g.barbadense_cottongen_reftransV1_0094846, g.barbadense_cottongen_reftransV1_0094846 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_MOUSE (Sister chromatid cohesion protein DCC1 OS=Mus musculus GN=DSCC1 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.493e-41 Identity = 115/324 (35.49%), Postives = 164/324 (50.62%), Query Frame = -3 Query: 490 LRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYS---SDEASTAMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLND---WSLDSLVEDKVVSVLESDG--FPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1434 +RG DE AVLC+K KTY +K TSN + IP C T + E + + + EL P+L KLK +L EN Y S + A Y +DL+N +QAS++E+ A LQ L+A EI GYWRI++ D +++L H + L D WSLD + + L+ G P +++ HCL YG R + D + LDA ++C A +L+ K + F E W + +PE M D L+G L ++ + L V LP DRF+ LF R KW +D+ PYI+DL + ALL KY+R S Sbjct: 70 IRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIP--GCKTPDQLKEEETPSAIVHTEIFGFSNNYWELRRCRPKLKKLKRLLMENTYEGPDSQKEEDASRSKYTTEDLLNHIQASEEEIMAQLQVLNACEIGGYWRILE---FDYEIKLLNHVTQLVDSESWSLDRV---PLTVCLQELGPLEPEEMIEHCLKCYGKRYVDK-DDVYFELDADKICRVTAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLKGLALVDRNSRPEIIFLLKVDDLPEGTQDRFNSLFSLREKWTEEDITPYIQDLCGEKQTIGALLTKYSRSS 384
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_DANRE (Sister chromatid cohesion protein DCC1 OS=Danio rerio GN=dscc1 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.136e-38 Identity = 110/323 (34.06%), Postives = 161/323 (49.85%), Query Frame = -3 Query: 490 VTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEAST---AMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGF--PRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1440 + +RG DE AVLC++ KTY +K TSN + +P C T + Q+ + + EL PRL KLK +L EN Y A G Y +DL+ ++QAS +EL+A L + A EIDG+WRI+D D +++L H + L D S + + LE G P+ ++ HCLN YG R + + ++ LD +VC A+ +L+ K + F E W + +PE M D L G L ++ + L V LP +RF+ LF R KW D+EPYI+DL ++ ALL K+ R S Sbjct: 58 LIIRGDKDEHAVLCSEDKTYDLKIADTSNLLLFVP--GCKTPDQLSDIPASPQLMHTQIWGFSNCYWELRRQRPRLKKLKKLLMENPYDGPPVGMQEEAPGLKYSMEDLLERIQASKEELEAHLGNVHACEIDGFWRILD---FDYEMKLLGHVTQLVDSESWSFSKVPLSVCLEELGSLEPKAMIEHCLNCYGRRHSDEDNQVMYALDEDKVCRATAQLLLQNAVKFNLSEFQEVWQQSVPEGMGTRLDQLRGLALIDRSSKPETISLLRVEDLPEDTLERFNSLFSLREKWTQDDIEPYIQDLCGEKQTTGALLTKHARSS 375
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_XENTR (Sister chromatid cohesion protein DCC1 OS=Xenopus tropicalis GN=dscc1 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.326e-37 Identity = 104/324 (32.10%), Postives = 159/324 (49.07%), Query Frame = -3 Query: 490 VTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGD--LYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLND---WSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSR-VEEAMDGGVWRLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1440 + +RG + AVLC++ KTY +K TSN + IP C T + + + + + EL P+L KLK +L EN Y+ E D L+ +DL+N +QAS++EL L+A+ A I+G+WR++D D +++L H + L D WS + + L S P +++ HCL YG R ++E G + LD ++C A +L+ K + F E W + +PE M D L+G L ++ + L LP +RF+ LF R KW D+ PYI+DL + ALL KY R S Sbjct: 59 LVIRGDKSDHAVLCSQDKTYDLKIADTSNLLLFIP--GCKTPDQLPADQQPLTIINCEIAGFSNHYWELRRCRPKLKKLKKLLMENTYNGPENERESQDNSLHTTEDLLNMIQASNEELVDHLKAIHACSINGFWRLLD---FDYEMKLLNHITQLIDSESWSFSKVPLPVCLQELRSLE-PEEMIEHCLTCYGKRLIDEGTGGDFFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPEGMNTRLDQLKGLALVDRTSRPETIFLLKTEDLPEDTQERFNTLFGMREKWAEADIAPYIKDLCGEKQTIGALLTKYARSS 376
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_HUMAN (Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 5.218e-36 Identity = 109/327 (33.33%), Postives = 168/327 (51.38%), Query Frame = -3 Query: 490 VTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYS---SDEASTAMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLND---WSLDSLVEDKVVSVLESDG--FPRKLVYHCLNVYGSRVEEAMDGGVW-RLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1440 + +RG DE AVLC+K KTY +K TSN + IP C T + E+ + + + EL P+L KLK +L EN Y S + + Y +DL++++QAS++E+ LQ L+A +I GYWRI++ D +++L H + L D WS + + + L+ G P +++ HCL YG + + +G V+ LDA ++C AR +L+ K + F E W + +PE M S D L+G L ++ + L V LP +RF+ LF R KW +D+ PYI+DL + ALL KY+ S Sbjct: 62 LVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIP--GCKTPDQLKKEDSHCNIIHTEIFGFSNNYWELRRRRPKLKKLKKLLMENPYEGPDSQKEKDSNSSKYTTEDLLDQIQASEEEIMTQLQVLNACKIGGYWRILE---FDYEMKLLNHVTQLVDSESWSFGKV---PLNTCLQELGPLEPEEMIEHCLKCYGKKYVD--EGEVYFELDADKICRAAARMLLQNAVKFNLAEFQEVWQQSVPEGMVTSLDQLKGLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYSHSS 378
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_DICDI (Probable sister chromatid cohesion protein DCC1 OS=Dictyostelium discoideum GN=DDB_G0271400 PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.784e-34 Identity = 93/346 (26.88%), Postives = 172/346 (49.71%), Query Frame = -3 Query: 496 QRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVA-PGNMELVEVAPRLDKLKSILS----ENLYSSDEASTAMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSR-----------------VEEAMDGGVWRLDARRVCVHFARGIL---REGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVL----TEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTR 1446 +++ ++G ++AVLCT KT++++ TSNS+ L+ S ++ IKVA ++EL E+ P+L+ LK +L +N ++ +G + +D++I+++Q+S+ E++ L L+ + + ++ E Y IL ++L + + W LD++ DK + + + P ++ HCL +Y + ++ D + LD +VC+ A+ +L + K E FM+ W +P E+QP+F ML+G + + E V+ ++ S LPT P RF LF+ +W D+EP+I+ PG S E +L Y+R Sbjct: 40 KKLVIKGSLTDEAVLCTDDKTFTIRAGHTSNSMLLV-------SKDTNK------------IKVALQYHLELTEIQPKLNVLKDLLYSKAIDNSLDFEDDENLLG--FSFDEIIDRIQSSEKEIQQYLLKLNTLIYKNRYIVLSENYEFKILELILSEATIGAWKLDNIPIDKCIENIRA---PEFIIKHCLQLYSKQKSPTNSGGGGEEIKGGGGDDNNDENICSLDFNKVCIFRAKQLLTLSNKSNMKFEDFMDNWKDTLPIEIQPNFSMLKGIAILIPSSSTNPKEKSVKFINESILPTIPKARFKELFQISTRWSIDDIEPFIKSTIPPGNSLEQFILTYSR 361
