g.barbadense_cottongen_reftransV1_0094849, g.barbadense_cottongen_reftransV1_0094849 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: SNF4_ARATH (Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1) HSP 1 Score: 750.74 bits (1937), Expect = 0.000e+0 Identity = 366/488 (75.00%), Postives = 414/488 (84.84%), Query Frame = 3 Query: 810 MFASAPDSGNGNSGVSRSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDV-----SSQMEAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246 MF S DS GNS S LL P RFVWPYGG RVFL GSFTRW+EH+PMSP+EGCPTVFQVIC+L+PGYHQ+KFFVD EWRHDEHQPFV G+ GVVNTIFI PDM+P FSPET GRSNMD+DDV EA P +S DLE+SRHRI+ LS TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD KGQFVGVL LDF+LILRELG GS+LTEEELETHTI+AWKEGK HISRQ DG+ R YPR LV GP+D+LKDVALKIL VA VP+ +SS DG +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+AL+LL+QAEVSSIP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+ FNGQRC MCL SD+L KVMERLANPGVRRLVIVEAG+KRVEGI+SLSD+F+FLLG+ Sbjct: 1 MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT-GPDMVPAGFSPETLGRSNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKG1_BOVIN (5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 6.582e-38 Identity = 116/361 (32.13%), Postives = 177/361 (49.03%), Query Frame = 3 Query: 1203 EAAPTISNADL----EVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTE-EELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHF---KHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV*LKKP 2261 ++ P + N L E + +F+ H Y+L+P S K+V D + VK+AF L G+ APLWDS K FVG+L+ DF+ IL S L + ELE H I W+E + S + LVC P+ SL D ++ + +P+ S + L+ +L + + LK F + S SL LQ +GT +AM+R T + AL + +Q VS++P+VDE ++DIYS+ D+ LA +K Y + ++SV +ALQ +++F G C +TL ++ RL V RLV+V+ V+GIVSLSDI + L+ +KP Sbjct: 8 DSYPAVENEHLQETPESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALVQIYELEEHKIETWREVYLQDSF----------KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLY--ILTHKRILKFLKLFITEFPKPEFMSKSLEELQ-------IGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQ--HRSHYFEG--VLKCYLHETLETIINRLVEAEVHRLVVVDEN-DVVKGIVSLSDILQALVLTGGEKP 330
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKG1_MOUSE (5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 1.013e-37 Identity = 114/354 (32.20%), Postives = 175/354 (49.44%), Query Frame = 3 Query: 1203 EAAPTISNADL----EVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTE-EELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHF---KHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLL 2240 E++P + N E + +F+ H Y+L+P S K+V D + VK+AF L G+ APLWDS K FVG+L+ DF+ IL S L + ELE H I W+E V++ + LVC P+ SL D ++ + +P+ S + L+ +L + + LK F + S SL LQ +GT +AM+R T + AL + +Q VS++P+VDE ++DIYS+ D+ LA +K Y + ++SV +ALQ +++F G C +TL ++ RL V RLV+V+ V+GIVSLSDI + L+ Sbjct: 7 ESSPALENEHFQETPESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQDSF--------KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLY--ILTHKRILKFLKLFITEFPKPEFMSKSLQELQ-------IGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQ--HRSHYFEG--VLKCYLHETLETIINRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQALV 322
