g.barbadense_cottongen_reftransV1_0094779, g.barbadense_cottongen_reftransV1_0094779 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: PCL1_ARATH (Transcription factor LUX OS=Arabidopsis thaliana GN=LUX PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 7.399e-16 Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 268 TLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVS 582 TLK+PR+VW+ +LH++FV V LGI++ AVPK I++LMNV GLTRENVASHLQKYRLYL+R+ G++ Sbjct: 141 TLKRPRLVWTPQLHKRFVDVVAHLGIKN---------------------------------------AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLT 206
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: PCLL_ARATH (Transcription factor BOA OS=Arabidopsis thaliana GN=BOA PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 7.506e-15 Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 268 TLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVS 582 T K+PR+VW+ +LH++FV V LGI++ AVPK I++LMNV GLTRENVASHLQKYRLYL+R+ G++ Sbjct: 138 TSKRPRLVWTPQLHKRFVDVVAHLGIKN---------------------------------------AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRIQGLT 203
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: ARR19_ARATH (Putative two-component response regulator ARR19 OS=Arabidopsis thaliana GN=ARR19 PE=2 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 2.041e-13 Identity = 61/207 (29.47%), Postives = 90/207 (43.48%), Query Frame = 1 Query: 1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKR------------KNEWKDLEQSGSVEEGDRQPKQSEDADY--SSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQL-GIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILEL---MNVPGLTRENVASHLQKYRLYLRR 567 MK +GACDY++KPV+ E + NIWQH+VRKR + W ++ Q + P D D+ S + N GN + +K + +KPR+ W+ ELHQ+F+ A+ + GIE +A PK ++E M + G+TR NVASHLQK+R+ L Sbjct: 122 MKATFYGACDYVVKPVKEEVMANIWQHIVRKRLIFKPDVAPPKPRMTWSEVFQP---VQSHLVPTDGLDRDHFDSITINGGNGIQNMEKKQGKKP----------RKPRMTWTEELHQKFLEAIEIIGGIE---------------------------------------KANPKVLVECLQEMRIEGITRSNVASHLQKHRINLEE 276
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: APRR4_ARATH (Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.731e-13 Identity = 66/208 (31.73%), Postives = 93/208 (44.71%), Query Frame = 1 Query: 4 KGVTHGACDYLIKPVRIEALKNIWQHVVRKRKN---------EWKDLEQSGSVEEGD---RQPKQSEDAD-YSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQH 588 K + +GA DYLIKP+R E L+ +++H+V+K + E E+S SV GD R P +S+ + + NE + ++R S+ KK RVVW ELHQ F+ AV+ LG+E AVPKKIL++M V ++RENVASHLQ L + QH Sbjct: 131 KWMINGAADYLIKPIRPEDLRIVFKHLVKKMRERRSVVTGEAEKAAGEKSSSV--GDSTIRNPNKSKRSSCLEAEVNEEDRHDH----------NDRACASSAKKRRVVWDEELHQNFLNAVDFLGLE---------------------------------------RAVPKKILDVMKVDYISRENVASHLQVTFLIYNIIVHFQQH 287
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: PCL1_ORYSJ (Transcription factor PCL1 OS=Oryza sativa subsp. japonica GN=PCL1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 6.555e-13 Identity = 44/121 (36.36%), Postives = 60/121 (49.59%), Query Frame = 1 Query: 274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATF 636 K+ R+VW+ +LH++FV V LG+++ AVPK I++LMNV GLTRENVASHLQKYRLY++R+ G L+N +P D F Sbjct: 117 KRARLVWTPQLHKRFVEVVAHLGMKN---------------------------------------AVPKTIMQLMNVEGLTRENVASHLQKYRLYVKRMQG-------LSNEGPSPSDHIF 191
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: GLK2_ARATH (Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 4.607e-10 Identity = 38/99 (38.38%), Postives = 49/99 (49.49%), Query Frame = 1 Query: 274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRL 570 KKP+V W+ ELH++FV AV QLG++ +AVP +ILE+MNV LTR NVASHLQKYR + + L Sbjct: 146 KKPKVDWTPELHRKFVQAVEQLGVD---------------------------------------KAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHL 205
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: ARR21_ARATH (Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=3) HSP 1 Score: 65.4698 bits (158), Expect = 1.246e-9 Identity = 35/100 (35.00%), Postives = 48/100 (48.00%), Query Frame = 1 Query: 274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLC 573 KK ++ W+ LH F+ A+ +G++ +AVPKKIL M+VP LTRENVASHLQKYR++LRR+ Sbjct: 221 KKKKIQWTDSLHDLFLQAIRHIGLD---------------------------------------KAVPKKILAFMSVPYLTRENVASHLQKYRIFLRRVA 281
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: ARR13_ARATH (Putative two-component response regulator ARR13 OS=Arabidopsis thaliana GN=ARR13 PE=3 SV=2) HSP 1 Score: 61.2326 bits (147), Expect = 2.273e-8 Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 Query: 466 EAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLC 573 + VPKKIL +MNVP LTRENVASHLQKYRL+++R+ Sbjct: 249 KVVPKKILAIMNVPYLTRENVASHLQKYRLFVKRVV 284
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: GLK1_ARATH (Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=1 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 5.011e-8 Identity = 36/99 (36.36%), Postives = 47/99 (47.47%), Query Frame = 1 Query: 274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRL 570 +K +V W+ ELH++FV AV QLG++ +AVP +ILELM V LTR NVASHLQKYR + + L Sbjct: 152 RKVKVDWTPELHRRFVEAVEQLGVD---------------------------------------KAVPSRILELMGVHCLTRHNVASHLQKYRSHRKHL 211
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: GLK2_ORYSJ (Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica GN=GLK2 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.054e-7 Identity = 35/99 (35.35%), Postives = 47/99 (47.47%), Query Frame = 1 Query: 274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRL 570 +K +V W+ ELH++FV AV QLGI+ +AVP +ILELM + LTR N+ASHLQKYR + + L Sbjct: 214 RKVKVDWTPELHRRFVQAVEQLGID---------------------------------------KAVPSRILELMGIECLTRHNIASHLQKYRSHRKHL 273
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: I1KMU8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 724.546 bits (1869), Expect = 0.000e+0 Identity = 381/603 (63.18%), Postives = 466/603 (77.28%), Query Frame = 1 Query: 1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELP-GNSFPLVSTPGISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNSTVISKAMFSAGDSTGHVNAQNSNQHLNS-LLDNTVRVKSERVAD-TAPANLYPDHFGREDLMSALLKQQDIIAPAENNDFDFDGYSIDNIPV 1770 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKD EQSGS EEGDRQPK S++ADYSSSANEG+W++SK+R+D+E+E ++RDDTSTLKKPRVVWSVELHQQFVAAV+QLGI+ +AVPKKILELMNVPGLTRENVASHLQKYRLYLRRL GVSQH +N+NNSF++PQ+ATFG + DLQ LA GQLPAQSLATLQAAGLGR T K+G+PMPL+DQRN+FSFENP+LRFGE QQQH+S +K NLLHGIPT MEPKQLA LH + QS+G++NM V + ++Q +PLLMQMAQ Q RGQML+++ PRL S +GQP +SNG++ + RNG+ N R P+YNPV +SS+L+FPMN TSE+ NSFPL STPGISS+ K +FQE+V S IKGS GF PSYDIFN+L+ KP +WE+ N + +N+SQH+N LQGN+D T S+LV QGF S GQ+R++ +I KAMFS G+ N QN++Q+LNS LLDN++RVK+ER+ D ++ NL+P+H+G+EDLMSALLKQQ+ + P+E N+FDFDGYS+DNIPV Sbjct: 121 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLSPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRPTGKAGVPMPLMDQRNLFSFENPRLRFGEGQQQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGSLNMRV---NASATQGSPLLMQMAQSQPRGQMLSENIGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPLGSTPGISSITTKGSFQEEVTSGIKGSGGF-PSYDIFNELHHQKPHDWEITNPNLTYNASQHANPLQGNIDVTPSVLVHQGFSSTQQTGQSRDAALIGKAMFSMGEGLEQNNFQNASQNLNSLLLDNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQQEGMGPSE-NEFDFDGYSLDNIPV 679
