g.barbadense_cottongen_reftransV1_0094846, g.barbadense_cottongen_reftransV1_0094846 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094846
Unique Nameg.barbadense_cottongen_reftransV1_0094846
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2294
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_MOUSE (Sister chromatid cohesion protein DCC1 OS=Mus musculus GN=DSCC1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.493e-41
Identity = 115/324 (35.49%), Postives = 164/324 (50.62%), Query Frame = -3
Query:  490 LRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYS---SDEASTAMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLND---WSLDSLVEDKVVSVLESDG--FPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1434
            +RG  DE AVLC+K KTY +K   TSN +  IP   C T  +   E     +    +   +    EL    P+L KLK +L EN Y    S +   A    Y  +DL+N +QAS++E+ A LQ L+A EI GYWRI++    D  +++L H + L D   WSLD +    +   L+  G   P +++ HCL  YG R  +  D   + LDA ++C   A  +L+   K  +  F E W + +PE M    D L+G  L ++      +  L V  LP    DRF+ LF  R KW  +D+ PYI+DL     +  ALL KY+R S
Sbjct:   70 IRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIP--GCKTPDQLKEEETPSAIVHTEIFGFSNNYWELRRCRPKLKKLKRLLMENTYEGPDSQKEEDASRSKYTTEDLLNHIQASEEEIMAQLQVLNACEIGGYWRILE---FDYEIKLLNHVTQLVDSESWSLDRV---PLTVCLQELGPLEPEEMIEHCLKCYGKRYVDK-DDVYFELDADKICRVTAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLKGLALVDRNSRPEIIFLLKVDDLPEGTQDRFNSLFSLREKWTEEDITPYIQDLCGEKQTIGALLTKYSRSS 384          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_DANRE (Sister chromatid cohesion protein DCC1 OS=Danio rerio GN=dscc1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.136e-38
Identity = 110/323 (34.06%), Postives = 161/323 (49.85%), Query Frame = -3
Query:  490 VTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEAST---AMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGF--PRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1440
            + +RG  DE AVLC++ KTY +K   TSN +  +P   C T  +        Q+    +   +    EL    PRL KLK +L EN Y          A G  Y  +DL+ ++QAS +EL+A L  + A EIDG+WRI+D    D  +++L H + L D    S  +  +   LE  G   P+ ++ HCLN YG R  +  +  ++ LD  +VC   A+ +L+   K  +  F E W + +PE M    D L G  L ++      +  L V  LP    +RF+ LF  R KW   D+EPYI+DL     ++ ALL K+ R S
Sbjct:   58 LIIRGDKDEHAVLCSEDKTYDLKIADTSNLLLFVP--GCKTPDQLSDIPASPQLMHTQIWGFSNCYWELRRQRPRLKKLKKLLMENPYDGPPVGMQEEAPGLKYSMEDLLERIQASKEELEAHLGNVHACEIDGFWRILD---FDYEMKLLGHVTQLVDSESWSFSKVPLSVCLEELGSLEPKAMIEHCLNCYGRRHSDEDNQVMYALDEDKVCRATAQLLLQNAVKFNLSEFQEVWQQSVPEGMGTRLDQLRGLALIDRSSKPETISLLRVEDLPEDTLERFNSLFSLREKWTQDDIEPYIQDLCGEKQTTGALLTKHARSS 375          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_XENTR (Sister chromatid cohesion protein DCC1 OS=Xenopus tropicalis GN=dscc1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.326e-37
