMKKELEKDPAL  E+WDRFLP FKKKNV+ KK KSKEKKPYTPFPPPQ PSK+D +LESGEYFLS+KKK  K W+EKQEKQ +K+ ENKRKR+A+FVPP+EP+K      +    +KE           +  +   ++K+ + +NAEEYI+ P+A+
Sbjct:  170 LKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDCVENKLHPVYHIKILMMKKELEKDPALATESWDRFLPKFKKKNVKQKKPKSKEKKPYTPFPPPQPPSKVDLQLESGEYFLSDKKKSEKMWQEKQEKQTEKSTENKRKRDASFVPPEEPLKINNNNSNKSENDKEGLTELTKSLKSKTKEFKKQKKTHEKVNAEEYIAVPSAD 378          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: Q9FT93_ARATH (KRR1 small subunit processome component OS=Arabidopsis thaliana GN=F8L15_150 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 9.650e-118
Identity = 125/151 (82.78%), Postives = 142/151 (94.04%), Query Frame = -2
Query: 1175 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1627
            WD+DPNIDRW IEKFDP+WNP G+ E S+FST+FP+YREKYLQE WP+V+SALKEYG+A +LNLVEGSMTVSTTRKTRDPY+I+KARDLIKLLSRSVPAPQAIKIL+DE+QCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLK   +++LT
Sbjct:   30 WDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKA--LEILT 178          

HSP 2 Score: 183.341 bits (464), Expect = 9.650e-118
Identity = 138/205 (67.32%), Postives = 171/205 (83.41%), Query Frame = -1
Query:  486 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQDS--NKSENKEEDVXX-XXXXXXXXXKEFGKQKSLQNINAEEYISAP 1091
            ++ALEILT+CYILVQG+TVAAMG FKGLKQ+RRIVEDCV+N MHPVYHIK LMMKKELEKDPAL NE+WDRFLPTF+KKNV+ KK KSKEKKPYTPFPPPQ PSKID +LESGEYF+S+KKK  KKW+EKQEKQ++K+ ENKRKR+A+F+PP+EP+  +S  NKSE+ + D+         +  +   ++K+ + +NAEEYI+ P
Sbjct:  171 LKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPKSKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPMNNNSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAGP 375          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: I1JIP3_SOYBN (KRR1 small subunit processome component OS=Glycine max PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.450e-117
Identity = 147/184 (79.89%), Postives = 162/184 (88.04%), Query Frame = -2
Query: 1175 LKIKMEVENA---EKVNLEQXXXXXXXXXXXXPWDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1717
            ++I  E EN    E   LEQK+K KGKHDKPKPWD+DPNID WKIEKFDPSWN  G+LEVSSFST+FP+YREKYLQEAWP VKSALKE+G+A ELNLVEGSMTVSTTRKTRDPY+IIKARDLIKLLSRS+PAPQAIKILDDEMQCDIIKI  +VRNKERFVKRRQ LVGPNSSTLK   +++LT
Sbjct:    1 MEIHSEEENGVANESQALEQKEKRKGKHDKPKPWDDDPNIDHWKIEKFDPSWNDGGMLEVSSFSTLFPQYREKYLQEAWPMVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSLPAPQAIKILDDEMQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKA--LEILT 182          

HSP 2 Score: 178.718 bits (452), Expect = 1.450e-117
Identity = 155/217 (71.43%), Postives = 183/217 (84.33%), Query Frame = -1
Query:  441 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQDSNKSENKEEDVXXXXXXXXXXXKEFGKQKSLQNINAEEYISAPAAEQPSKRKRKSKHT 1091
            ++ALEILT CYILVQGNTVAAMGSFKGLKQVRRIVE+C+ NKMHPVY+IK+LMMKKELEKDPAL  ENWDRFLP FKKKNV+ KKV +K+KKPYTPFPPPQQPSKID +LE+GEYFLS K+K AK W+EKQEKQA+KTAENKRKRE AF+PPKEP     +KSE+   +VA +A S K+K K+FGK+KS +NINAE YI   ++EQ S +K K + +
