g.barbadense_cottongen_reftransV1_0094779, g.barbadense_cottongen_reftransV1_0094779 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094779
Unique Nameg.barbadense_cottongen_reftransV1_0094779
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2440
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At09chromosomeg.barbadense_cottongen_reftransV1_0094779:28..2440 .
At09:77631613..77634200 -
n/a
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: PCL1_ARATH (Transcription factor LUX OS=Arabidopsis thaliana GN=LUX PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.399e-16
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  268 TLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVS 582
            TLK+PR+VW+ +LH++FV  V  LGI++                                       AVPK I++LMNV GLTRENVASHLQKYRLYL+R+ G++
Sbjct:  141 TLKRPRLVWTPQLHKRFVDVVAHLGIKN---------------------------------------AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLT 206          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: PCLL_ARATH (Transcription factor BOA OS=Arabidopsis thaliana GN=BOA PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.506e-15
Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  268 TLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVS 582
            T K+PR+VW+ +LH++FV  V  LGI++                                       AVPK I++LMNV GLTRENVASHLQKYRLYL+R+ G++
Sbjct:  138 TSKRPRLVWTPQLHKRFVDVVAHLGIKN---------------------------------------AVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRIQGLT 203          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: ARR19_ARATH (Putative two-component response regulator ARR19 OS=Arabidopsis thaliana GN=ARR19 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.041e-13
Identity = 61/207 (29.47%), Postives = 90/207 (43.48%), Query Frame = 1
Query:    1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKR------------KNEWKDLEQSGSVEEGDRQPKQSEDADY--SSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQL-GIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILEL---MNVPGLTRENVASHLQKYRLYLRR 567
            MK   +GACDY++KPV+ E + NIWQH+VRKR            +  W ++ Q     +    P    D D+  S + N GN   +  +K  +            +KPR+ W+ ELHQ+F+ A+  + GIE                                       +A PK ++E    M + G+TR NVASHLQK+R+ L  
Sbjct:  122 MKATFYGACDYVVKPVKEEVMANIWQHIVRKRLIFKPDVAPPKPRMTWSEVFQP---VQSHLVPTDGLDRDHFDSITINGGNGIQNMEKKQGKKP----------RKPRMTWTEELHQKFLEAIEIIGGIE---------------------------------------KANPKVLVECLQEMRIEGITRSNVASHLQKHRINLEE 276          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: APRR4_ARATH (Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.731e-13
Identity = 66/208 (31.73%), Postives = 93/208 (44.71%), Query Frame = 1
Query:    4 KGVTHGACDYLIKPVRIEALKNIWQHVVRKRKN---------EWKDLEQSGSVEEGD---RQPKQSEDAD-YSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQH 588