Identity = 104/324 (32.10%), Postives = 159/324 (49.07%), Query Frame = -3
Query:  490 VTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGD--LYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLND---WSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSR-VEEAMDGGVWRLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1440
            + +RG   + AVLC++ KTY +K   TSN +  IP   C T  +   +     +    +   +    EL    P+L KLK +L EN Y+  E      D  L+  +DL+N +QAS++EL   L+A+ A  I+G+WR++D    D  +++L H + L D   WS   +     +  L S   P +++ HCL  YG R ++E   G  + LD  ++C   A  +L+   K  +  F E W + +PE M    D L+G  L ++      +  L    LP    +RF+ LF  R KW   D+ PYI+DL     +  ALL KY R S
Sbjct:   59 LVIRGDKSDHAVLCSQDKTYDLKIADTSNLLLFIP--GCKTPDQLPADQQPLTIINCEIAGFSNHYWELRRCRPKLKKLKKLLMENTYNGPENERESQDNSLHTTEDLLNMIQASNEELVDHLKAIHACSINGFWRLLD---FDYEMKLLNHITQLIDSESWSFSKVPLPVCLQELRSLE-PEEMIEHCLTCYGKRLIDEGTGGDFFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPEGMNTRLDQLKGLALVDRTSRPETIFLLKTEDLPEDTQERFNTLFGMREKWAEADIAPYIKDLCGEKQTIGALLTKYARSS 376          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_HUMAN (Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 5.218e-36
Identity = 109/327 (33.33%), Postives = 168/327 (51.38%), Query Frame = -3
Query:  490 VTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYS---SDEASTAMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLND---WSLDSLVEDKVVSVLESDG--FPRKLVYHCLNVYGSRVEEAMDGGVW-RLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1440
            + +RG  DE AVLC+K KTY +K   TSN +  IP   C T  +   E+    +    +   +    EL    P+L KLK +L EN Y    S +   +    Y  +DL++++QAS++E+   LQ L+A +I GYWRI++    D  +++L H + L D   WS   +    + + L+  G   P +++ HCL  YG +  +  +G V+  LDA ++C   AR +L+   K  +  F E W + +PE M  S D L+G  L ++      +  L V  LP    +RF+ LF  R KW  +D+ PYI+DL     +  ALL KY+  S
Sbjct:   62 LVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIP--GCKTPDQLKKEDSHCNIIHTEIFGFSNNYWELRRRRPKLKKLKKLLMENPYEGPDSQKEKDSNSSKYTTEDLLDQIQASEEEIMTQLQVLNACKIGGYWRILE---FDYEMKLLNHVTQLVDSESWSFGKV---PLNTCLQELGPLEPEEMIEHCLKCYGKKYVD--EGEVYFELDADKICRAAARMLLQNAVKFNLAEFQEVWQQSVPEGMVTSLDQLKGLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYSHSS 378          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_DICDI (Probable sister chromatid cohesion protein DCC1 OS=Dictyostelium discoideum GN=DDB_G0271400 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.784e-34
Identity = 93/346 (26.88%), Postives = 172/346 (49.71%), Query Frame = -3
Query:  496 QRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVA-PGNMELVEVAPRLDKLKSILS----ENLYSSDEASTAMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSR-----------------VEEAMDGGVWRLDARRVCVHFARGIL---REGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVL----TEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTR 1446