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_XENLA (Sister chromatid cohesion protein DCC1 OS=Xenopus laevis GN=dscc1 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 4.024e-33 Identity = 102/324 (31.48%), Postives = 155/324 (47.84%), Query Frame = -3 Query: 490 VTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDE---ASTAMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLND---WSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1440 + +RG + AVLC++ KTY +K TSN + IP C + + V + + EL P+L KLK +L EN Y+ E S+ LY +DL++ +Q+S +EL L+A+ A I G WR++D D +++L H + L D WS + + L S P +++ HCL YG R+ E G + LD ++C A +L+ K + F E W + +P+ M D L+G L ++ + L LP +RF+ LF R KW D+ PYI+DL + ALL KY R S Sbjct: 59 LVIRGDKSDHAVLCSQDKTYDLKIADTSNLLLFIP--GCKLPDQLPADQQPLSVIHCEIAGFSNHYWELRRCRPKLKKLKKLLMENTYNGPENESESSQETSLYTTEDLLSVIQSSTEELMDHLKAIHACNIKGIWRLLD---FDYEMKLLNHITQLIDSESWSFSKVPLQVCLQELRSLE-PEEMIEHCLTCYGKRLMEE-GGDCFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPDGMNTRLDQLKGLALVDRTSRPETIFLLQTEDLPEDTQERFNTLFGMREKWTEADIAPYIQDLCGEKQTIGALLTKYARSS 375
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_YEAST (Sister chromatid cohesion protein DCC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCC1 PE=1 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 5.504e-10 Identity = 52/205 (25.37%), Postives = 100/205 (48.78%), Query Frame = -3 Query: 487 DGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSL-VEDKVVSVL-----ESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREG----KRKMESFMEEWLRMIPEEMQPSF------DMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQ 1053 DG I+ + ++ L +LL +++ L L VED +V E + + R+++ LN + + +EA + WRL + + LR+ ++ F+ +W + P P F DML G + V+ ++ S+LP P +RF +LF+ +++W+ +D++P I +LN G+ ++ ++KY RR + Sbjct: 174 DGVLCILSQDFLFKALHVLLMSAMAESLDLQHLNVEDTHHAVGKDIEDEFNPYTREIIETVLNKFAVQEQEA-ENNTWRLRIPFIAQWYGIQALRKYVSGISMPIDEFLIKWKSLFP----PFFPCDIDIDMLRGYHFKP---TDKTVQYIAKSTLPMDPKERFKVLFRLQSQWDLEDIKPLIEELNSRGMKIDSFIMKYARRKR 370
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: I1JVZ0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 471.085 bits (1211), Expect = 7.692e-156 Identity = 253/398 (63.57%), Postives = 308/398 (77.39%), Query Frame = -3 Query: 451 MMEQPHSCCKGAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGEN---YKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGDL----------YKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1605 M P +GAE L ++ P SS+S+ YHP FG +DDL+ LELDEKLL DVL +RV LRGQPDEDAVLCT SKTY++KFVGTSNSV L+PPA+ S E+ +N + V+KV GNMEL+E APRLDKLK +LSE Y +E MG+L Y W+ L++ +QASD EL +GLQALSA+EI+GYWR+VD YMD+IL MLL N+VLNDWSL++L ED+VVS+LESDGFPR L HCL+VYG++V E M VW+LD +RVC+HFAR IL+ GKRK+ESFM+EW + IP+ M P+FD++EGEVLTE+LGVETWVRA SV+SLP+TPA+RFSILF+ER KWEWKDL+PYIRDL VPGLSSE LLLKYTRR+QPS D EPVFSAR Sbjct: 1 MESPPQLGSRGAETLKHIAPGSSISVAYHPSFGPYDDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTLSKTYAMKFVGTSNSVLLVPPANHSEFSENPQKNDSTNDEDKVVVPVLKVVSGNMELIETAPRLDKLKLLLSEKPYKLEEDD--MGNLEENQESRIGLYNWNYLVDNIQASDKELLSGLQALSALEINGYWRLVDGSYMDMILGMLLKNAVLNDWSLNALNEDEVVSILESDGFPRVLARHCLHVYGNKVNECMPSFVWKLDEKRVCIHFAREILKGGKRKLESFMDEWKQKIPDGMHPTFDLVEGEVLTERLGVETWVRAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKVPGLSSEGLLLKYTRRTQPSPDTEPVFSAR 396