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKG1_HUMAN (5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.149e-37 Identity = 110/332 (33.13%), Postives = 167/332 (50.30%), Query Frame = 3 Query: 1257 AAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTE-EELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHF---KHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLL 2240 +F+ H Y+L+P S K+V D + VK+AF L G+ APLWDS K FVG+L+ DF+ IL S L + ELE H I W+E V++ + LVC P+ SL D ++ + +P+ S + L+ +L + + LK F + S SL LQ +GT +AM+R T + AL + +Q VS++P+VDE ++DIYS+ D+ LA +K Y + ++SV +ALQ +++F G C +TL ++ RL V RLV+V+ V+GIVSLSDI + L+ Sbjct: 30 TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQDSF--------KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLY--ILTHKRILKFLKLFITEFPKPEFMSKSLEELQ-------IGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQ--HRSHYFEG--VLKCYLHETLETIINRLVEAEVHRLVVVDEN-DVVKGIVSLSDILQALV 323
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKG1_PIG (5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2) HSP 1 Score: 149.058 bits (375), Expect = 1.312e-37 Identity = 112/339 (33.04%), Postives = 170/339 (50.15%), Query Frame = 3 Query: 1257 AAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTE-EELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHF---KHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV*LKKP 2261 +F+ H Y+L+P S K+V D + VK+AF L G+ APLWDS K FVG+L+ DF+ IL S L + ELE H I W+E V++ + LVC P+ SL D ++ + +P+ S + L+ +L + + LK F + S SL LQ +GT +AM+R T + AL + +Q VS++P+VDE ++DIYS+ D+ LA +K Y + ++SV +ALQ +++F G C +TL ++ RL V RLV+V+ V+GIVSLSDI + L+ +KP Sbjct: 30 TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQDSF--------KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLY--ILTHKRILKFLKLFITEFPKPEFMSKSLEELQ-------IGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQ--HRSHYFEG--VLKCYLHETLETIINRLVEAEVHRLVVVDEN-DVVKGIVSLSDILQALVLTGGEKP 330
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKG1_RAT (5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3) HSP 1 Score: 147.517 bits (371), Expect = 4.136e-37 Identity = 110/332 (33.13%), Postives = 166/332 (50.00%), Query Frame = 3 Query: 1257 AAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTE-EELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHF---KHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLL 2240 F+ H Y+L+P S K+V D + VK+AF L G+ APLWDS K FVG+L+ DF+ IL S L + ELE H I W+E V++ + LVC P+ SL D ++ + +P+ S + L+ +L + + LK F + S SL LQ +GT +AM+R T + AL + +Q VS++P+VDE ++DIYS+ D+ LA +K Y + ++SV +ALQ +++F G C +TL ++ RL V RLV+V+ V+GIVSLSDI + L+ Sbjct: 29 TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQDSF--------KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLY--ILTHKRILKFLKLFITEFPKPEFMSKSLEELQ-------IGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQ--HRSHYFEG--VLKCYLHETLEAIINRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQALV 322
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: PRKAG_DICDI (5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3) HSP 1 Score: 144.821 bits (364), Expect = 6.699e-35 Identity = 112/375 (29.87%), Postives = 184/375 (49.07%), Query Frame = 3 Query: 1140 SFSPETPGRSNMDLDDVSSQMEAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILR------ELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVD-ENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLG 2243 S S + G N++L S ++ + + +E + FL HT Y+++P SGKVV LD +AVK AF+ L E GI APLW+S + F G+++ DF+ IL + N+ D+ +ET W+E + + R P L+ P +L D A +L + +P+ + +LH+ T S IL + + F P L + + SIP+G+ +G + + L L LL + ++S++PI+D E ++D+YS+SD+T ++K + L+ + VHQ L + ++ C D L V+ER V RLV +++ +K+VEGI+SLSDI +LL Sbjct: 232 SISTVSEGLENLNL---KSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETF----WRE--ISVER---------PSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNS----ILHILTHSRILAFMMKSF-------PQLPEKLLSIPIGS----LGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLSTFTKL-WQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILNYLLN 570