            +++ ++G   ++AVLCT  KT++++   TSNS+ L+       S ++              IKVA   ++EL E+ P+L+ LK +L     +N    ++    +G  + +D++I+++Q+S+ E++  L  L+ +     + ++ E Y   IL ++L  + +  W LD++  DK +  + +   P  ++ HCL +Y  +                  ++  D  +  LD  +VC+  A+ +L    +   K E FM+ W   +P E+QP+F ML+G  +    +     E  V+ ++ S LPT P  RF  LF+   +W   D+EP+I+    PG S E  +L Y+R
Sbjct:   40 KKLVIKGSLTDEAVLCTDDKTFTIRAGHTSNSMLLV-------SKDTNK------------IKVALQYHLELTEIQPKLNVLKDLLYSKAIDNSLDFEDDENLLG--FSFDEIIDRIQSSEKEIQQYLLKLNTLIYKNRYIVLSENYEFKILELILSEATIGAWKLDNIPIDKCIENIRA---PEFIIKHCLQLYSKQKSPTNSGGGGEEIKGGGGDDNNDENICSLDFNKVCIFRAKQLLTLSNKSNMKFEDFMDNWKDTLPIEIQPNFSMLKGIAILIPSSSTNPKEKSVKFINESILPTIPKARFKELFQISTRWSIDDIEPFIKSTIPPGNSLEQFILTYSR 361          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_XENLA (Sister chromatid cohesion protein DCC1 OS=Xenopus laevis GN=dscc1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.024e-33
Identity = 102/324 (31.48%), Postives = 155/324 (47.84%), Query Frame = -3
Query:  490 VTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDE---ASTAMGDLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLND---WSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREG-KRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRS 1440
            + +RG   + AVLC++ KTY +K   TSN +  IP   C    +   +     V    +   +    EL    P+L KLK +L EN Y+  E    S+    LY  +DL++ +Q+S +EL   L+A+ A  I G WR++D    D  +++L H + L D   WS   +     +  L S   P +++ HCL  YG R+ E   G  + LD  ++C   A  +L+   K  +  F E W + +P+ M    D L+G  L ++      +  L    LP    +RF+ LF  R KW   D+ PYI+DL     +  ALL KY R S
Sbjct:   59 LVIRGDKSDHAVLCSQDKTYDLKIADTSNLLLFIP--GCKLPDQLPADQQPLSVIHCEIAGFSNHYWELRRCRPKLKKLKKLLMENTYNGPENESESSQETSLYTTEDLLSVIQSSTEELMDHLKAIHACNIKGIWRLLD---FDYEMKLLNHITQLIDSESWSFSKVPLQVCLQELRSLE-PEEMIEHCLTCYGKRLMEE-GGDCFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPDGMNTRLDQLKGLALVDRTSRPETIFLLQTEDLPEDTQERFNTLFGMREKWTEADIAPYIQDLCGEKQTIGALLTKYARSS 375          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Match: DCC1_YEAST (Sister chromatid cohesion protein DCC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCC1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 5.504e-10
Identity = 52/205 (25.37%), Postives = 100/205 (48.78%), Query Frame = -3
Query:  487 DGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSL-VEDKVVSVL-----ESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREG----KRKMESFMEEWLRMIPEEMQPSF------DMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQ 1053
            DG   I+ + ++   L +LL +++     L  L VED   +V      E + + R+++   LN +  + +EA +   WRL    +   +    LR+        ++ F+ +W  + P    P F      DML G         +  V+ ++ S+LP  P +RF +LF+ +++W+ +D++P I +LN  G+  ++ ++KY RR +