            K + +GA DYLIKP+R E L+ +++H+V+K +          E    E+S SV  GD   R P +S+ +    +  NE +              ++R   S+ KK RVVW  ELHQ F+ AV+ LG+E                                        AVPKKIL++M V  ++RENVASHLQ   L    +    QH
Sbjct:  131 KWMINGAADYLIKPIRPEDLRIVFKHLVKKMRERRSVVTGEAEKAAGEKSSSV--GDSTIRNPNKSKRSSCLEAEVNEEDRHDH----------NDRACASSAKKRRVVWDEELHQNFLNAVDFLGLE---------------------------------------RAVPKKILDVMKVDYISRENVASHLQVTFLIYNIIVHFQQH 287          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: PCL1_ORYSJ (Transcription factor PCL1 OS=Oryza sativa subsp. japonica GN=PCL1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.555e-13
Identity = 44/121 (36.36%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATF 636
            K+ R+VW+ +LH++FV  V  LG+++                                       AVPK I++LMNV GLTRENVASHLQKYRLY++R+ G       L+N   +P D  F
Sbjct:  117 KRARLVWTPQLHKRFVEVVAHLGMKN---------------------------------------AVPKTIMQLMNVEGLTRENVASHLQKYRLYVKRMQG-------LSNEGPSPSDHIF 191          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: GLK2_ARATH (Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.607e-10
Identity = 38/99 (38.38%), Postives = 49/99 (49.49%), Query Frame = 1
Query:  274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRL 570
            KKP+V W+ ELH++FV AV QLG++                                       +AVP +ILE+MNV  LTR NVASHLQKYR + + L
Sbjct:  146 KKPKVDWTPELHRKFVQAVEQLGVD---------------------------------------KAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHL 205          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: ARR21_ARATH (Putative two-component response regulator ARR21 OS=Arabidopsis thaliana GN=ARR21 PE=2 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 1.246e-9
Identity = 35/100 (35.00%), Postives = 48/100 (48.00%), Query Frame = 1
Query:  274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLC 573
            KK ++ W+  LH  F+ A+  +G++                                       +AVPKKIL  M+VP LTRENVASHLQKYR++LRR+ 
Sbjct:  221 KKKKIQWTDSLHDLFLQAIRHIGLD---------------------------------------KAVPKKILAFMSVPYLTRENVASHLQKYRIFLRRVA 281          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: ARR13_ARATH (Putative two-component response regulator ARR13 OS=Arabidopsis thaliana GN=ARR13 PE=3 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 2.273e-8
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1
Query:  466 EAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLC 573
            + VPKKIL +MNVP LTRENVASHLQKYRL+++R+ 
Sbjct:  249 KVVPKKILAIMNVPYLTRENVASHLQKYRLFVKRVV 284          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: GLK1_ARATH (Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 5.011e-8
Identity = 36/99 (36.36%), Postives = 47/99 (47.47%), Query Frame = 1
Query:  274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRL 570