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: A0A0B2PHJ1_GLYSO (Sister chromatid cohesion protein DCC1 OS=Glycine soja GN=glysoja_044155 PE=4 SV=1) HSP 1 Score: 471.085 bits (1211), Expect = 7.692e-156 Identity = 253/398 (63.57%), Postives = 308/398 (77.39%), Query Frame = -3 Query: 451 MMEQPHSCCKGAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGEN---YKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGDL----------YKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1605 M P +GAE L ++ P SS+S+ YHP FG +DDL+ LELDEKLL DVL +RV LRGQPDEDAVLCT SKTY++KFVGTSNSV L+PPA+ S E+ +N + V+KV GNMEL+E APRLDKLK +LSE Y +E MG+L Y W+ L++ +QASD EL +GLQALSA+EI+GYWR+VD YMD+IL MLL N+VLNDWSL++L ED+VVS+LESDGFPR L HCL+VYG++V E M VW+LD +RVC+HFAR IL+ GKRK+ESFM+EW + IP+ M P+FD++EGEVLTE+LGVETWVRA SV+SLP+TPA+RFSILF+ER KWEWKDL+PYIRDL VPGLSSE LLLKYTRR+QPS D EPVFSAR Sbjct: 1 MESPPQLGSRGAETLKHIAPGSSISVAYHPSFGPYDDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTLSKTYAMKFVGTSNSVLLVPPANHSEFSENPQKNDSTNDEDKVVVPVLKVVSGNMELIETAPRLDKLKLLLSEKPYKLEEDD--MGNLEENQESRIGLYNWNYLVDNIQASDKELLSGLQALSALEINGYWRLVDGSYMDMILGMLLKNAVLNDWSLNALNEDEVVSILESDGFPRVLARHCLHVYGNKVNECMPSFVWKLDEKRVCIHFAREILKGGKRKLESFMDEWKQKIPDGMHPTFDLVEGEVLTERLGVETWVRAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKVPGLSSEGLLLKYTRRTQPSPDTEPVFSAR 396
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: K4AYM9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g088390.2 PE=4 SV=1) HSP 1 Score: 471.085 bits (1211), Expect = 8.242e-156 Identity = 247/386 (63.99%), Postives = 304/386 (78.76%), Query Frame = -3 Query: 451 GAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTS---HESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGDL-------YKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGG-VWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1575 GA+ +LN+QP +S+SI YH FG HDDL+LLELDEKLL D+L QRVT+RGQPDEDAVLC+++KTY++KFVGTSNS+FLIPP++ S + + E ASVIKV PG+MELVEVAPRLDKLK +LSEN YS DE S +L Y W DL+ KVQASD+EL GL+AL+AVEIDG+WR +DE ++D IL MLLHN+VLNDW L +L ED+V+ VLE+DGFPR++V HCL VYGS+V++ + GG WRL+ R VCVHFAR ILR K K+E FMEEW + +PE M SFD+LEGEVLTEK+G+ET + A SVSSL + PA+RFS LF+E+ KWEWK+L+P++RDL VPGLSSE LLLKYTRRSQPS DAEP+FSAR Sbjct: 13 GADAILNVQPNTSISIAYHQLFGPHDDLMLLELDEKLLPDILNQRVTIRGQPDEDAVLCSQTKTYAIKFVGTSNSLFLIPPSNLSIALGASPNSSEKDHDNAMVASVIKVVPGSMELVEVAPRLDKLKLLLSENPYSFDEVSQMNTELTHKNKGLYSWSDLVEKVQASDEELCTGLRALAAVEIDGFWRSLDENFVDAILNMLLHNAVLNDWLLSALNEDEVLPVLEADGFPREIVKHCLGVYGSKVDDEIRGGCTWRLEERPVCVHFARVILRGEKMKLERFMEEWRKKVPEGMNASFDVLEGEVLTEKIGIETRIYAFSVSSLSSVPAERFSKLFQEKPKWEWKELQPFVRDLKVPGLSSEGLLLKYTRRSQPSADAEPIFSAR 398
