g.barbadense_cottongen_reftransV1_0094849, g.barbadense_cottongen_reftransV1_0094849 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094849
Unique Nameg.barbadense_cottongen_reftransV1_0094849
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2623
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Gossypium barbadense CottonGen RefTrans V12016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL2016-11-02
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKB1_HUMAN (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 1.352e-11
Identity = 34/86 (39.53%), Postives = 42/86 (48.84%), Query Frame = 3 
Query:  873 PMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDM 1130
            P  F W  GG  V+L GSF  WS+     P+      F  I  L  G HQ+KFFVD +W HD  +P V    G VN I   ++ D 
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSK----LPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 160
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKB1_PONAB (5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.389e-11
Identity = 34/86 (39.53%), Postives = 42/86 (48.84%), Query Frame = 3 
Query:  873 PMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDM 1130
            P  F W  GG  V+L GSF  WS+     P+      F  I  L  G HQ+KFFVD +W HD  +P V    G VN I   ++ D 
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSK----LPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 160
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKB1_BOVIN (5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.810e-11
Identity = 33/86 (38.37%), Postives = 42/86 (48.84%), Query Frame = 3 
Query:  873 PMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDM 1130
            P  F W  GG  V+L GSF  WS+     P+      F  I  L  G HQ+KFFVD +W HD  +P V    G VN +   ++ D 
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSK----LPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVKKTDF 160
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: SNF4_KLULA (Nuclear protein SNF4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SNF4 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.097e-11
Identity = 64/278 (23.02%), Postives = 121/278 (43.53%), Query Frame = 3 
Query: 1254 IAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDS--------LKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCI---CRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQAL 2054
            I  FL   T+Y++LP S +++ LD  + VK++ +IL +  +  APLWD+   +F G+L++ DF+ +++   +                     K  +  ++  N      R +   P+D+        L +  +K++      +P+      +     ++ + T   ILK +   C+  ++       L++P+  + +      I  +N     M  P   +   L+L     VSS+PIVDE   L+++Y   D+  L K   Y  + L   SV +AL
Sbjct:   27 IRVFLQSKTSYDVLPVSYRLIVLDTSLLVKKSLNILLQNNVVSAPLWDAQTSKFAGLLTSSDFINVIQYYFH------------------NPDKFELVDKLQLNGLKDIERAIGIQPYDTRSIHPFRPLYEACVKMIESRSRRIPLIDQDE-ETQREIVVSVLTQYRILKFVALNCKEIRY-------LKRPLRELDI------ISTNNIMSCQMSTPVIDVIQLLTL--AGGVSSVPIVDEQGKLVNVYEAVDVLGLIKGGIYNDLSL---SVGEAL 267
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.308e-11
Identity = 32/86 (37.21%), Postives = 41/86 (47.67%), Query Frame = 3 
Query:  873 PMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDM 1130
            P    W  GG  VF+ GSF  WS  IP+         F  I  L  G HQ+KFFVD +W HD  +P V    G +N +   ++ D 
Sbjct:   78 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDF 160
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A078E0T6_BRANA (BnaC05g06550D protein OS=Brassica napus GN=BnaC05g06550D PE=4 SV=1)

HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 357/489 (73.01%), Postives = 412/489 (84.25%), Query Frame = 3 
Query:  810 MFASAPDSGNGNSGVS-RSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDVSSQM-----EAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246
            MF S  D+  GNS  S + LL P RFVWPYGG RVFL GSFTRW+EH+PMSP+EGCPTVFQVIC+L+PGYHQ+KF+VD EWRHDEHQPFV  + GV+NTIFI   PDM P +FSP     SNMD+DD S ++     ++ P +S ADLE+SRHRI+A LS  TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD  KGQFVGVL  LDF+LILRELG  GS+LTEEELETHT++AWKEGK HISRQ DG  R YPR LV  GP+D+LKDVALKIL   VA VP+ +SS  DG +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+ALSLL+QA VSSIP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+     FNGQRC MCL SD+L KV+ERLANPGVRRLVIVEAG+KRVEGI+SLSD+FRFLLG+
Sbjct:    1 MFGSTVDTSRGNSAASGQQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFYVDGEWRHDEHQPFVNANGGVMNTIFIT-GPDMPPAAFSP-----SNMDVDDFSQRVVDPSQDSIPRMSAADLEMSRHRISALLSNRTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTVAAWKEGKAHISRQYDGIGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSLLVQAGVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLGKVIERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGL 483
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A0D3C8M2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0
Identity = 357/489 (73.01%), Postives = 412/489 (84.25%), Query Frame = 3 
Query:  810 MFASAPDSGNGNSGVS-RSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDVSSQM-----EAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246
            MF S  D+  GNS  S + LL P RFVWPYGG RVFL GSFTRW+EH+PMSP+EGCPTVFQVIC+L+PGYHQ+KF+VD EWRHDEHQPFV  + GV+NTIFI   PDM P +FSP     SNMD+DD S ++     ++ P +S ADLE+SRHRI+A LS  TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD  KGQFVGVL  LDF+LILRELG  GS+LTEEELETHT++AWKEGK HISRQ DG  R YPR LV  GP+D+LKDVALKIL   VA VP+ +SS  DG +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+ALSLL+QA VSSIP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+     FNGQRC MCL SD+L KV+ERLANPGVRRLVIVEAG+KRVEGI+SLSD+FRFLLG+
Sbjct:    1 MFGSTVDTSRGNSAASGQQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFYVDGEWRHDEHQPFVNANGGVMNTIFIT-GPDMPPAAFSP-----SNMDVDDFSQRVVDPSQDSIPRMSAADLEMSRHRISALLSNRTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTVAAWKEGKAHISRQYDGIGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSLLVQAGVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLGKVIERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGL 483
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A078GBB2_BRANA (BnaC08g42850D protein OS=Brassica napus GN=BnaC08g42850D PE=4 SV=1)