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKG2_MOUSE (5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 2.217e-31 Identity = 96/327 (29.36%), Postives = 162/327 (49.54%), Query Frame = 3 Query: 1263 FLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTE-EELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLL 2240 F+ H Y+++P S K+V D + VK+AF L G+ APLW+S K FVG+L+ DF+ IL S + + ELE H I W+E +++ + LV P SL D ++ + +P+ D + L++ T ILK + + F ++Q + + +GT +A + P + AL++ ++ +S++P+VDE+ ++DIYS+ D+ LA +K Y + +++V QALQ + +F G C +TL +++R+ V RLV+V V GI+SLSDI + L+ Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLFDAVYSLIKNKIHRLPVI-----DPISGNALYILTHKRILKFL-QLFMSDMPKPAFMKQNLDELGIGT---------YHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ--HRSQYFEG--VVKCSKLETLETIVDRIVRAEVHRLVVVNEADSIV-GIISLSDILQALI 552
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKG2_HUMAN (5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.877e-30 Identity = 95/327 (29.05%), Postives = 161/327 (49.24%), Query Frame = 3 Query: 1263 FLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTE-EELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLL 2240 F+ H Y+++P S K+V D + VK+AF L G+ APLW+S K FVG+L+ DF+ IL S + + ELE H I W+E +++ + LV P SL D ++ + +P+ D + L++ T ILK + + F ++Q + + +GT +A + P + AL++ ++ +S++P+VDE+ ++DIYS+ D+ LA +K Y + +++V QALQ + +F G C + L +++R+ V RLV+V V GI+SLSDI + L+ Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLFDAVYSLIKNKIHRLPVI-----DPISGNALYILTHKRILKFL-QLFMSDMPKPAFMKQNLDELGIGT---------YHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ--HRSQYFEG--VVKCNKLEILETIVDRIVRAEVHRLVVVNEADSIV-GIISLSDILQALI 555
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Match: AAKG2_PONAB (5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 3.550e-30 Identity = 94/327 (28.75%), Postives = 160/327 (48.93%), Query Frame = 3 Query: 1263 FLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTE-EELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANFFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLL 2240 F+ H Y+++P S K+V D + VK+AF L G+ APLW+S K FVG+L+ DF+ IL S + + ELE H I W+E +++ + LV P SL D ++ + +P+ D + L++ T ILK + + F ++Q + + +GT +A + P + AL++ ++ +S++P+VDE+ ++DIYS+ D+ LA +K Y + +++V QALQ + +F G C + L +++R+ V RLV+ V GI+SLSDI + L+ Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLLDAVYSLIKNKIHRLPVI-----DPISGNALYILTHKRILKFL-QLFMSDMPKPAFMKQNLDELGIGT---------YHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ--HRSQYFEG--VVKCNKLEILETIVDRIVRAEVHRLVVANEADSIV-GIISLSDILQALI 510
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A078E0T6_BRANA (BnaC05g06550D protein OS=Brassica napus GN=BnaC05g06550D PE=4 SV=1) HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0 Identity = 357/489 (73.01%), Postives = 412/489 (84.25%), Query Frame = 3 Query: 810 MFASAPDSGNGNSGVS-RSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDVSSQM-----EAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246 MF S D+ GNS S + LL P RFVWPYGG RVFL GSFTRW+EH+PMSP+EGCPTVFQVIC+L+PGYHQ+KF+VD EWRHDEHQPFV + GV+NTIFI PDM P +FSP SNMD+DD S ++ ++ P +S ADLE+SRHRI+A LS TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD KGQFVGVL LDF+LILRELG GS+LTEEELETHT++AWKEGK HISRQ DG R YPR LV GP+D+LKDVALKIL VA VP+ +SS DG +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+ALSLL+QA VSSIP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+ FNGQRC MCL SD+L KV+ERLANPGVRRLVIVEAG+KRVEGI+SLSD+FRFLLG+ Sbjct: 1 MFGSTVDTSRGNSAASGQQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFYVDGEWRHDEHQPFVNANGGVMNTIFIT-GPDMPPAAFSP-----SNMDVDDFSQRVVDPSQDSIPRMSAADLEMSRHRISALLSNRTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTVAAWKEGKAHISRQYDGIGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSLLVQAGVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLGKVIERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGL 483
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A0D3C8M2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 725.702 bits (1872), Expect = 0.000e+0 Identity = 357/489 (73.01%), Postives = 412/489 (84.25%), Query Frame = 3 Query: 810 MFASAPDSGNGNSGVS-RSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDVSSQM-----EAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246 MF S D+ GNS S + LL P RFVWPYGG RVFL GSFTRW+EH+PMSP+EGCPTVFQVIC+L+PGYHQ+KF+VD EWRHDEHQPFV + GV+NTIFI PDM P +FSP SNMD+DD S ++ ++ P +S ADLE+SRHRI+A LS TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD KGQFVGVL LDF+LILRELG GS+LTEEELETHT++AWKEGK HISRQ DG R YPR LV GP+D+LKDVALKIL VA VP+ +SS DG +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+ALSLL+QA VSSIP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+ FNGQRC MCL SD+L KV+ERLANPGVRRLVIVEAG+KRVEGI+SLSD+FRFLLG+ Sbjct: 1 MFGSTVDTSRGNSAASGQQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVICNLTPGYHQYKFYVDGEWRHDEHQPFVNANGGVMNTIFIT-GPDMPPAAFSP-----SNMDVDDFSQRVVDPSQDSIPRMSAADLEMSRHRISALLSNRTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTVAAWKEGKAHISRQYDGIGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSLLVQAGVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGIFNGQRCHMCLRSDSLGKVIERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGL 483
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A078GBB2_BRANA (BnaC08g42850D protein OS=Brassica napus GN=BnaC08g42850D PE=4 SV=1) HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0 Identity = 352/488 (72.13%), Postives = 410/488 (84.02%), Query Frame = 3 Query: 810 MFASAPDSGNGNSGVSRSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDVSSQM-----EAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246 MF S + GNS S L+ P RFVWPYGG+RVFL GSFTRW+EH+PMSP+EGCP+VFQVIC+L+PGYHQ+KF+VD EWRHDEHQPFV G+ GV+NTI I PDM+P FSP SNMD+DD S QM ++ P +S DLE+SRHRI+ LS TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD KGQFVGVL LDF+LIL+ELG GS+LTEEELETHTI+AWKEGK HISRQ DG R YPR LV GP+D+LKDVA+KIL VA VP+ +SS D +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+ALSLL+QAEVS+IP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+ FNGQRCQMCL SD+L KV+ERLANPGVRRLVIVEAG+KRVEGI+SLSD+F+FLLG+ Sbjct: 1 MFGSTLANNRGNSAASAQLVTPTRFVWPYGGTRVFLSGSFTRWTEHVPMSPLEGCPSVFQVICNLTPGYHQYKFYVDGEWRHDEHQPFVNGNGGVMNTILITL-PDMVPTGFSP-----SNMDVDDFSQQMADPSQDSIPRMSAVDLEMSRHRISVLLSTCTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILKELGTHGSNLTEEELETHTIAAWKEGKAHISRQYDGTGRPYPRPLVQVGPYDNLKDVAMKILQNKVAAVPVIYSSLQDESYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSLLVQAEVSAIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGMFNGQRCQMCLRSDSLGKVIERLANPGVRRLVIVEAGSKRVEGIISLSDVFKFLLGL 482
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A0D3DYC3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0 Identity = 352/488 (72.13%), Postives = 410/488 (84.02%), Query Frame = 3 Query: 810 MFASAPDSGNGNSGVSRSLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLDDVSSQM-----EAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDAN----FFNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLLGV 2246 MF S + GNS S L+ P RFVWPYGG+RVFL GSFTRW+EH+PMSP+EGCP+VFQVIC+L+PGYHQ+KF+VD EWRHDEHQPFV G+ GV+NTI I PDM+P FSP SNMD+DD S QM ++ P +S DLE+SRHRI+ LS TAYELLPESGKV+ALDV++ VKQAFHIL+EQGIP+APLWD KGQFVGVL LDF+LIL+ELG GS+LTEEELETHTI+AWKEGK HISRQ DG R YPR LV GP+D+LKDVA+KIL VA VP+ +SS D +PQLLHLA+LS ILKCICR+F+HSSSSLPILQQPICSIPLGT VP+IGES+ +PLA LRP A+LG+ALSLL+QAEVS+IP+VD+NDSL+DIYSRSDITALAKDKAYAQIHLD+M+VHQALQLGQDA+ FNGQRCQMCL SD+L KV+ERLANPGVRRLVIVEAG+KRVEGI+SLSD+F+FLLG+ Sbjct: 1 MFGSTLANNRGNSAASAQLVTPTRFVWPYGGTRVFLSGSFTRWTEHVPMSPLEGCPSVFQVICNLTPGYHQYKFYVDGEWRHDEHQPFVNGNGGVMNTILITL-PDMVPTGFSP-----SNMDVDDFSQQMADPSQDSIPRMSAVDLEMSRHRISVLLSTCTAYELLPESGKVIALDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILKELGTHGSNLTEEELETHTIAAWKEGKAHISRQYDGTGRPYPRPLVQVGPYDNLKDVAMKILQNKVAAVPVIYSSLQDESYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALSLLVQAEVSAIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASPPYGMFNGQRCQMCLRSDSLGKVIERLANPGVRRLVIVEAGSKRVEGIISLSDVFKFLLGL 482
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Match: A0A068V4A6_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_100 OS=Coffea canephora GN=GSCOC_T00015356001 PE=4 SV=1) HSP 1 Score: 723.776 bits (1867), Expect = 0.000e+0 Identity = 350/462 (75.76%), Postives = 402/462 (87.01%), Query Frame = 3 Query: 861 SLLIPMRFVWPYGGSRVFLCGSFTRWSEHIPMSPMEGCPTVFQVICSLSPGYHQFKFFVDNEWRHDEHQPFVIGDYGVVNTIFIAREPDMLPPSFSPETPGRSNMDLD-DVSSQMEAAPTISNADLEVSRHRIAAFLSRHTAYELLPESGKVVALDVDIAVKQAFHILHEQGIPVAPLWDSCKGQFVGVLSALDFVLILRELGNLGSDLTEEELETHTISAWKEGKVHISRQMDGNARSYPRRLVCAGPHDSLKDVALKILNGNVATVPITHSSSPDGLFPQLLHLATLSEILKCICRHFKHSSSSLPILQQPICSIPLGTRVPKIGESNRRPLAMLRPTATLGAALSLLIQAEVSSIPIVDENDSLLDIYSRSDITALAKDKAYAQIHLDEMSVHQALQLGQDANF-FNGQRCQMCLGSDTLHKVMERLANPGVRRLVIVEAGTKRVEGIVSLSDIFRFLL 2240 ++L+P RFVWP+GG RVF+ GSFTRW+ HIPMSPMEGCPTVFQV+ +L+PGYHQFKFFVD EWRHDEHQPFV G+YGVVNTIF+ E DM+P FSPE PGRSNMD+D D ++E PTI+ D+E+SRHRI+ FL+ H AYELLP+SGKV+ALDV++ VKQAFHIL+EQGI VAPLWD GQFVGVLSALDF++IL+ELGN GS+LTEEELETH+ISAWKEGK+++ RQ+DGN R Y RRLV AGP+DSLKDVA+KIL VATVPI HSSS DG FPQLLHLA+LS ILKCICRHF+HSSSSLPILQQPI S PLGT VPKIG+S+ +PLAML A+L AALSLL+QAEVSSIPIVDENDSL DIY RSDITALAKD+AYAQI L E+S+ +ALQLGQDAN +NGQRCQMCL SD LHKVMERLA PGVRRLVIVEAG+KRVEGI+SLSD+F+FLL Sbjct: 21 TILVPTRFVWPHGGRRVFVSGSFTRWTNHIPMSPMEGCPTVFQVVYNLTPGYHQFKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPSESDMVPTFFSPEMPGRSNMDVDNDPFLRVERVPTITQNDIELSRHRISMFLAMHNAYELLPDSGKVIALDVNLPVKQAFHILYEQGISVAPLWDFRNGQFVGVLSALDFIMILQELGNHGSNLTEEELETHSISAWKEGKLNLMRQIDGNLRQYRRRLVHAGPYDSLKDVAVKILENKVATVPIIHSSSQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPISSFPLGTWVPKIGDSDGKPLAMLSSNASLNAALSLLVQAEVSSIPIVDENDSLQDIYCRSDITALAKDRAYAQIQLSELSIQEALQLGQDANAPYNGQRCQMCLPSDPLHKVMERLALPGVRRLVIVEAGSKRVEGIISLSDVFKFLL 482 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0094849 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094849 ID=g.barbadense_cottongen_reftransV1_0094849; Name=g.barbadense_cottongen_reftransV1_0094849; organism=Gossypium barbadense; type=contig; length=2623bpback to top |