Sbjct:  175 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKVNTKQKKPYTPFPPPQQPSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKREEAFIPPKEPANL-VDKSEDANSNVADMAMSLKKKTKKFGKRKSEENINAETYIIG-SSEQASGKKSKKQRS 389          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: A0A0B2RZN5_GLYSO (KRR1 small subunit processome component OS=Glycine soja GN=glysoja_004115 PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 1.450e-117
Identity = 147/184 (79.89%), Postives = 162/184 (88.04%), Query Frame = -2
Query: 1175 LKIKMEVENA---EKVNLEQXXXXXXXXXXXXPWDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1717
            ++I  E EN    E   LEQK+K KGKHDKPKPWD+DPNID WKIEKFDPSWN  G+LEVSSFST+FP+YREKYLQEAWP VKSALKE+G+A ELNLVEGSMTVSTTRKTRDPY+IIKARDLIKLLSRS+PAPQAIKILDDEMQCDIIKI  +VRNKERFVKRRQ LVGPNSSTLK   +++LT
Sbjct:    1 MEIHSEEENGVANESQALEQKEKRKGKHDKPKPWDDDPNIDHWKIEKFDPSWNDGGMLEVSSFSTLFPQYREKYLQEAWPMVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSLPAPQAIKILDDEMQCDIIKISGMVRNKERFVKRRQHLVGPNSSTLKA--LEILT 182          

HSP 2 Score: 178.718 bits (452), Expect = 1.450e-117
Identity = 155/217 (71.43%), Postives = 183/217 (84.33%), Query Frame = -1
Query:  441 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQDSNKSENKEEDVXXXXXXXXXXXKEFGKQKSLQNINAEEYISAPAAEQPSKRKRKSKHT 1091
            ++ALEILT CYILVQGNTVAAMGSFKGLKQVRRIVE+C+ NKMHPVY+IK+LMMKKELEKDPAL  ENWDRFLP FKKKNV+ KKV +K+KKPYTPFPPPQQPSKID +LE+GEYFLS K+K AK W+EKQEKQA+KTAENKRKRE AF+PPKEP     +KSE+   +VA +A S K+K K+FGK+KS +NINAE YI   ++EQ S +K K + +
Sbjct:  175 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMLNKMHPVYNIKVLMMKKELEKDPALAQENWDRFLPKFKKKNVKQKKVNTKQKKPYTPFPPPQQPSKIDIQLETGEYFLSNKRKSAKIWQEKQEKQAEKTAENKRKREEAFIPPKEPANL-VDKSEDANSNVADMAMSLKKKTKKFGKRKSEENINAETYIIG-SSEQASGKKSKKQRS 389          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: A0A0A0K7G6_CUCSA (KRR1 small subunit processome component OS=Cucumis sativus GN=Csa_7G237820 PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.066e-117
Identity = 126/151 (83.44%), Postives = 139/151 (92.05%), Query Frame = -2
Query: 1175 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1627
            WDEDPNIDRWK+EKFDPSWN  G+LEVSSFST+FP YREKYL++ WP VKSALKE+GI  ELNL+EGSMTVSTTRKTRDPY+I+KARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVR KERFVKRR+ LVGPNSSTLK   +++LT
Sbjct:   24 WDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKA--LEILT 172          

HSP 2 Score: 186.808 bits (473), Expect = 3.066e-117
Identity = 152/212 (71.70%), Postives = 182/212 (85.85%), Query Frame = -1
Query:  456 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQDSNKSENKEEDVXXXXXXXXXXXKEFGKQKSLQNINAEEYISAPAAEQPSKRKR 1091
            ++ALEILT CYILVQGNTVAAMGSFKGLKQVRR+VE+C+ NKMHPVY+IKILMM+KEL  DPAL NENWDRFLP FKKK V+ KKVKSK KK YTPFPPPQQPS+ID +LE+GEYFL+EKKK AKKW++KQEKQA+KTA+NKRKREAAFVPPKE  KQD+ K +  + D+A +AKS K+KAK FGK+K+ + IN E YI A ++++P  +KR