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: F4IU60_ARATH (Zinc ion binding protein OS=Arabidopsis thaliana GN=At2g44580 PE=4 SV=1) HSP 1 Score: 442.965 bits (1138), Expect = 4.270e-145 Identity = 232/389 (59.64%), Postives = 285/389 (73.26%), Query Frame = -3 Query: 451 GAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMG--------------DLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1575 GAE ++NL+ S+ I YHP FG H+DL+LLE D+KL+SD+ +QRVTLRG PDEDAVLCTKSKTY++KFVG SNS+FLIPP+ + N SV+K+APGNMELVE +PRLDKLK IL N + + E M LY W DL+N VQASD+EL+ GLQ+LSA+EIDG+WR++DE Y+DVILRMLLHN VL DWS D L ED+VV+ L +D FP +L HCL V+GS+V E W+L+ R VC+HFAR ILRE K ++ESFMEEW + IP+ M+ F+MLEGEVLTEK+G+ET V SV SLP+TP +RFS+LFK R+KWEWKDLEPY+RDL+VP LS E LLLKYTRR+QP DA PVFSAR Sbjct: 6 GAEAVINLKSGYSLPISYHPCFGPHEDLLLLEADDKLVSDIFHQRVTLRGLPDEDAVLCTKSKTYAIKFVGNSNSMFLIPPSIFPGDAQVSDTN-----NNVSVLKIAPGNMELVEASPRLDKLKQILLANPFGAGEVEAMMDVDNDDLDHSGKKDLALYTWSDLVNTVQASDEELRNGLQSLSAIEIDGFWRVIDENYLDVILRMLLHNCVLKDWSFDDLDEDEVVNALVADEFPSQLASHCLRVFGSKVNET---DKWKLEPRLVCLHFARQILREEKMRLESFMEEWKKKIPDGMEERFEMLEGEVLTEKIGIETRVYTFSVRSLPSTPEERFSVLFKHRSKWEWKDLEPYLRDLHVPRLSMEGLLLKYTRRAQPKADAPPVFSAR 386
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: D7LLN3_ARALL (Protein binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483588 PE=4 SV=1) HSP 1 Score: 442.965 bits (1138), Expect = 4.877e-145 Identity = 238/389 (61.18%), Postives = 292/389 (75.06%), Query Frame = -3 Query: 451 KGAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGD-------------LYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1578 +GA+ ++NL+P SSV I YHP FG H+DL+LLE D+KL+SD+ ++RVTLRG PDEDAVLCTKSKTY++KFVG SNS+FLIPP+ C + N + SV+K+APGNMELVEV+PRLDKLK IL N + + E M D LY W DL+N VQASD+EL+ GLQ+LSA+EIDGYWR++DE Y+DVILRMLLHN VL DWS D L ED+VV L +D FP +L HCL V+GS+V E W+L+ R VC+HFAR ILRE K ++ESFMEEW + IP+ M+ F+MLEGEVLTEK+G+ET V SV SLP+TPA+RFS+LFK R+KWEWKDLEPY+RDL+VP LS E LLLKYTRR+QP DA PVFSAR Sbjct: 8 EGAKAVINLKPGSSVPISYHPCFGPHEDLLLLEADDKLVSDIFHERVTLRGLPDEDAVLCTKSKTYAIKFVGNSNSMFLIPPSICPGDAQVSDTN-----SNVSVLKLAPGNMELVEVSPRLDKLKQILLANPFGAGEVEAMMDDDDDLDHNGKRDLALYTWTDLVNTVQASDEELRNGLQSLSAIEIDGYWRVIDENYLDVILRMLLHNCVLKDWSFDDLDEDEVVDALVADEFPSQLAGHCLRVFGSKVNET---DKWKLEPRLVCLHFARQILREEKMRLESFMEEWKKKIPDGMEERFEMLEGEVLTEKIGIETRVYTFSVRSLPSTPAERFSVLFKHRSKWEWKDLEPYLRDLHVPRLSMEGLLLKYTRRAQPKADAPPVFSAR 388 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 7
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094846 ID=g.barbadense_cottongen_reftransV1_0094846; Name=g.barbadense_cottongen_reftransV1_0094846; organism=Gossypium barbadense; type=contig; length=2294bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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