            +K +V W+ ELH++FV AV QLG++                                       +AVP +ILELM V  LTR NVASHLQKYR + + L
Sbjct:  152 RKVKVDWTPELHRRFVEAVEQLGVD---------------------------------------KAVPSRILELMGVHCLTRHNVASHLQKYRSHRKHL 211          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Match: GLK2_ORYSJ (Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica GN=GLK2 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.054e-7
Identity = 35/99 (35.35%), Postives = 47/99 (47.47%), Query Frame = 1
Query:  274 KKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRL 570
            +K +V W+ ELH++FV AV QLGI+                                       +AVP +ILELM +  LTR N+ASHLQKYR + + L
Sbjct:  214 RKVKVDWTPELHRRFVQAVEQLGID---------------------------------------KAVPSRILELMGIECLTRHNIASHLQKYRSHRKHL 273          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: I1KMU8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 724.546 bits (1869), Expect = 0.000e+0
Identity = 381/603 (63.18%), Postives = 466/603 (77.28%), Query Frame = 1
Query:    1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELP-GNSFPLVSTPGISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNSTVISKAMFSAGDSTGHVNAQNSNQHLNS-LLDNTVRVKSERVAD-TAPANLYPDHFGREDLMSALLKQQDIIAPAENNDFDFDGYSIDNIPV 1770
            MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKD EQSGS EEGDRQPK S++ADYSSSANEG+W++SK+R+D+E+E ++RDDTSTLKKPRVVWSVELHQQFVAAV+QLGI+                                       +AVPKKILELMNVPGLTRENVASHLQKYRLYLRRL GVSQH +N+NNSF++PQ+ATFG +      DLQ LA  GQLPAQSLATLQAAGLGR T K+G+PMPL+DQRN+FSFENP+LRFGE QQQH+S +K  NLLHGIPT MEPKQLA LH + QS+G++NM V    + ++Q +PLLMQMAQ Q RGQML+++     PRL S +GQP +SNG++  +  RNG+  N R P+YNPV  +SS+L+FPMN TSE+   NSFPL STPGISS+  K +FQE+V S IKGS GF PSYDIFN+L+  KP +WE+ N  + +N+SQH+N LQGN+D T S+LV QGF S    GQ+R++ +I KAMFS G+     N QN++Q+LNS LLDN++RVK+ER+ D ++  NL+P+H+G+EDLMSALLKQQ+ + P+E N+FDFDGYS+DNIPV
Sbjct:  121 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLSPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRPTGKAGVPMPLMDQRNLFSFENPRLRFGEGQQQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGSLNMRV---NASATQGSPLLMQMAQSQPRGQMLSENIGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPLGSTPGISSITTKGSFQEEVTSGIKGSGGF-PSYDIFNELHHQKPHDWEITNPNLTYNASQHANPLQGNIDVTPSVLVHQGFSSTQQTGQSRDAALIGKAMFSMGEGLEQNNFQNASQNLNSLLLDNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQQEGMGPSE-NEFDFDGYSLDNIPV 679          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: A0A0B2P0V1_GLYSO (Two-component response regulator ARR2 OS=Glycine soja GN=glysoja_009791 PE=4 SV=1)

HSP 1 Score: 722.235 bits (1863), Expect = 0.000e+0
Identity = 380/603 (63.02%), Postives = 465/603 (77.11%), Query Frame = 1
Query:    1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELP-GNSFPLVSTPGISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNSTVISKAMFSAGDSTGHVNAQNSNQHLNS-LLDNTVRVKSERVAD-TAPANLYPDHFGREDLMSALLKQQDIIAPAENNDFDFDGYSIDNIPV 1770
            MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKD EQSGS EEGDRQPK S++ADYSSSANEG+W++SK+R+D+E+E ++RDDTSTLKKPRVVWSVELHQQFVAAV+QLGI+                                       +AVPKKILELMNVPGLTRENVASHLQKYRLYLRRL GVSQH +N+NNSF++PQ+ATFG +      DLQ LA  GQLPAQSLATLQAAGLGR T K+G+PMPL+DQRN+FSFENP+LRFGE QQQH+S +K  NLLHGIPT MEPKQLA LH + QS+G++NM V    + ++Q +PLLMQMAQ Q RGQML+++     PRL S +GQP +SNG++  +  RNG+  N R P+YNPV  +SS+L+FPMN TSE+   NSFPL STPGISS+  K +FQE+V S IKGS GF PSYDIFN+L+  KP +WE+ N  + +N+SQH+N LQGN+D T S+LV QGF S    GQ+R++ +I KAMFS G+     N QN++Q+LN  LLDN++RVK+ER+ D ++  NL+P+H+G+EDLMSALLKQQ+ + P+E N+FDFDGYS+DNIPV
Sbjct:  121 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLSPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRPTGKAGVPMPLMDQRNLFSFENPRLRFGEGQQQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGSLNMRV---NASATQGSPLLMQMAQSQPRGQMLSENIGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPLGSTPGISSITTKGSFQEEVTSGIKGSGGF-PSYDIFNELHHQKPHDWEITNPNLTYNASQHANPLQGNIDVTPSVLVHQGFSSTQQTGQSRDAALIGKAMFSMGEGLEQNNFQNASQNLNPLLLDNSIRVKAERIPDASSQTNLFPEHYGQEDLMSALLKQQEGMGPSE-NEFDFDGYSLDNIPV 679          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: D7GN43_POPCA (Putative B-type response regulator 12 OS=Populus canadensis GN=rr12 PE=2 SV=1)

HSP 1 Score: 704.131 bits (1816), Expect = 0.000e+0
Identity = 389/612 (63.56%), Postives = 459/612 (75.00%), Query Frame = 1
Query:    1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEG-DRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELPGNSFPLVSTPG--ISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNS-TVISKAMFSAGDSTG---HVNAQNSNQHLNSLL-DNTVRVKSERVADTAPAN-LYPDHFGREDLMSALLK---QQDIIAPAENNDFDFDGYSIDNIPV 1770
            MKGVTHGACDYLIKP+RIEALKNIWQHVVRKRKNEW+DLEQSGSVEEG DRQ KQ EDADYSSSANEG+WK+SKRRKD+E+E +ERDDTS LKKPRVVWSVELHQQFVAAVNQLGI+                                       +AVPKKILELMNVPGLTRENVASHLQKYRLYLRR+ GVSQH + + ++F++PQ+AT+GPL      DLQ LA  GQLPAQSLATLQAAGLGRSTAK  +PMP++DQRN+FSFENPKLRFGE QQQH++N KQTNLLHGIPTTMEPKQLA LHH+AQS+G+MNM   +H  QSS    LLMQM+Q Q+RGQ+LN++T    PRL S +GQP+ SN +A+ V TRNG+ EN R   +NPVSQ+S++LNFP+N T+EL   SFPL S     + SL  K  FQE+++SEIKG  GFMPSYDIF+DL QH+  +WELQNVGM FN SQ SNS+Q NLD   S+L  QGF S    GQ+RN+ +V+ K MFSAGD+     HVNAQ+    +N+ L +N++RVK+ER  D  P   L+ + FG+EDLMSALLK   QQ  I  AE N+FD DGYS+DNIPV
Sbjct:  122 MKGVTHGACDYLIKPIRIEALKNIWQHVVRKRKNEWRDLEQSGSVEEGGDRQQKQPEDADYSSSANEGSWKNSKRRKDEEEETEERDDTSALKKPRVVWSVELHQQFVAAVNQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRVSGVSQHQNGMGSTFISPQEATYGPLSSLNGLDLQTLATAGQLPAQSLATLQAAGLGRSTAKPRMPMPIVDQRNLFSFENPKLRFGEGQQQHLNNGKQTNLLHGIPTTMEPKQLANLHHSAQSLGSMNMQFNAHAGQSSS---LLMQMSQQQSRGQILNETTHSHVPRLSSSIGQPIASNALASGVLTRNGLSENGRGIGFNPVSQSSTLLNFPLNTTAELTATSFPLGSGSAAEVPSLTSKGTFQEEISSEIKGPGGFMPSYDIFSDLQQHRSHDWELQNVGMTFNGSQQSNSVQSNLDVAPSVLSHQGFSSCQSNGQSRNNISVVGKPMFSAGDAGDAMEHVNAQSLEHPINTFLAENSMRVKTERAPDANPQTALFNEQFGQEDLMSALLKQQQQQGGIGLAE-NEFDLDGYSLDNIPV 690          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: I1MRN2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0