Sbjct:  165 LKALEILTGCYILVQGNTVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLPKFKKKTVKQKKVKSKPKKQYTPFPPPQQPSQIDIQLETGEYFLNEKKKSAKKWQDKQEKQAEKTADNKRKREAAFVPPKEAPKQDT-KPDGDKNDIAEMAKSLKEKAKAFGKRKAAETINPEAYI-ASSSDRPLFKKR 374          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: Q8LBT7_ARATH (KRR1 small subunit processome component OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 4.383e-117
Identity = 125/151 (82.78%), Postives = 142/151 (94.04%), Query Frame = -2
Query: 1175 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1627
            WD+DPNIDRW IEKFDP+WNP G+ E S+FST+FP+YREKYLQE WP+V+SALKEYG+A +LNLVEGSMTVSTTRKTRDPY+I+KARDLIKLLSRSVPAPQAIKIL+DE+QCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLK   +++LT
Sbjct:   30 WDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQECWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILEDEVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKA--LEILT 178          

HSP 2 Score: 181.415 bits (459), Expect = 4.383e-117
Identity = 137/205 (66.83%), Postives = 170/205 (82.93%), Query Frame = -1
Query:  486 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQDS--NKSENKEEDVXX-XXXXXXXXXKEFGKQKSLQNINAEEYISAP 1091
            ++ALEILT+CYILVQG+TVAAMG FKGLKQ+RRIVEDCV+N MHPVYHIK LMMKKELEKDPAL NE+WDRFLPTF+KKNV+ KK KSKEKKPYTPFPPPQ PSKID +LESGEYF+ +KKK  KKW+EKQEKQ++K+ ENKRKR+A+F+PP+EP+  +S  NKSE+ + D+         +  +   ++K+ + +NAEEYI+ P
Sbjct:  171 LKALEILTNCYILVQGSTVAAMGPFKGLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQKKPKSKEKKPYTPFPPPQPPSKIDMQLESGEYFMRDKKKSEKKWQEKQEKQSEKSTENKRKRDASFLPPEEPMNNNSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAGP 375          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: K4B7X7_SOLLC (KRR1 small subunit processome component OS=Solanum lycopersicum GN=Solyc02g069950.2 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 2.093e-116
Identity = 125/151 (82.78%), Postives = 137/151 (90.73%), Query Frame = -2
Query: 1175 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1627
            WD D +ID WKIEKFDPSWN  GLLEVSSFST+FP+YREKYLQE WP VK ALKE+GIA ELNLVEGSMTVSTT KTRDPY+I+KARDLIKLLSRSVPAPQA+KIL+DEMQCDIIKIGN+VRNKERFVKRRQ LVGPNSSTLK   +++LT
Sbjct:   29 WD-DESIDHWKIEKFDPSWNQSGLLEVSSFSTLFPQYREKYLQECWPTVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLIKLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKA--LEILT 176          

HSP 2 Score: 189.504 bits (480), Expect = 2.093e-116
Identity = 146/201 (72.64%), Postives = 175/201 (87.06%), Query Frame = -1
Query:  489 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQDSNKSENKEEDVXXXXXXXXXXXKEFGKQKSLQNINAEEYISA 1091
            ++ALEILT CYILVQGNTVAAMGSFKGLKQ RR++EDC+ NKMHP++HIKILM+K+EL K+PAL +ENWDRFLP FKKKNV+ KKV+SKEKKPYTPFPPPQ PSKIDQ+LESGEYFLS+KKK+AK+WEEKQ KQA+K AENK+KRE AFVPP+EP   + + S   ++DV A+A S K+KAKEF KQKS+  INAEE+I+ 
Sbjct:  169 LKALEILTGCYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILMLKRELAKNPALASENWDRFLPQFKKKNVKQKKVQSKEKKPYTPFPPPQPPSKIDQQLESGEYFLSDKKKMAKQWEEKQVKQAEKVAENKKKREEAFVPPEEPKTHNQDVSNVDKDDVTAMASSLKRKAKEFRKQKSIDKINAEEFIAG 369          