Sbjct:  174 DGVLCILSQDFLFKALHVLLMSAMAESLDLQHLNVEDTHHAVGKDIEDEFNPYTREIIETVLNKFAVQEQEA-ENNTWRLRIPFIAQWYGIQALRKYVSGISMPIDEFLIKWKSLFP----PFFPCDIDIDMLRGYHFKP---TDKTVQYIAKSTLPMDPKERFKVLFRLQSQWDLEDIKPLIEELNSRGMKIDSFIMKYARRKR 370          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: I1JVZ0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 471.085 bits (1211), Expect = 7.692e-156
Identity = 253/398 (63.57%), Postives = 308/398 (77.39%), Query Frame = -3
Query:  451 MMEQPHSCCKGAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGEN---YKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGDL----------YKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1605
            M   P    +GAE L ++ P SS+S+ YHP FG +DDL+ LELDEKLL DVL +RV LRGQPDEDAVLCT SKTY++KFVGTSNSV L+PPA+ S   E+  +N     +      V+KV  GNMEL+E APRLDKLK +LSE  Y  +E    MG+L          Y W+ L++ +QASD EL +GLQALSA+EI+GYWR+VD  YMD+IL MLL N+VLNDWSL++L ED+VVS+LESDGFPR L  HCL+VYG++V E M   VW+LD +RVC+HFAR IL+ GKRK+ESFM+EW + IP+ M P+FD++EGEVLTE+LGVETWVRA SV+SLP+TPA+RFSILF+ER KWEWKDL+PYIRDL VPGLSSE LLLKYTRR+QPS D EPVFSAR
Sbjct:    1 MESPPQLGSRGAETLKHIAPGSSISVAYHPSFGPYDDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTLSKTYAMKFVGTSNSVLLVPPANHSEFSENPQKNDSTNDEDKVVVPVLKVVSGNMELIETAPRLDKLKLLLSEKPYKLEEDD--MGNLEENQESRIGLYNWNYLVDNIQASDKELLSGLQALSALEINGYWRLVDGSYMDMILGMLLKNAVLNDWSLNALNEDEVVSILESDGFPRVLARHCLHVYGNKVNECMPSFVWKLDEKRVCIHFAREILKGGKRKLESFMDEWKQKIPDGMHPTFDLVEGEVLTERLGVETWVRAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKVPGLSSEGLLLKYTRRTQPSPDTEPVFSAR 396          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: A0A0B2PHJ1_GLYSO (Sister chromatid cohesion protein DCC1 OS=Glycine soja GN=glysoja_044155 PE=4 SV=1)

HSP 1 Score: 471.085 bits (1211), Expect = 7.692e-156
Identity = 253/398 (63.57%), Postives = 308/398 (77.39%), Query Frame = -3
Query:  451 MMEQPHSCCKGAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGEN---YKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGDL----------YKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1605
            M   P    +GAE L ++ P SS+S+ YHP FG +DDL+ LELDEKLL DVL +RV LRGQPDEDAVLCT SKTY++KFVGTSNSV L+PPA+ S   E+  +N     +      V+KV  GNMEL+E APRLDKLK +LSE  Y  +E    MG+L          Y W+ L++ +QASD EL +GLQALSA+EI+GYWR+VD  YMD+IL MLL N+VLNDWSL++L ED+VVS+LESDGFPR L  HCL+VYG++V E M   VW+LD +RVC+HFAR IL+ GKRK+ESFM+EW + IP+ M P+FD++EGEVLTE+LGVETWVRA SV+SLP+TPA+RFSILF+ER KWEWKDL+PYIRDL VPGLSSE LLLKYTRR+QPS D EPVFSAR
Sbjct:    1 MESPPQLGSRGAETLKHIAPGSSISVAYHPSFGPYDDLLFLELDEKLLPDVLNERVVLRGQPDEDAVLCTLSKTYAMKFVGTSNSVLLVPPANHSEFSENPQKNDSTNDEDKVVVPVLKVVSGNMELIETAPRLDKLKLLLSEKPYKLEEDD--MGNLEENQESRIGLYNWNYLVDNIQASDKELLSGLQALSALEINGYWRLVDGSYMDMILGMLLKNAVLNDWSLNALNEDEVVSILESDGFPRVLARHCLHVYGNKVNECMPSFVWKLDEKRVCIHFAREILKGGKRKLESFMDEWKQKIPDGMHPTFDLVEGEVLTERLGVETWVRAFSVASLPSTPAERFSILFRERPKWEWKDLQPYIRDLKVPGLSSEGLLLKYTRRTQPSPDTEPVFSAR 396          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: K4AYM9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g088390.2 PE=4 SV=1)