Identity = 373/603 (61.86%), Postives = 456/603 (75.62%), Query Frame = 1
Query:    1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELP-GNSFPLVSTPGISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNSTVISKAMFSAGDSTGHVNAQNSNQHLNSLL-DNTVRVKSERVAD-TAPANLYPDHFGREDLMSALLKQQDIIAPAENNDFDFDGYSIDNIPV 1770
            MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKD EQSGS EEGDR PK S++ADYSSSANEG+W++SK+R+D+E+E ++RDDTSTLKKPRVVWSVELHQQFVAAV+QLGI+                                       +AVPKKILELMNVPGLTRENVASHLQKYRLYLRRL GVSQH +NLNNSF+ PQ+ATFG +      DLQ LA  GQLPAQSLATLQAAGLGRSTAK+G+P+PL+DQRN+FSFENP+LRFGE Q QH+S +K  NLLHGIPT MEPKQLA LH + QS+G +NM V    + ++Q NP+LMQMAQ Q RGQML+++T    PRL S +GQP +SNG++  +  RNG+  N R P+YNPV  +SS+L+FPMN TSE+   NSFP+ +TPGISS+  K +FQE+V S IKGS GF PSYDIFN+L+  K  + E+ N G+ +N+S H N LQGN+D   S+LV QGF S    GQ+R+  +I KAMFS G+     N QN+N   N LL DN++R+K+ER+ D ++  NL+P+H+G+EDLM+ALLKQQ+ + PAE N+F+FDGYS+DNIPV
Sbjct:  121 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRHPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPIPLMDQRNLFSFENPRLRFGEGQPQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGGLNMRV---NASATQGNPILMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPIGTTPGISSITTKGSFQEEVTSGIKGSSGF-PSYDIFNELHHQKSHDLEITNPGLTYNASHHVNPLQGNIDVAPSVLVHQGFSSTQQTGQSRDGALIGKAMFSMGEGLEQNNLQNAN--FNPLLVDNSIRIKAERIPDASSQTNLFPEHYGQEDLMTALLKQQEGMGPAE-NEFEFDGYSLDNIPV 677          
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Match: A0A0B2P6N3_GLYSO (Two-component response regulator ARR2 OS=Glycine soja GN=glysoja_004349 PE=4 SV=1)

HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0
Identity = 373/603 (61.86%), Postives = 456/603 (75.62%), Query Frame = 1
Query:    1 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKQSEDADYSSSANEGNWKSSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVAAVNQLGIESTSLYSIFFYNLLNVTXXXXXXXXXXXXXXXXXXXXXNTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLCGVSQHPSNLNNSFMNPQDATFGPL------DLQALAATGQLPAQSLATLQAAGLGRSTAKSGIPMPLIDQRNIFSFENPKLRFGEAQQQHVSNNKQTNLLHGIPTTMEPKQLAGLHHTAQSMGNMNMPVLSHGSQSSQNNPLLMQMAQPQARGQMLNDSTVGLAPRLLSPMGQPMLSNGMATNVSTRNGVPENIRAPSYNPVSQTSSMLNFPMNHTSELP-GNSFPLVSTPGISSLAPKVAFQEDVNSEIKGSVGFMPSYDIFNDLNQHKPQNWELQNVGMMFNSSQHSNSLQGNLDHTQSILVQQGFLS----GQNRNSTVISKAMFSAGDSTGHVNAQNSNQHLNSLL-DNTVRVKSERVAD-TAPANLYPDHFGREDLMSALLKQQDIIAPAENNDFDFDGYSIDNIPV 1770
            MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKD EQSGS EEGDR PK S++ADYSSSANEG+W++SK+R+D+E+E ++RDDTSTLKKPRVVWSVELHQQFVAAV+QLGI+                                       +AVPKKILELMNVPGLTRENVASHLQKYRLYLRRL GVSQH +NLNNSF+ PQ+ATFG +      DLQ LA  GQLPAQSLATLQAAGLGRSTAK+G+P+PL+DQRN+FSFENP+LRFGE Q QH+S +K  NLLHGIPT MEPKQLA LH + QS+G +NM V    + ++Q NP+LMQMAQ Q RGQML+++T    PRL S +GQP +SNG++  +  RNG+  N R P+YNPV  +SS+L+FPMN TSE+   NSFP+ +TPGISS+  K +FQE+V S IKGS GF PSYDIFN+L+  K  + E+ N G+ +N+S H N LQGN+D   S+LV QGF S    GQ+R+  +I KAMFS G+     N QN+N   N LL DN++R+K+ER+ D ++  NL+P+H+G+EDLM+ALLKQQ+ + PAE N+F+FDGYS+DNIPV
Sbjct:  121 MKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRHPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGID---------------------------------------KAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPIPLMDQRNLFSFENPRLRFGEGQPQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGGLNMRV---NASATQGNPILMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPIGTTPGISSITTKGSFQEEVTSGIKGSSGF-PSYDIFNELHHQKSHDLEITNPGLTYNASHHVNPLQGNIDVAPSVLVHQGFSSTQQTGQSRDGALIGKAMFSMGEGLEQNNLQNAN--FNPLLVDNSIRIKAERIPDASSQTNLFPEHYGQEDLMTALLKQQEGMGPAE-NEFEFDGYSLDNIPV 677          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 21
Match NameE-valueIdentityDescription
PCL1_ARATH7.399e-1641.90Transcription factor LUX OS=Arabidopsis thaliana G... [more]
PCLL_ARATH7.506e-1540.95Transcription factor BOA OS=Arabidopsis thaliana G... [more]
ARR19_ARATH2.041e-1329.47Putative two-component response regulator ARR19 OS... [more]
APRR4_ARATH2.731e-1331.73Putative two-component response regulator-like APR... [more]
PCL1_ORYSJ6.555e-1336.36Transcription factor PCL1 OS=Oryza sativa subsp. j... [more]
GLK2_ARATH4.607e-1038.38Transcription activator GLK2 OS=Arabidopsis thalia... [more]
ARR21_ARATH1.246e-935.00Putative two-component response regulator ARR21 OS... [more]
ARR13_ARATH2.273e-872.22Putative two-component response regulator ARR13 OS... [more]
GLK1_ARATH5.011e-836.36Transcription activator GLK1 OS=Arabidopsis thalia... [more]
GLK2_ORYSJ1.054e-735.35Probable transcription factor GLK2 OS=Oryza sativa... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0094779 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1KMU8_SOYBN0.000e+063.18Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2P0V1_GLYSO0.000e+063.02Two-component response regulator ARR2 OS=Glycine s... [more]
D7GN43_POPCA0.000e+063.56Putative B-type response regulator 12 OS=Populus c... [more]
I1MRN2_SOYBN0.000e+061.86Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2P6N3_GLYSO0.000e+061.86Two-component response regulator ARR2 OS=Glycine s... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 2..23
e-value: 1.5E-7
score: 29.6
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 1..27
e-value: 4.9E-11
score: 42.1
IPR009057Homeodomain-likeSUPERFAMILY46689Homeodomain-likecoord: 1..27
NoneNo IPR availablePANTHERPTHR26402RESPONSE REGULATOR OF TWO-COMPONENT SYSTEMcoord: 1..143
NoneNo IPR availablePANTHERPTHR26402:SF617TWO-COMPONENT RESPONSE REGULATOR ARR1-RELATEDcoord: 1..143