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 352/488 (72.13%), Postives = 410/488 (84.02%), Query Frame = 3 
Query:  810 MFASAPDSGNGNSGVSRSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDVSSQM-----EAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246
            MF S   +  GNS  S  L+ P RFVWPYGG+RVFL GSFTRW+EH+PMSP+EGCP+VFQVIC+L+PGYHQ+KF+VD EWRHDEHQPFV G+ GV+NTI I   PDM+P  FSP     SNMD+DD S QM     ++ P +S  DLE+SRHRI+  LS  TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD  KGQFVGVL  LDF+LIL+ELG  GS+LTEEELETHTI+AWKEGK HISRQ DG  R YPR LV  GP+D+LKDVA+KIL   VA VP+ +SS  D  +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+ALSLL+QAEVS+IP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+     FNGQRCQMCL SD+L KV+ERLANPGVRRLVIVEAG+KRVEGI+SLSD+F+FLLG+
Sbjct:    1 MFGSTLANNRGNSAASAQLVTPTRFVWPYGGTRVFLSGSFTRWTEHVPMSPLEGCPSVFQVICNLTPGYHQYKFYVDGEWRHDEHQPFVNGNGGVMNTILITL-PDMVPTGFSP-----SNMDVDDFSQQMADPSQDSIPRMSAVDLEMSRHRISVLLSTCTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILKELGTHGSNLTEEELETHTIAAWKEGKAHISRQYDGTGRPYPRPLVQVGPYDNLKDVAMKILQNKVAAVPVIYSSLQDESYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSLLVQAEVSAIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGMFNGQRCQMCLRSDSLGKVIERLANPGVRRLVIVEAGSKRVEGIISLSDVFKFLLGL 482
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A0D3DYC3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 352/488 (72.13%), Postives = 410/488 (84.02%), Query Frame = 3 
Query:  810 MFASAPDSGNGNSGVSRSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDVSSQM-----EAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246
            MF S   +  GNS  S  L+ P RFVWPYGG+RVFL GSFTRW+EH+PMSP+EGCP+VFQVIC+L+PGYHQ+KF+VD EWRHDEHQPFV G+ GV+NTI I   PDM+P  FSP     SNMD+DD S QM     ++ P +S  DLE+SRHRI+  LS  TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD  KGQFVGVL  LDF+LIL+ELG  GS+LTEEELETHTI+AWKEGK HISRQ DG  R YPR LV  GP+D+LKDVA+KIL   VA VP+ +SS  D  +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+ALSLL+QAEVS+IP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+     FNGQRCQMCL SD+L KV+ERLANPGVRRLVIVEAG+KRVEGI+SLSD+F+FLLG+
Sbjct:    1 MFGSTLANNRGNSAASAQLVTPTRFVWPYGGTRVFLSGSFTRWTEHVPMSPLEGCPSVFQVICNLTPGYHQYKFYVDGEWRHDEHQPFVNGNGGVMNTILITL-PDMVPTGFSP-----SNMDVDDFSQQMADPSQDSIPRMSAVDLEMSRHRISVLLSTCTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILKELGTHGSNLTEEELETHTIAAWKEGKAHISRQYDGTGRPYPRPLVQVGPYDNLKDVAMKILQNKVAAVPVIYSSLQDESYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSLLVQAEVSAIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGMFNGQRCQMCLRSDSLGKVIERLANPGVRRLVIVEAGSKRVEGIISLSDVFKFLLGL 482
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A068V4A6_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_100 OS=Coffea canephora GN=GSCOC_T00015356001 PE=4 SV=1)

HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0
Identity = 350/462 (75.76%), Postives = 402/462 (87.01%), Query Frame = 3 
Query:  861 SLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLD-DVSSQMEAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANF-FNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLL 2240
            ++L+P RFVWP+GG RVF+ GSFTRW+ HIPMSPMEGCPTVFQV+ +L+PGYHQFKFFVD EWRHDEHQPFV G+YGVVNTIF+  E DM+P  FSPE PGRSNMD+D D   ++E  PTI+  D+E+SRHRI+ FL+ H AYELLP+SGKV+ALDV++ VKQAFHIL+EQGI VAPLWD   GQFVGVLSALDF++IL+ELGN GS+LTEEELETH+ISAWKEGK+++ RQ+DGN R Y RRLV AGP+DSLKDVA+KIL   VATVPI HSSS DG FPQLLHLA+LS ILKCICRHF+HSSSSLPILQQPI S PLGT VPKIG+S+ +PLAML   A+L AALSLL+QAEVSSIPIVDENDSL DIY RSDITALAKD+AYAQI L E+S+ +ALQLGQDAN  +NGQRCQMCL SD LHKVMERLA PGVRRLVIVEAG+KRVEGI+SLSD+F+FLL
Sbjct:   21 TILVPTRFVWPHGGRRVFVSGSFTRWTNHIPMSPMEGCPTVFQVVYNLTPGYHQFKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPSESDMVPTFFSPEMPGRSNMDVDNDPFLRVERVPTITQNDIELSRHRISMFLAMHNAYELLPDSGKVIALDVNLPVKQAFHILYEQGISVAPLWDFRNGQFVGVLSALDFIMILQELGNHGSNLTEEELETHSISAWKEGKLNLMRQIDGNLRQYRRRLVHAGPYDSLKDVAVKILENKVATVPIIHSSSQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPISSFPLGTWVPKIGDSDGKPLAMLSSNASLNAALSLLVQAEVSSIPIVDENDSLQDIYCRSDITALAKDRAYAQIQLSELSIQEALQLGQDANAPYNGQRCQMCLPSDPLHKVMERLALPGVRRLVIVEAGSKRVEGIISLSDVFKFLL 482
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
AAKB1_HUMAN1.352e-1139.535'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_PONAB1.389e-1139.535'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_BOVIN1.810e-1138.375'-AMP-activated protein kinase subunit beta-1 OS=... [more]
SNF4_KLULA3.097e-1123.02Nuclear protein SNF4 OS=Kluyveromyces lactis (stra... [more]
AAKB2_HUMAN5.308e-1137.215'-AMP-activated protein kinase subunit beta-2 OS=... [more]

Pages

back to top
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078E0T6_BRANA0.000e+073.01BnaC05g06550D protein OS=Brassica napus GN=BnaC05g... [more]
A0A0D3C8M2_BRAOL0.000e+073.01Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A078GBB2_BRANA0.000e+072.13BnaC08g42850D protein OS=Brassica napus GN=BnaC08g... [more]
A0A0D3DYC3_BRAOL0.000e+072.13Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A068V4A6_COFCA0.000e+075.76Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

Pages

back to top
Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094849 ID=g.barbadense_cottongen_reftransV1_0094849; Name=g.barbadense_cottongen_reftransV1_0094849; organism=Gossypium barbadense; type=contig; length=2623bp
TTTATTTTTATATTTACATTAATATATTTTAAACTGTAAAAAGAAAATAT
CTTTATTCATAATCAGATTCTTCACTAAGAGGCTACAAAATCTTTCGAAG
ATCCAACCAATGTCAACTTCCCTCTAATCTTTCTCTATCCAACTTAGGGT
TTTTTCTTCACTTTTTCCCCTTATAATCCTACATTTTACTTTTTCTAAAA
TCGTCCACTCAAAAAACCCACACAAACTGTCCTTCTTTTAGGGTTTTGGG
TGCAATTCATTATTAAAGTCTTGATTTTGGTGTCGGATCAAGCTCGAATT
GGGTTTTTTTTATGGTCGTCATTTCCGGGGGTGGGATTTTAGGTTGGTTT
TGTAATAGCCATTTGAGTTGTTGACTTTTGAGAATTGAATTTGTTGATTT
CTGAAGGTTTCGATTGGGTTTTGTGGGTGTCACATGTAGAGGATTATTGA
AACTTGCAATGGATTTGTAAGAGCTTCTCATTTGGAGATTTTAGGGCTTT
TTGTGTGGTAATAACTAGAAAAAAAGAAGATATTTTTCTTGGGTTGGTTT
TGATTTGGTGGCTTCTAATTAGTATGCATTAAGGGGTCCTCTGCTCTTTG
TTGTAAAGGATCCCTATTGAACAAAAAGTTAAATGATTTTAAGTTACTAA
TCTTGATCAGTTGAGGTAAAATTTGTCAAGTGCTTTAAATTGCTTGAATT
TTAGTGATTTCCTGGTGAGAAAAGAGGAGAAAAAAACCAAGTGGGAAATT
GTTTGCATTTGAGTTTCTGGTGGACACATAATTTGGTATTTGTGTAAATT
GGGGAGGAAATGTTTGCTTCTGCTCCAGATAGTGGCAATGGAAACAGTGG
AGTTTCAAGGTCACTTTTGATTCCAATGCGCTTCGTTTGGCCTTATGGGG
GAAGTAGAGTGTTTCTCTGTGGCTCCTTTACGAGATGGTCAGAGCATATT
CCTATGTCTCCAATGGAGGGTTGTCCCACTGTATTTCAAGTTATTTGTAG
CTTGAGCCCTGGATACCATCAGTTTAAGTTTTTTGTTGATAACGAATGGC
GGCATGATGAGCACCAGCCTTTTGTAATTGGTGATTATGGTGTGGTTAAC
ACTATCTTTATAGCTAGGGAACCAGATATGCTTCCTCCAAGTTTTAGTCC
TGAGACGCCAGGTAGGTCCAATATGGACCTGGATGATGTTTCTAGTCAAA
TGGAAGCGGCTCCAACAATATCCAATGCAGATTTGGAGGTCTCTCGTCAT
CGTATAGCTGCTTTCTTGTCAAGACACACGGCATATGAGTTGCTTCCTGA
GTCAGGCAAGGTTGTTGCCTTGGACGTTGATATAGCTGTGAAGCAAGCAT
TCCATATTCTGCATGAACAGGGAATTCCCGTGGCTCCTCTCTGGGATTCT
TGCAAGGGCCAGTTTGTTGGAGTCCTTAGTGCTCTGGACTTTGTTCTTAT
CTTAAGAGAGTTGGGGAATCTTGGTTCGGATTTGACAGAAGAAGAATTGG
AGACGCACACGATATCAGCTTGGAAGGAGGGAAAGGTGCATATTAGCAGA
CAGATGGATGGCAATGCCAGATCATATCCTAGACGTCTTGTTTGTGCTGG
GCCACATGATTCTTTGAAGGATGTTGCTTTGAAGATTTTGAACGGTAATG
TAGCTACGGTTCCCATCACTCACTCTTCGTCACCAGATGGTTTGTTTCCG
CAGCTGCTACACCTTGCCACCTTGTCTGAAATCCTAAAATGTATTTGCAG
ACATTTTAAACATTCTTCTAGCTCCTTGCCCATTCTTCAACAACCAATTT
GTTCAATTCCCTTGGGTACTCGGGTACCAAAAATCGGGGAATCAAATCGT
CGGCCATTGGCAATGCTGCGACCAACTGCCACTCTTGGTGCTGCCTTATC
ATTGTTAATTCAAGCTGAGGTAAGTTCGATACCAATAGTGGATGAGAATG
ACTCGTTGCTTGACATATATTCACGAAGTGATATAACTGCTTTGGCTAAG
GATAAAGCTTATGCACAAATTCATCTTGATGAAATGAGTGTTCATCAGGC
CTTGCAACTGGGTCAAGATGCAAATTTTTTCAATGGACAAAGATGTCAGA
TGTGTCTAGGATCGGATACTTTGCACAAAGTGATGGAGCGGCTGGCAAAT
CCAGGGGTTAGGAGACTCGTGATTGTGGAAGCCGGCACCAAGCGTGTAGA
AGGAATAGTTTCGTTGAGTGATATCTTTAGGTTCTTGCTTGGTGTTTAGC
TCAAAAAACCCTTTGAGGGTCACTACATTGGACATCGTGGAATATCCATT
AATGCCATCGACTTTGGTTTTCCTCATCCATCCATCCATCCATCTCTCCT
ATGGTGTCTTCTTATCTGTTACTCTTTACAGTCTTTTGATTGGCAGGGCT
TCATCACTCTGAGCCCAATCCTTTTTTTCTTTCTTCTTTAGGATAGAAAG
TTTCAAAAAGCAAGAAGTGAATTTGTAAATTGTGAGAAGTCAAAAAATTT
CCCTTTCATTTTAACTCAACCATGCTGCCAAAACCGCAGCTCTCATGTTT
ATGCTAACAGAAAAGATTGAAACCCCAAAGTGAGGGAAAGAAAAAAAATA
GTGAAAGGGGGGGGGGGGGAAAA
back to top