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: A0A0B2P0V1_GLYSO (Two-component response regulator ARR2 OS=Glycine soja GN=glysoja_009791 PE=4 SV=1) HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0 Identity = 380/603 (63.02%), Postives = 465/603 (77.11%), Query Frame = 1 Query: 1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELP-GNSFPLVSTPGISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNSTVISKAMFSAGDSTGHVNAQNSNQHLNS-LLDNTVRVKSERVAD-TAPANLYPDHFGREDLMSALLKQQDIIAPAENNDFDFDGYSIDNIPV 1770 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKD EQSGS EEGDRQPK S++ADYSSSANEG+W++SK+R+D+E+E ++RDDTSTLKKPRVVWSVELHQQFVAAV+QLGI+ +AVPKKILELMNVPGLTRENVASHLQKYRLYLRRL GVSQH +N+NNSF++PQ+ATFG + DLQ LA GQLPAQSLATLQAAGLGR T K+G+PMPL+DQRN+FSFENP+LRFGE QQQH+S +K NLLHGIPT MEPKQLA LH + QS+G++NM V + ++Q +PLLMQMAQ Q RGQML+++ PRL S +GQP +SNG++ + RNG+ N R P+YNPV +SS+L+FPMN TSE+ NSFPL STPGISS+ K +FQE+V S IKGS GF PSYDIFN+L+ KP +WE+ N + +N+SQH+N LQGN+D T S+LV QGF S GQ+R++ +I KAMFS G+ N QN++Q+LN LLDN++RVK+ER+ D ++ NL+P+H+G+EDLMSALLKQQ+ + P+E N+FDFDGYS+DNIPV Sbjct: 121 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLSPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRPTGKAGVPMPLMDQRNLFSFENPRLRFGEGQQQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGSLNMRV---NASATQGSPLLMQMAQSQPRGQMLSENIGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPLGSTPGISSITTKGSFQEEVTSGIKGSGGF-PSYDIFNELHHQKPHDWEITNPNLTYNASQHANPLQGNIDVTPSVLVHQGFSSTQQTGQSRDAALIGKAMFSMGEGLEQNNFQNASQNLNPLLLDNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQQEGMGPSE-NEFDFDGYSLDNIPV 679
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: D7GN43_POPCA (Putative B-type response regulator 12 OS=Populus canadensis GN=rr12 PE=2 SV=1) HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0 Identity = 389/612 (63.56%), Postives = 459/612 (75.00%), Query Frame = 1 Query: 1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEG-DRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELPGNSFPLVSTPG--ISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNS-TVISKAMFSAGDSTG---HVNAQNSNQHLNSLL-DNTVRVKSERVADTAPAN-LYPDHFGREDLMSALLK---QQDIIAPAENNDFDFDGYSIDNIPV 1770 MKGVTHGACDYLIKP+RIEALKNIWQHVVRKRKNEW+DLEQSGSVEEG DRQ KQ EDADYSSSANEG+WK+SKRRKD+E+E +ERDDTS LKKPRVVWSVELHQQFVAAVNQLGI+ +AVPKKILELMNVPGLTRENVASHLQKYRLYLRR+ GVSQH + + ++F++PQ+AT+GPL DLQ LA GQLPAQSLATLQAAGLGRSTAK +PMP++DQRN+FSFENPKLRFGE QQQH++N KQTNLLHGIPTTMEPKQLA LHH+AQS+G+MNM +H QSS LLMQM+Q Q+RGQ+LN++T PRL S +GQP+ SN +A+ V TRNG+ EN R +NPVSQ+S++LNFP+N T+EL SFPL S + SL K FQE+++SEIKG GFMPSYDIF+DL QH+ +WELQNVGM FN SQ SNS+Q NLD S+L QGF S GQ+RN+ +V+ K MFSAGD+ HVNAQ+ +N+ L +N++RVK+ER D P L+ + FG+EDLMSALLK QQ I AE N+FD DGYS+DNIPV Sbjct: 122 MKGVTHGACDYLIKPIRIEALKNIWQHVVRKRKNEWRDLEQSGSVEEGGDRQQKQPEDADYSSSANEGSWKNSKRRKDEEEETEERDDTSALKKPRVVWSVELHQQFVAAVNQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGVSQHQNGMGSTFISPQEATYGPLSSLNGLDLQTLATAGQLPAQSLATLQAAGLGRSTAKPRMPMPIVDQRNLFSFENPKLRFGEGQQQHLNNGKQTNLLHGIPTTMEPKQLANLHHSAQSLGSMNMQFNAHAGQSSS---LLMQMSQQQSRGQILNETTHSHVPRLSSSIGQPIASNALASGVLTRNGLSENGRGIGFNPVSQSSTLLNFPLNTTAELTATSFPLGSGSAAEVPSLTSKGTFQEEISSEIKGPGGFMPSYDIFSDLQQHRSHDWELQNVGMTFNGSQQSNSVQSNLDVAPSVLSHQGFSSCQSNGQSRNNISVVGKPMFSAGDAGDAMEHVNAQSLEHPINTFLAENSMRVKTERAPDANPQTALFNEQFGQEDLMSALLKQQQQQGGIGLAE-NEFDLDGYSLDNIPV 690
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: I1MRN2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0 Identity = 373/603 (61.86%), Postives = 456/603 (75.62%), Query Frame = 1 Query: 1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELP-GNSFPLVSTPGISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNSTVISKAMFSAGDSTGHVNAQNSNQHLNSLL-DNTVRVKSERVAD-TAPANLYPDHFGREDLMSALLKQQDIIAPAENNDFDFDGYSIDNIPV 1770 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKD EQSGS EEGDR PK S++ADYSSSANEG+W++SK+R+D+E+E ++RDDTSTLKKPRVVWSVELHQQFVAAV+QLGI+ +AVPKKILELMNVPGLTRENVASHLQKYRLYLRRL GVSQH +NLNNSF+ PQ+ATFG + DLQ LA GQLPAQSLATLQAAGLGRSTAK+G+P+PL+DQRN+FSFENP+LRFGE Q QH+S +K NLLHGIPT MEPKQLA LH + QS+G +NM V + ++Q NP+LMQMAQ Q RGQML+++T PRL S +GQP +SNG++ + RNG+ N R P+YNPV +SS+L+FPMN TSE+ NSFP+ +TPGISS+ K +FQE+V S IKGS GF PSYDIFN+L+ K + E+ N G+ +N+S H N LQGN+D S+LV QGF S GQ+R+ +I KAMFS G+ N QN+N N LL DN++R+K+ER+ D ++ NL+P+H+G+EDLM+ALLKQQ+ + PAE N+F+FDGYS+DNIPV Sbjct: 121 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRHPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPIPLMDQRNLFSFENPRLRFGEGQPQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGGLNMRV---NASATQGNPILMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPIGTTPGISSITTKGSFQEEVTSGIKGSSGF-PSYDIFNELHHQKSHDLEITNPGLTYNASHHVNPLQGNIDVAPSVLVHQGFSSTQQTGQSRDGALIGKAMFSMGEGLEQNNLQNAN--FNPLLVDNSIRIKAERIPDASSQTNLFPEHYGQEDLMTALLKQQEGMGPAE-NEFEFDGYSLDNIPV 677
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: A0A0B2P6N3_GLYSO (Two-component response regulator ARR2 OS=Glycine soja GN=glysoja_004349 PE=4 SV=1) HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0 Identity = 373/603 (61.86%), Postives = 456/603 (75.62%), Query Frame = 1 Query: 1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELP-GNSFPLVSTPGISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNSTVISKAMFSAGDSTGHVNAQNSNQHLNSLL-DNTVRVKSERVAD-TAPANLYPDHFGREDLMSALLKQQDIIAPAENNDFDFDGYSIDNIPV 1770 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKD EQSGS EEGDR PK S++ADYSSSANEG+W++SK+R+D+E+E ++RDDTSTLKKPRVVWSVELHQQFVAAV+QLGI+ +AVPKKILELMNVPGLTRENVASHLQKYRLYLRRL GVSQH +NLNNSF+ PQ+ATFG + DLQ LA GQLPAQSLATLQAAGLGRSTAK+G+P+PL+DQRN+FSFENP+LRFGE Q QH+S +K NLLHGIPT MEPKQLA LH + QS+G +NM V + ++Q NP+LMQMAQ Q RGQML+++T PRL S +GQP +SNG++ + RNG+ N R P+YNPV +SS+L+FPMN TSE+ NSFP+ +TPGISS+ K +FQE+V S IKGS GF PSYDIFN+L+ K + E+ N G+ +N+S H N LQGN+D S+LV QGF S GQ+R+ +I KAMFS G+ N QN+N N LL DN++R+K+ER+ D ++ NL+P+H+G+EDLM+ALLKQQ+ + PAE N+F+FDGYS+DNIPV Sbjct: 121 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRHPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPIPLMDQRNLFSFENPRLRFGEGQPQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGGLNMRV---NASATQGNPILMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPIGTTPGISSITTKGSFQEEVTSGIKGSSGF-PSYDIFNELHHQKSHDLEITNPGLTYNASHHVNPLQGNIDVAPSVLVHQGFSSTQQTGQSRDGALIGKAMFSMGEGLEQNNLQNAN--FNPLLVDNSIRIKAERIPDASSQTNLFPEHYGQEDLMTALLKQQEGMGPAE-NEFEFDGYSLDNIPV 677 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 21
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BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094779 ID=g.barbadense_cottongen_reftransV1_0094779; Name=g.barbadense_cottongen_reftransV1_0094779; organism=Gossypium barbadense; type=contig; length=2440bpback to top |