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094779 ID=g.barbadense_cottongen_reftransV1_0094779; Name=g.barbadense_cottongen_reftransV1_0094779; organism=Gossypium barbadense; type=contig; length=2440bp
ATGAAGGGCGTTACCCACGGTGCTTGCGATTACCTAATCAAACCAGTTCG
AATTGAGGCACTGAAGAACATATGGCAACATGTGGTTCGGAAGAGGAAGA
ATGAGTGGAAAGACTTGGAGCAGTCGGGAAGTGTAGAAGAAGGAGATCGG
CAGCCAAAACAATCTGAAGATGCAGATTACTCATCCTCAGCTAATGAAGG
GAATTGGAAAAGCTCAAAACGGAGGAAGGACGATGAAGATGAAAATGATG
AGAGGGATGATACATCAACGCTAAAGAAGCCGAGGGTTGTTTGGTCTGTT
GAACTCCATCAACAGTTTGTTGCAGCAGTTAATCAACTAGGCATCGAAAG
TACGAGTCTTTACTCCATTTTCTTTTACAATTTACTGAATGTTACATCTT
CAATAATCGATTGACTATTGTTGTCTTCCCTTTCGTATGATTTTTCTGGT
TGATCTTCTAATACAGAGGCTGTCCCGAAGAAAATTTTGGAGTTGATGAA
CGTTCCCGGACTTACTAGAGAAAATGTTGCCAGCCACCTTCAGAAATATC
GCTTGTATCTTAGAAGGTTGTGTGGGGTATCGCAACACCCGAGTAATCTG
AATAATTCTTTTATGAATCCCCAAGATGCAACTTTTGGGCCACTTGATCT
TCAAGCTCTTGCTGCCACTGGTCAACTTCCCGCACAAAGTCTTGCCACAC
TCCAAGCAGCAGGGCTTGGTCGGTCAACTGCTAAATCAGGCATACCTATG
CCCCTCATTGATCAAAGAAACATTTTTAGCTTCGAAAACCCAAAGTTAAG
ATTTGGAGAAGCGCAGCAACAACATGTGAGCAATAATAAGCAAACGAATT
TACTTCATGGAATTCCAACAACTATGGAGCCAAAACAGCTTGCCGGCTTG
CACCACACGGCGCAATCAATGGGAAACATGAATATGCCAGTCCTTTCCCA
CGGTTCACAAAGTAGCCAAAATAATCCGTTATTGATGCAGATGGCTCAGC
CACAGGCTAGAGGACAAATGCTCAATGATTCCACTGTCGGTCTTGCTCCG
AGACTTCTTTCACCAATGGGGCAGCCCATGTTATCCAATGGAATGGCTAC
AAATGTCTCTACAAGAAATGGGGTTCCGGAAAATATCCGAGCCCCTAGTT
ATAATCCAGTTTCTCAGACCTCTTCAATGTTGAACTTCCCCATGAATCAC
ACTTCAGAACTACCTGGTAACAGTTTCCCTCTTGTAAGTACTCCGGGGAT
TTCTAGTCTAGCACCCAAAGTGGCTTTTCAGGAAGACGTTAACTCAGAAA
TCAAAGGATCAGTGGGTTTTATGCCAAGTTACGATATATTTAATGACTTG
AATCAGCATAAACCCCAAAACTGGGAACTACAGAACGTAGGCATGATGTT
CAATTCCTCTCAGCATTCGAACTCTCTTCAAGGTAACCTTGATCACACAC
AATCGATTTTAGTTCAACAAGGATTCTTGTCCGGACAGAACAGGAATTCA
ACCGTCATAAGTAAGGCAATGTTCTCAGCCGGAGATAGTACTGGCCATGT
GAACGCTCAAAACAGTAATCAACATCTCAACTCCCTTCTTGACAATACAG
TAAGGGTCAAATCCGAGAGAGTTGCTGATACGGCCCCTGCCAATCTATAC
CCTGATCACTTCGGACGAGAGGATCTCATGAGTGCTCTTTTGAAACAGCA
AGACATCATCGCACCGGCTGAAAACAACGATTTCGATTTCGATGGATATT
CCATCGATAATATTCCAGTTTAACAGGACCGGCTAAACAGGTATCTGTTA
CCATTTGGACCGACAATTACAATGCTTGTAAGATATTTCTGCATGATAAT
GCAAAGGCGATCGTGCAAATTTTTGATTGTTTTTTCGGTAACGAAATCGG
GCAGGCCAAAAAACACTAATTTTTAGGGTCTTTTTTCAAGTTGGTGAAGC
ATATTGTTTTTCTAGTCATCAGCAAGATCATAGGAGACTTATTTTCTAAC
TCTAAATAACAGATGAAATTTGATCTTCTATTTTGGTTTTGTTTTTATTG
TTATTCTGTTTTTGTGGAGGAATTGACTGTTATGTATATACACCATTTGA
TTGCTCTACATATAAGCCTGTCTGGGTATTCATTTATAGCTATTTTATTT
ATCAAATTTATCATGAGATCCTCCTATATGTGTTAGGTCTAATTATGATT
TTAGTCCCCATATTATGTTGAAATTTGGAATTTTATCTCTTTATAATTTG
TTTTTTATTAATAAGTTGAAATTGTAGTTGTAAAAATGATAGCGGGTTAG
ATATCTGTATTTAACAGTGCTTCACGCTTGGATGGACCACTTGAATATTT
GAATGTGATTTATTTTTATGGATAATAGGTTCGATATTCATTTAGAAATT
TTAATTCTTTTCGGTCCCTGGAAATTAGGTCTACTTTGGT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006447Myb_dom_plants
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding