g.barbadense_cottongen_reftransV1_0094771, g.barbadense_cottongen_reftransV1_0094771 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094771
Unique Nameg.barbadense_cottongen_reftransV1_0094771
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2284
Homology
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.939e-11
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = -2 
Query: 1114 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 1341
            ++VGNIP+D  + +L ++  E G VVS R+V DRE+G+ +G+GF     E     A  NL G  ++GR +RV+ AE
Sbjct:  193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.575e-10
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = -2 
Query: 1075 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQVY 1341
            ++VGNIP+   + +L ++  E G VVS R+V DRETG+ +G+GF     E     A  NL G  ++GR +RV+ AE     DR+R   +
Sbjct:  232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE-----DRSRRNTF 315
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: C3H25_ORYSJ (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.642e-10
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = -2 
Query: 1120 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDF 1341
            VFVG IPYD TE  L+ +  + G VV   LV D+ TGK KG+ F  Y+D+ + + A  NL G ++ GR +RVD 
Sbjct:   38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDH 111
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: RBG1_ARATH (Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana GN=RBG1 PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 4.475e-10
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = -2 
Query: 1132 ASSQHRCVFVGNIPYDATEEQLIEIC-REVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQL 1362
            A +++RC FVG + + AT+EQ IE C  E G V   +++IDRETG+ KG+ F  +KDE++  +A   + G E++GR +
Sbjct:    4 ADNEYRC-FVGGLAW-ATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNI 79
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.774e-10
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = -2 
Query: 1114 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 1341
            V+VGN+P+D    +L ++  E G VVS R+V DRETG+ +G+GF     E     A   L G  ++GR +RV+ AE
Sbjct:  151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

HSP 2 Score: 56.6102 bits (135), Expect = 1.434e-7
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = -2 
Query: 1117 FMASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFA 1368
            F    +   +FVGN+PYD   E+L  I    G V    ++ +RET + +G+GF      E A  A   L GY+++GRQL V+ A
Sbjct:   48 FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKA 131
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.629e-10
Identity = 28/85 (32.94%), Postives = 52/85 (61.18%), Query Frame = -2 
Query: 1111 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 1365
            MA  ++RC FVG + +   +E L +   + G +   +++ DRETG+ +G+GF  +KDE++   A   + G E++GR + V+ A++
Sbjct:    1 MAEVEYRC-FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQS 84
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 7.429e-10
Identity = 28/86 (32.56%), Postives = 50/86 (58.14%), Query Frame = -2 
Query: 1114 LFMASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 1371
            +  A  ++RC FVG + +    E L +     G V+  +++ DRETG+ +G+GF  +  E++ L A  N+ G E++GR + V+ A+
Sbjct:    1 MAAADVEYRC-FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.585e-10
Identity = 33/87 (37.93%), Postives = 56/87 (64.37%), Query Frame = -2 
Query: 1105 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDK 1365
            M+SS+   +F+G + Y   E+ L E   + G VV  R+++DRETG+ +G+GF  +   E A SA + L G +++GR ++V++A ND+
Sbjct:   37 MSSSK---LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA-NDR 119
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.139e-9
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = -2 
Query: 1099 VFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGS 1341
            +F+G + +   +  L +     G VV  ++++DRETG+ +G+GF  + DE  A +A   + G E+NGR +RV+ A ND+ S
Sbjct:   37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA-NDRPS 116
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: RBPB_NOSS1 (Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpB PE=3 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 1.140e-9
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = -2 
Query: 1114 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAE 1344
             ++VGN+ YD TEE L  +  E G V   +L +DRETG+ +G+GF E   +    +A   L G E  GR L+V+ A+
Sbjct:    2 SIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAK 78
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2TVM8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.755e-56