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Match: M1BWL0_SOLTU (KRR1 small subunit processome component OS=Solanum tuberosum GN=PGSC0003DMG400021187 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 2.128e-116
Identity = 125/151 (82.78%), Postives = 137/151 (90.73%), Query Frame = -2
Query: 1175 WDEDPNIDRWKIEKFDPSWNPDGLLEVSSFSTIFPRYREKYLQEAWPKVKSALKEYGIAAELNLVEGSMTVSTTRKTRDPYVIIKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKVCMIDVLT 1627
            WD D +ID WKIEKFDPSWN  GLLEVSSFST+FP+YREKYLQE WP VK ALKE+GIA ELNLVEGSMTVSTT KTRDPY+I+KARDLIKLLSRSVPAPQA+KIL+DEMQCDIIKIGN+VRNKERFVKRRQ LVGPNSSTLK   +++LT
Sbjct:   29 WD-DESIDHWKIEKFDPSWNQSGLLEVSSFSTLFPQYREKYLQECWPNVKGALKEHGIACELNLVEGSMTVSTTMKTRDPYIIVKARDLIKLLSRSVPAPQAVKILNDEMQCDIIKIGNMVRNKERFVKRRQYLVGPNSSTLKA--LEILT 176          

HSP 2 Score: 189.119 bits (479), Expect = 2.128e-116
Identity = 146/201 (72.64%), Postives = 175/201 (87.06%), Query Frame = -1
Query:  489 MQALEILTSCYILVQGNTVAAMGSFKGLKQVRRIVEDCVENKMHPVYHIKILMMKKELEKDPALKNENWDRFLPTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIDQELESGEYFLSXXXXXXXXXXXXXXXXXXXXXXXKRKREAAFVPPKEPVKQDSNKSENKEEDVXXXXXXXXXXXKEFGKQKSLQNINAEEYISA 1091
            ++ALEILT CYILVQGNTVAAMGSFKGLKQ RR++EDC+ NKMHP++HIKILM+K+EL K+PAL +ENWDRFLP FKKKNV+ KKV+SKEKKPYTPFPPPQ PSKIDQ+LESGEYFLS+KKK+AK+WEEKQ KQA+K AENK+KRE AFVPP+EP   + + S   E+DV A+A S K+KAKEF KQKS+  I+AEE+I+ 
Sbjct:  169 LKALEILTGCYILVQGNTVAAMGSFKGLKQARRVIEDCILNKMHPLHHIKILMLKRELAKNPALASENWDRFLPQFKKKNVKQKKVQSKEKKPYTPFPPPQPPSKIDQQLESGEYFLSDKKKMAKQWEEKQVKQAEKVAENKKKREEAFVPPEEPKTHNQDVSNVDEDDVTAMASSLKRKAKEFRKQKSIDKIDAEEFIAG 369          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 20
Match NameE-valueIdentityDescription
KRR1_SCHPO6.695e-8163.16KRR1 small subunit processome component homolog OS... [more]
KRR1_YEASZ3.903e-7862.99KRR1 small subunit processome component OS=Sacchar... [more]
KRR1_YEASV3.903e-7862.99KRR1 small subunit processome component OS=Sacchar... [more]
KRR1_YEAST3.903e-7862.99KRR1 small subunit processome component OS=Sacchar... [more]
KRR1_YEAS83.903e-7862.99KRR1 small subunit processome component OS=Sacchar... [more]
KRR1_YEAS63.903e-7862.99KRR1 small subunit processome component OS=Sacchar... [more]
KRR1_YEAS13.903e-7862.99KRR1 small subunit processome component OS=Sacchar... [more]
KRR1_BOVIN4.968e-7665.28KRR1 small subunit processome component homolog OS... [more]
KRR1_MOUSE6.588e-7663.89KRR1 small subunit processome component homolog OS... [more]
KRR1_HUMAN2.960e-7563.89KRR1 small subunit processome component homolog OS... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0094852 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
R0FF04_9BRAS2.196e-11879.47KRR1 small subunit processome component OS=Capsell... [more]
M0SMA3_MUSAM2.704e-11885.43KRR1 small subunit processome component OS=Musa ac... [more]
A0A087G5Q9_ARAAL5.908e-11885.43KRR1 small subunit processome component OS=Arabis ... [more]
Q9FT93_ARATH9.650e-11882.78KRR1 small subunit processome component OS=Arabido... [more]
I1JIP3_SOYBN1.450e-11779.89KRR1 small subunit processome component OS=Glycine... [more]