HSP 1 Score: 471.085 bits (1211), Expect = 8.242e-156
Identity = 247/386 (63.99%), Postives = 304/386 (78.76%), Query Frame = -3
Query:  451 GAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTS---HESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGDL-------YKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGG-VWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1575
            GA+ +LN+QP +S+SI YH  FG HDDL+LLELDEKLL D+L QRVT+RGQPDEDAVLC+++KTY++KFVGTSNS+FLIPP++ S +     +  E        ASVIKV PG+MELVEVAPRLDKLK +LSEN YS DE S    +L       Y W DL+ KVQASD+EL  GL+AL+AVEIDG+WR +DE ++D IL MLLHN+VLNDW L +L ED+V+ VLE+DGFPR++V HCL VYGS+V++ + GG  WRL+ R VCVHFAR ILR  K K+E FMEEW + +PE M  SFD+LEGEVLTEK+G+ET + A SVSSL + PA+RFS LF+E+ KWEWK+L+P++RDL VPGLSSE LLLKYTRRSQPS DAEP+FSAR
Sbjct:   13 GADAILNVQPNTSISIAYHQLFGPHDDLMLLELDEKLLPDILNQRVTIRGQPDEDAVLCSQTKTYAIKFVGTSNSLFLIPPSNLSIALGASPNSSEKDHDNAMVASVIKVVPGSMELVEVAPRLDKLKLLLSENPYSFDEVSQMNTELTHKNKGLYSWSDLVEKVQASDEELCTGLRALAAVEIDGFWRSLDENFVDAILNMLLHNAVLNDWLLSALNEDEVLPVLEADGFPREIVKHCLGVYGSKVDDEIRGGCTWRLEERPVCVHFARVILRGEKMKLERFMEEWRKKVPEGMNASFDVLEGEVLTEKIGIETRIYAFSVSSLSSVPAERFSKLFQEKPKWEWKELQPFVRDLKVPGLSSEGLLLKYTRRSQPSADAEPIFSAR 398          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: F4IU60_ARATH (Zinc ion binding protein OS=Arabidopsis thaliana GN=At2g44580 PE=4 SV=1)

HSP 1 Score: 442.965 bits (1138), Expect = 4.270e-145
Identity = 232/389 (59.64%), Postives = 285/389 (73.26%), Query Frame = -3
Query:  451 GAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMG--------------DLYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1575
            GAE ++NL+   S+ I YHP FG H+DL+LLE D+KL+SD+ +QRVTLRG PDEDAVLCTKSKTY++KFVG SNS+FLIPP+      +    N        SV+K+APGNMELVE +PRLDKLK IL  N + + E    M                LY W DL+N VQASD+EL+ GLQ+LSA+EIDG+WR++DE Y+DVILRMLLHN VL DWS D L ED+VV+ L +D FP +L  HCL V+GS+V E      W+L+ R VC+HFAR ILRE K ++ESFMEEW + IP+ M+  F+MLEGEVLTEK+G+ET V   SV SLP+TP +RFS+LFK R+KWEWKDLEPY+RDL+VP LS E LLLKYTRR+QP  DA PVFSAR
Sbjct:    6 GAEAVINLKSGYSLPISYHPCFGPHEDLLLLEADDKLVSDIFHQRVTLRGLPDEDAVLCTKSKTYAIKFVGNSNSMFLIPPSIFPGDAQVSDTN-----NNVSVLKIAPGNMELVEASPRLDKLKQILLANPFGAGEVEAMMDVDNDDLDHSGKKDLALYTWSDLVNTVQASDEELRNGLQSLSAIEIDGFWRVIDENYLDVILRMLLHNCVLKDWSFDDLDEDEVVNALVADEFPSQLASHCLRVFGSKVNET---DKWKLEPRLVCLHFARQILREEKMRLESFMEEWKKKIPDGMEERFEMLEGEVLTEKIGIETRVYTFSVRSLPSTPEERFSVLFKHRSKWEWKDLEPYLRDLHVPRLSMEGLLLKYTRRAQPKADAPPVFSAR 386          
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Match: D7LLN3_ARALL (Protein binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483588 PE=4 SV=1)

HSP 1 Score: 442.965 bits (1138), Expect = 4.877e-145
Identity = 238/389 (61.18%), Postives = 292/389 (75.06%), Query Frame = -3
Query:  451 KGAEVLLNLQPTSSVSIQYHPFFGSHXXXXXXXXXXXXXXXXLYQRVTLRGQPDEDAVLCTKSKTYSVKFVGTSNSVFLIPPADCSTSHESGGENYKQQVATASVIKVAPGNMELVEVAPRLDKLKSILSENLYSSDEASTAMGD-------------LYKWDDLINKVQASDDELKAGLQALSAVEIDGYWRIVDEKYMDVILRMLLHNSVLNDWSLDSLVEDKVVSVLESDGFPRKLVYHCLNVYGSRVEEAMDGGVWRLDARRVCVHFARGILREGKRKMESFMEEWLRMIPEEMQPSFDMLEGEVLTEKLGVETWVRALSVSSLPTTPADRFSILFKERAKWEWKDLEPYIRDLNVPGLSSEALLLKYTRRSQPSIDAEPVFSAR 1578
            +GA+ ++NL+P SSV I YHP FG H+DL+LLE D+KL+SD+ ++RVTLRG PDEDAVLCTKSKTY++KFVG SNS+FLIPP+ C    +    N     +  SV+K+APGNMELVEV+PRLDKLK IL  N + + E    M D             LY W DL+N VQASD+EL+ GLQ+LSA+EIDGYWR++DE Y+DVILRMLLHN VL DWS D L ED+VV  L +D FP +L  HCL V+GS+V E      W+L+ R VC+HFAR ILRE K ++ESFMEEW + IP+ M+  F+MLEGEVLTEK+G+ET V   SV SLP+TPA+RFS+LFK R+KWEWKDLEPY+RDL+VP LS E LLLKYTRR+QP  DA PVFSAR
Sbjct:    8 EGAKAVINLKPGSSVPISYHPCFGPHEDLLLLEADDKLVSDIFHERVTLRGLPDEDAVLCTKSKTYAIKFVGNSNSMFLIPPSICPGDAQVSDTN-----SNVSVLKLAPGNMELVEVSPRLDKLKQILLANPFGAGEVEAMMDDDDDLDHNGKRDLALYTWTDLVNTVQASDEELRNGLQSLSAIEIDGYWRVIDENYLDVILRMLLHNCVLKDWSFDDLDEDEVVDALVADEFPSQLAGHCLRVFGSKVNET---DKWKLEPRLVCLHFARQILREEKMRLESFMEEWKKKIPDGMEERFEMLEGEVLTEKIGIETRVYTFSVRSLPSTPAERFSVLFKHRSKWEWKDLEPYLRDLHVPRLSMEGLLLKYTRRAQPKADAPPVFSAR 388          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
DCC1_MOUSE3.493e-4135.49Sister chromatid cohesion protein DCC1 OS=Mus musc... [more]
DCC1_DANRE1.136e-3834.06Sister chromatid cohesion protein DCC1 OS=Danio re... [more]
DCC1_XENTR4.326e-3732.10Sister chromatid cohesion protein DCC1 OS=Xenopus ... [more]
DCC1_HUMAN5.218e-3633.33Sister chromatid cohesion protein DCC1 OS=Homo sap... [more]
DCC1_DICDI4.784e-3426.88Probable sister chromatid cohesion protein DCC1 OS... [more]
DCC1_XENLA4.024e-3331.48Sister chromatid cohesion protein DCC1 OS=Xenopus ... [more]
DCC1_YEAST5.504e-1025.37Sister chromatid cohesion protein DCC1 OS=Saccharo... [more]
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BLAST of g.barbadense_cottongen_reftransV1_0094846 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1JVZ0_SOYBN7.692e-15663.57Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2PHJ1_GLYSO7.692e-15663.57Sister chromatid cohesion protein DCC1 OS=Glycine ... [more]
K4AYM9_SOLLC8.242e-15663.99Uncharacterized protein OS=Solanum lycopersicum GN... [more]
F4IU60_ARATH4.270e-14559.64Zinc ion binding protein OS=Arabidopsis thaliana G... [more]
D7LLN3_ARALL4.877e-14561.18Protein binding protein OS=Arabidopsis lyrata subs... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019128Sister chromatid cohesion protein Dcc1PFAMPF09724DUF2036coord: 42..354
e-value: 3.9E-90
score: 302.4
NoneNo IPR availablePANTHERPTHR13395SISTER CHROMATID COHESION PROTEIN DCC1-RELATEDcoord: 14..388
NoneNo IPR availablePANTHERPTHR13395:SF6SISTER CHROMATID COHESION PROTEIN DCC1coord: 14..388

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094846 ID=g.barbadense_cottongen_reftransV1_0094846; Name=g.barbadense_cottongen_reftransV1_0094846; organism=Gossypium barbadense; type=contig; length=2294bp
GAAAAAAAAACGACTTATAATACATTTAACTTTTAATATTATTGAAAGGT
CATACGTCTAGCAGTTAGCTCTTACATGATGTTATAACTGAGGTAATAGT
ATGTGGTTGTCGCGTTTTCTCGTAGACGTCTACTTTACAAGAAAGTGCAC
ACGTCTAGTTTCATTGTACATGTAAATCCTATATTTGCTACTTTATCTCG
ACATAAATAACTAATAAAACATACATGTCAAAATTATACTGACAAATATA
GACTTGCTCTCTCGCAAATGAGAAATTATATGCTTGCATGGCATAGGCAT
ACTTCTAGATCCAGTACCATGGTGAAGGAGGGAGCTAATAATAATAACAA
AGGTCAAACAACTTTCTTCTAGTACTAAATCACTTGATTAGCATGAAACC
ACGACAATGGCACCCTCAGAAAGCCAAGCCTCAATATATACGTATATCTA
TCTAGCACTAAAAACAGGTTCCGCATCAATGCTCGGTTGAGATCTCCGAG
TGTACTTCAGAAGCAAAGCTTCCGATGAAAGCCCGGGTACATTTAGATCC
CTAATGTAGGGCTCTAAATCTTTCCACTCCCATTTAGCTCGTTCTTTGAA
GAGGATGGAAAAACGATCTGCAGGAGTTGTTGGCAATGAGGAAACACTGA
GGGCACGAACCCATGTCTCTACACCAAGCTTCTCAGTCAACACTTCACCT
TCTAACATATCAAAACTGGGCTGCATTTCTTCTGGAATCATCCGCAACCA
TTCTTCCATGAAACTCTCCATCTTCCTCTTTCCTTCTCTCAATATTCCCC
TTGCAAAATGCACGCATACTCGTCTTGCATCCAGTCTCCAAACACCTCCG
TCCATGGCCTCCTCCACCCTACTACCATAGACATTCAAACAATGGTACAC
GAGTTTGCGTGGAAATCCATCCGATTCCAATACACTCACAACTTTATCTT
CAACAAGTGAGTCCAGCGACCAGTCATTCAACACGGAATTATGCAAAAGC
ATCCTAAGAATCACGTCCATGTATTTCTCATCCACAATTCTCCAATATCC
ATCAATCTCCACGGCTGAAAGAGCTTGTAATCCAGCCTTTAATTCATCAT
CGCTAGCTTGAACCTTGTTTATAAGATCATCCCATTTATATAAATCCCCC
ATTGCCGTTGACGCTTCATCAGAGCTGTAAAGATTCTCTGAGAGAATTGA
TTTGAGCTTGTCAAGTCTAGGAGCAACCTCAACAAGCTCCATGTTACCAG
GTGCAACTTTGATGACTGATGCTGTAGCAACTTGTTGCTTGTAATTTTCC
CCGCCACTTTCATGCGACGTTGAACAATCTGCAGGTGGTATAAGGAACAC
AGAGTTTGAAGTTCCTACAAATTTAACCGAGTATGTTTTCGACTTGGTGC
AAAGAACCGCATCTTCATCAGGCTGTCCTCTTAAGGTTACCCTCTGGTAC
AGGACATCAGAGAGAAGTTTCTCATCAAGCTCGAGTAGAACCAAATCATC
ATGGGAACCAAAGAACGGATGATATTGAATAGAAACTGAAGAAGTTGGCT
GGAGATTTAATAACACTTCAGCTCCCTTGCAACACGAATGAGGTTGTTCC
ATCATGCACAGCAAGTAGTTGAGAAAAGCCTAACTTGGAAACTCCAACTC
TACAATAAATTTTTTGTATTTCGAGGGCAAAATAAACTACAACAGCTCAT
CGGTAACTTGTGAGATTATTAATTGCATTACGGGTAAACAAAAAAGGAGT
AACTCTGCTACTATCTGCATTCAATGTTACAAAGCAGTATACGCTATCAA
AAACACAAGGAAGAACATTTGAAACCTCCAACTAGAAAAAACATTATTAG
GATAGGAATCTATTTGCAGGTTGCACCAAACAATCTAATTGAAGAACAAA
ATTTCAATGCTAATGCAAATAGATGGTAAAGTACATTGCCAAAACAATAC
CTCCACACCCAAGACATGAAACATTGCAATTAAAAGATCAAGTCAATGTG
CATAGAAATGAAAATTAAAAAAAGAAAAATAAAACACATTTCAGAGGCCA
ATGGTAAACTAAAAGTAAACTTTAGGTCCAGATAGTATCAAATAAGCTTC
TTTTATGTCATATAAACCTTGGAAGTTGGAACACCGAACTGAGAAGGTTT
CGAAAGAATTGGCATTTCTCGTTTATCTTTCCCTAATTAAAAAAAAAAGG
CAGAGAATCGGAAGCCATAAAATTACCCGTTAATGTCAGACGAAAAATCC
GTGAGCAAGGAACAAAAACCCAAATTCCATAGTCAAATTGAGTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR019128Dcc1