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2TS08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.470e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2UUA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.699e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2QNG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.723e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A061FSB3_THECC (Cleavage stimulation factor 64 kDa subunit, putative OS=Theobroma cacao GN=TCM_036589 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.897e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0B0NCV1_GOSAR (Cleavage stimulation factor subunit 2 OS=Gossypium arboreum GN=F383_15609 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.560e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2R774_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.588e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2V9M9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.793e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2UBF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.472e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2SS01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.904e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
ROC3_NICSY9.939e-1142.1128 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY1.575e-1039.3331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
C3H25_ORYSJ1.642e-1045.95Zinc finger CCCH domain-containing protein 25 OS=O... [more]
RBG1_ARATH4.475e-1042.31Probable glycine-rich RNA-binding protein 1 OS=Ara... [more]
ROC1_SPIOL5.774e-1042.1128 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
GRP1_DAUCA6.629e-1032.94Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SORBI7.429e-1032.56Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
RBG3_ARATH7.585e-1037.93Glycine-rich RNA-binding protein 3, mitochondrial ... [more]
RBG2_ARATH1.139e-935.80Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
RBPB_NOSS11.140e-940.26Putative RNA-binding protein RbpB OS=Nostoc sp. (s... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TVM8_GOSRA8.755e-56100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TS08_GOSRA1.470e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UUA6_GOSRA1.699e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QNG4_GOSRA1.723e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FSB3_THECC1.897e-55100.00Cleavage stimulation factor 64 kDa subunit, putati... [more]
A0A0B0NCV1_GOSAR2.560e-55100.00Cleavage stimulation factor subunit 2 OS=Gossypium... [more]
A0A0D2R774_GOSRA2.588e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2V9M9_GOSRA2.793e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UBF0_GOSRA3.472e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SS01_GOSRA5.904e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..83
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..59
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..145
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.535
NoneNo IPR availableTMHMMTMhelixcoord: 89..111
NoneNo IPR availableTMHMMTMhelixcoord: 126..143
NoneNo IPR availableTMHMMTMhelixcoord: 60..82

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094771 ID=g.barbadense_cottongen_reftransV1_0094771; Name=g.barbadense_cottongen_reftransV1_0094771; organism=Gossypium barbadense; type=contig; length=2284bp
GTGGACTGCTTGGCCTCCTAGTTGTTTTTGAGGGTCAAAGTTTGTTGCCA
GTCCAGGTCCACCACGGCCCTGCAATAAAACAAAATTCACTGTTTAAGCT
TATAAATAAAATCTAATTTTGAAAAACCAAAATATCAAACCAAACAGAAG
GAAGAAAACCATTATATTGAAGAAATATAATCCAAAGCAGTAGGATAGTG
CATGTACATGGGCTTTTGTTGCATTGGAATAAACCTCAGTTACCACCAAG
GTTATAGACCAGAGAGTTAGATTGTCAGTATGAAGCATGATAGTAGATCT
ATCATCCAATAGAATGGTTCAAGCCAAATAGCAAACTTTAAAAGTCCCTG
AAATATTTAGCAAACATATCCTTGCAAGCACATCACAACTATGCGTTTAC
ATAAGCATAAATAACTTTATCACAATTTGTATTTTCCTATAATTTCTGCG
ATGACAGTCTAATATAGAAGGCTGAAGGCTTGTCCTAGATTTAATGATTA
ATCTCTCTTTCTTTCAGAAGGGATGTGAATGTGGAGGCATTAGTCCATGA
TATCAAGTTCATTGCAGCTTTTTTGTCCTTTCTATCACTTTTTTTAAGAA
CTAGAATATATTACCTGATAAAATAATAAACATACAGGAATTCAAAAATT
AAAAACCTTATAAGCGTAACCTGAAGCACCAAGTAATACATACACAAGAG
CAAACATCTTTTTATATCATCCAACAGATCAAAGTAAATTTCATGCATGA
GAGCCTAGGCATTAGCATAAAAATTACATAGACCATCCATTAGCACCAAT
TCAGATGTATAGATATCACATAGGAAACATACTCTGCCAAGGTAACTGAA
ATTACACTTTAAAATACAGATATAAACAGTTTGGAATGGAGGGAAATTGG
GTATTTGTGGGCTTAAATTAAATTAATCAATACTAAATAGCCACCTACAC
TGCCTTTGTCATCAAAACCAGTGTTCATATAATCACATCTAACCAATGTC
ACTGTGAGAAGAGAAACTATGACGGTGCTAAATTATCACCCTGATGAAAA
AAATAAAAGATGCAGAAAAAAAGAGTACACCTGTTCTCGGTTTCGATCAG
AGCCTTTGTCATTTTCAGCAAAATCAACTCGCAACTGCCGGCCATTGATC
TCATAACCTTGAAGATTCCTTCGTGCACTTAGAGCTGTCTCCTCATCCTT
GTATTCACAGAACCCATAACCTTTTGGTTTACCAGTTTCTCTATCAATAA
CCAATCTGAAAGAAACAACCGGGCCAACCTCCCTGCAGATTTCTATAAGC
TGTTCTTCAGTAGCATCATATGGTATATTCCCCACAAAAACGCAGCGATG
TTGAGATGAGGCCATGAAAAGGGGGGCGAAAATCAATAGGAGGAGAAGGT
GAAGCAAAGCTGAAGCTTCATCTTCTTACTCCGCATCGCTTTTTTCTTCT
GCTTATTTCAGTCCAATTATATGAAGAGATAAAAAAGAACAGGTACAAGT
GTATTTCGAATTCGATGGTTCCAGCGGTCAATTGGGTTTTCTGCAAGGAT
TTATTATTTTCTCAGTGCAAGGAAAGAAACGAAGATTTTCTGTTGTTTTT
ACTCTTTTTTTTCTTTGAACTTTCTTCTGTGTTCTTTTGTCCTTTTCATC
TTTACTATTTTAATTCTTATAGAATAATAAATATTCCCTTCATCTCTCTC
CATTTGCTTCTCACCTTTGCTTCTCTCTTTTTTCAACCAACCATGGCCTC
TTCTTCAATCCAAGAAGGTAACACTATTGACTCTTCCTTGACTCATCCGT
ATGTTTTCACTATTTTCTTTTTCATTCTTTTTTGTTGCAAAGTTTGAAAC
GGATCCTTTAGCTTAATGATTCACTTTTGATTTATGGGTATTCATTCTTT
CTTCAAAATATTTAATGGGTTCTTTTTAAAATAGGAAAACAGCTTAGTTC
AGTTGACTTACTGTTTTTTTAATTGAATTTTAGCTGAACTTTAGCTTAGT
ATATATCGAGATCCCTTGGAGCTTAGTTTTTTAGAAATAATTTGGGAAGT
TGGGTTCTTTGATTTTGAATTATGTGGTGGTTTTAGTTAGAAATCAAGAA
TAAAGATGAAGAAATTGGAAGGAGGCATCGTTTTTGGTAATTGATTCTTT
GATAGGAGCTGAAAATTCGAATTTCTAATTTTTGGTGGTGGGGTTAAGGA
TTATGACAAAAGTATGGTTTGTTTAGTAATCATATTGATTAGTGATTGAT
TGTTGATTGTTAAGGTGGAGATATGGATCTGGAG
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