A0A0B2RZN5_GLYSO1.450e-11779.89KRR1 small subunit processome component OS=Glycine... [more]
A0A0A0K7G6_CUCSA3.066e-11783.44KRR1 small subunit processome component OS=Cucumis... [more]
Q8LBT7_ARATH4.383e-11782.78KRR1 small subunit processome component OS=Arabido... [more]
K4B7X7_SOLLC2.093e-11682.78KRR1 small subunit processome component OS=Solanum... [more]
M1BWL0_SOLTU2.128e-11682.78KRR1 small subunit processome component OS=Solanum... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 117..137
IPR024166Ribosomal RNA assembly KRR1PANTHERPTHR12581HIV-1 REV BINDING PROTEIN 2, 3coord: 3..216
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 2..74

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094852 ID=g.barbadense_cottongen_reftransV1_0094852; Name=g.barbadense_cottongen_reftransV1_0094852; organism=Gossypium barbadense; type=contig; length=1955bp
CCCCTCAAAAGGTTACATGATAAGAAATAATCAATAATTATATTCAAGTT
CCAACATGCCTCATGTGCAAACCTAATAAATAAGCTCGTACTTGAATCTA
AATGTACAAAAAATGTGCAAGCTAGAAAGTGTCAAGACATTCCAATGGGC
ACCAAAACATTGACTAAAAATCCAAATGTACAACAATTTCCATGATTCAA
ACTCTGAAACTATGATATCATGTAAGTTATATGATCAATTATCCCAAAAA
CATAGTCGGGTGATCAACTATATTTAAGCTCCAACATGATATATCAAGGT
TTTTTTACTAGCCTAATATCAGCCTTTTTTCTCAACAATTGCACATCCAC
ACCACGGATTGCCAAAAGCCAGCAAATATTTAGCAAACTTTGTCATACCA
TGAACTTGTCTACAACAAACTTTCTAGTTTACCTATACTAGGTATGCTTG
GATTTCCTTTTCCTTTTGGAAGGCTGTTCGGCAGCAGGGGCAGAAATATA
TTCTTCAGCATTGATATTTTGCAAAGATTTTTGCTTTCCGAATTCCTTGG
CCTTTTGCTTCGAGGACTTAGCAAGGGCAGCAACATCTTCCTCCTTGTTC
TCTGACTTGTTAGAATCTTGCTTCACGGGTTCCTTGGGAGGAACAAATGC
TGCTTCTCTTTTTCTTTTGTTTTCAGCTGTTTTCTGTGCCTGCTTCTCTT
GCTTCTCTTCCCACTTCTTCGCTAATTTCTTTTTCTCACTCAAGAAGTAT
TCTCCAGATTCCAGTTCTTGATCAATCTTACTAGGTTGCTGAGGAGGAGG
GAATGGTGTATATGGTTTCTTCTCTTTACTCTTAACCTTCTTCGTTTGAA
CATTTTTCTTCTTGAATGTTGGAAGAAACCTATCCCAGTTTTCATTTTTG
AGTGCTGGATCCTTCTCAAGCTCTTTCTTCATCATGAGAATCTTGATATG
GTATACTGGATGCATCTTATTTTCTACGCAGTCCTCCACAATCCTCCTGA
CTTGTTTCAAACCTTTAAATGAACCCATAGCAGCAACAGTGTTTCCCTGA
ACAAGAATGTAGCAGCTTGTCAATATTTCAAGTGCCTGCATCCACTAATG
AAGGTGATTATTTTATAGTAATAGTATTTTCTCATGCCTCAACATAGCCT
TATAAGGGGATTATTTTAGAATCGTGTTAAGACATCAATCATACAAACCT
TCAAAGTCGAAGAATTTGGCCCCACAAGGCGCTGCCTTCTTTTAACAAAT
CGTTCCTTATTGCGAACCAAGTTTCCAATTTTTATGATGTCACACTGCAT
TTCATCATCAAGTATTTTGATGGCCTGAGGGGCAGGAACACTTCTCGATA
GAAGCTTGATGAGATCCCTGGCCTTAATGATAACATATGGATCCCTAGTT
TTTCTTGTTGTTGAAACTGTCATAGACCCTTCAACCAAGTTGAGCTCAGC
AGCAATACCATATTCTTTCAAAGCAGATTTAACCTTTGGCCAAGCTTCTT
GCAAGTATTTTTCTCGGTAACGAGGGAAGATGGTGGAAAAAGAGCTGACT
TCCAGTAACCCATCGGGGTTCCAAGAAGGGTCAAACTTTTCAATCTTCCA
ACGGTCTATGTTTGGGTCTTCGTCCCATGGCTTTGGCTTATCGTGTTTCC
CTTTATGCTTCTTTTTCTGTTCCAGATTTACTTTTTCTGCATTCTCTACC
TCCATTTTAATTTTCAAAAACCCTGTAATTGCGTTAAATAAAGAAACAAA
AGTTACTTCTGTTTGTCGCAGCCTTCGTTATCCGGACTCGGCAACTTGTG
GTGCAGTAGCCGTGTCGACACGATACACACTGGATACGGGTCAGATCCGG
CATAAACCAGCGGACACGGCAGTGGGTGAGAACTGTGATGAAAAGAGAAG
AGAAAAAAAACTTACTGCAGGGACGAGACAGAAGAGGGACGATGGTAGGA
GGAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR024166rRNA_assembly_KRR1
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding