g.barbadense_cottongen_reftransV1_0094672, g.barbadense_cottongen_reftransV1_0094672 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: A0A0A0LUR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G015600 PE=4 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 8.234e-54 Identity = 134/311 (43.09%), Postives = 175/311 (56.27%), Query Frame = -1 Query: 892 MLALSV-NSKRQRRPNVRLGEIGYVSAAFACGFSQKTKENLVHKTWKPDSLYSQHNELDTVI-----------EFSSKGISPDFFISADSQHNTENKN-PNSSK-PGFDSVGADEIHMMKSGLIFGTVTRKSRVMKWRGRSREGNNCLFGSAWTRSSKLSPRFTGEDRKEHGEKELTGIGSNAFAGYCPDNVFQDILDHETSANSKDACEYNVDEPGYDSWK---DAFYEGNNVFLKSDDAWDQTIYTHNDTTSVRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLR 1773 ML ++V +SKRQRRPNVRLGEIG +SAA+ACGFS T+E L HK WK + + NE + ++ S G+SP IS + Q + ENKN PNSS P + + I + K L F VTRK R K RGRS+ + +W SSK S D EKE G G++A N F D DH+T SK+ C +D+P + A + KS + + + T V WLE +GFG+YAG+FEMHEVDEE+LPLLT +DLKE+G+F+VG RRKLYNAI++LR Sbjct: 1 MLVMNVMSSKRQRRPNVRLGEIGDISAAWACGFSHSTREKLAHKEWKHELDQTVENEDNPIVFGELEPSSPKLTVSELGVSPQ--ISTELQLHEENKNNPNSSDLPLECPISTELIDVTKPRLKFSDVTRKCRDKKRRGRSKNVGYAILPGSW--SSKHS-----SDGYSMDEKECEGTGNSA-------NGFGDSSDHQTPTTSKEEC--GIDQPTRQERELNNAARFTSEKARHKSGNMLVKMRLEDDGTNVVSRWLEGVGFGKYAGVFEMHEVDEEALPLLTIEDLKEIGVFSVGTRRKLYNAIRQLR 293
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: A0A068TT62_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_2 OS=Coffea canephora GN=GSCOC_T00022678001 PE=4 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 1.170e-53 Identity = 130/309 (42.07%), Postives = 174/309 (56.31%), Query Frame = -1 Query: 889 MLALSVNSKRQRRPNVRLGEIGYVSAAFACGFSQKTKENLVHKTWK---PDSLYSQHNELDTVIEFSSKGISPDFF--ISADSQHNTENKNPNSSKPGFDSVGADEIHMMKSGLIFGTVTRKSRVMKWRGRSREGNNCLFGSAWTRSSKLSPRFTGEDRKEHGEKELTGIGSNAFAGYCPDNVFQDILDHETSANSKDACEYNVDE---------PGYDSWKDAFYEGNNVFLKSDDAWDQTIYTHNDTTSVRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLRG 1773 M+ SVNSKR RRPNVRL EIG + AAFA ++ +L K WK D S++ + T + + P I D QHN ENK+PNS K + V +DE +M L FGT+TR+SR+MK R R+ LFG+ W +SK + T +D K +G + S A P N F+D +ETSA SK+A E +D+ P S + A YE N FL+ + + D V WLE+LG G++A +FEMHEVDEE+LP LT +DLK+MGI +VG RRKL+NAIQ+L+G Sbjct: 1 MVIFSVNSKRIRRPNVRLWEIGDLPAAFARASYHRSGASLGQKRWKRKFSDVGESEYLQFSTEKQPEHTILDPSVSPRIINDIQHNRENKDPNSLKVASEFVNSDERNMTNCNLDFGTITRRSRLMKRRKRNPNSTCSLFGNPW--NSKTGRQKTVQDEKGYGWNQNVACTSAADLDIFPVNGFKDSSQNETSAMSKEAWENEIDDLNSRGPLQKPRGFSIEGACYEENATFLQFARGHNDKESSGCDVNGVSLWLEELGLGKFAELFEMHEVDEETLPFLTFEDLKDMGIVSVGPRRKLFNAIQQLKG 307
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: A0A059A5C9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02629 PE=4 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.546e-38 Identity = 121/310 (39.03%), Postives = 153/310 (49.35%), Query Frame = -1 Query: 889 MLALSVNSKRQRRPNVRLGEIGYVSAAFACGFSQKTKEN---------------LVHKTWKPDSLYSQHNELDTVIEFSSKGISPDFFISADSQHNTENKNPNSSKPGFDSVGADEIHMMKSGLIFGTVTRKSRVMKWRGRSREGNNCLFGSAWTRSSKLSPRFTGEDRKEHGEKELTGIGSNAFAGYCPDNVFQDILDHETSANSKDACEYNVDEPGYDSWKDAFYEGNNVFLKSDDAWDQTIYTHNDTTSVRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLRG 1773 ML L ++SKR+RRPNVRLGE+G AAFAC FS + + N V K P+SL LD + S GIS D + EN+NP S ++ + E+ M K L FG VTRK RVMK R RS G+N +F S W + ++ E E K G N+ PD F D+ ETS SK+ E +GN S +A + +D E LG G+YA +FEMHEVDEE LPLLT DLKEMG+ AVG RRKLY+AI++L G Sbjct: 1 MLILRMDSKRERRPNVRLGEVGDFPAAFACVFSHRYEANSIRKRRNRVVDPGKRSVSKEAPPESLG-----LDRAV---SPGISVDPLL-----QRGENENPAS-----EAESSGEMGMAKFELNFGAVTRKCRVMKRRCRSAAGSNRVFASGWGFT------YSPEIADESDGKVSVGFAENS----APDQ-FDDLSGRETSMASKEGTE----------------DGN----VSPNAGHGHGHGEDDA-------EVLGLGKYADMFEMHEVDEEVLPLLTLQDLKEMGVHAVGPRRKLYSAIKQLAG 254
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: W9S528_9ROSA (Protein bicaudal C-1-B-like protein OS=Morus notabilis GN=L484_016667 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.116e-24 Identity = 70/132 (53.03%), Postives = 82/132 (62.12%), Query Frame = -1 Query: 1411 MLALSVNSKRQRRPNVRLGEIGYVSAAFACGFSQ--KTKENLVHKTWKPD---------SLYSQHNELDTVIEFSSKGISPDFFISADSQHNTENKNPNSSKPGFDSVGADEIHMMKSGLIFGTVTRKSRVM 1773 ML LS+N+KRQRRPNVRLGEIG SAAFACGFSQ TKE L HK WK D +L +E D+ + S G+SP SADSQ N ENKNPNS + + + D M+KS L FG +TRK R M Sbjct: 1 MLILSMNTKRQRRPNVRLGEIGDTSAAFACGFSQVTTTKEKLGHKRWKNDFGNPSERGQNLICGFSEKDSELTISDPGVSPR--NSADSQQNRENKNPNSLR-AVEFMRLDRTGMVKSTLDFGNITRKCRGM 129 HSP 2 Score: 90.8929 bits (224), Expect = 8.990e-17 Identity = 67/128 (52.34%), Postives = 78/128 (60.94%), Query Frame = -1 Query: 877 DHETSANSKDACEYNVDEPGY-----------DSW-KDAFYEGNNVFLKSDDAWDQTIYTHNDTTSVRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLRGNDSS 1224 D ET A SK+A Y D G D W +D +E N K WD+ DT VR WLE++GFG+YA FEMHEVDEE+L LLT +DLKEMG+FAVG RRKLYNAIQ+LRG D S Sbjct: 131 DCETPATSKEA--YECDAYGSNHDLHRKGDFGDYWNEDTCFEENEA-TKCGGVWDEIKSEGGDTNCVRTWLEEMGFGKYADAFEMHEVDEEALLLLTLEDLKEMGVFAVGPRRKLYNAIQQLRGGDLS 255
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: W1PGI1_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00016p00140810 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.255e-20 Identity = 97/311 (31.19%), Postives = 141/311 (45.34%), Query Frame = -1 Query: 889 VNSKRQRRPNVRLGEIGYVSAAFACGFSQKTKENLVHKTWKPDS----LYSQHNELDTVIEFSSKGISPDFFISADSQHNTENKNPNSSKPGFDSVGADEIHMMKSGLIFGTVTRK-----------------SRVMKWRGRSREGNNCLFGSAWTRSSKLSPRFTGEDRKEHGEKELTGIGSNAFAGYCPDNVFQDILDHETSANSKDACEYNVDEPGYDSWKDAFYEGNNVFLKSDDAWDQTIYTHNDTTSVRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLRG 1758 + SKR RRP+VRLGEIG A + +++K K+ V + K + L+ HN I+ SK + + DS + + N S + G E+ +K+G G+ T RV+K G RE + L G R S+ R T +R+ + +++ E ++++D +YN D+ K E +KS D ++ GWL ++G GRYA +FEMHEVD LPLLT DDLK+MGI AVG RRK+Y AIQ+LRG Sbjct: 23 LGSKRVRRPSVRLGEIGEQRAYES--YAKKNKQLRVSEEPKSRTSDGYLHHGHN---GAIKAVSKRKASVNLGNGDSHESRGPEEENQSHDLGSNEGNLELVELKAGEPKGSTTHMLESPENATTNVGFSDSYQRVLKAHGNERE--SLLMGKRSHRKSR-GARITDSNREPVASVDCV-----------------EMVGLELPSDAEDRSKYNGDDELRRVEKCGRKERKFGGIKSSQFLDDEVW---------GWLNEMGLGRYAPVFEMHEVDYAVLPLLTLDDLKDMGINAVGSRRKMYCAIQKLRG 299
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: V7B365_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G018900g PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.704e-19 Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = -1 Query: 892 DHETSANSKDACEYNVDEPGYDSWKDAFYEGNNVFLKSDDAWDQTIYTHNDTTSVRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLR 1224 D E + + ++V++ G D W E V + +DA + + VR WL +LG GRYA +FE+HEVD+E LP+LT +DLK+MGI AVG RRK+YNAIQ+LR Sbjct: 152 DFENELDQDQSPVHSVEDNGVDYWHVDRSEDPRVRVSENDAVESESRERRKSDGVRSWLFELGLGRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYNAIQKLR 262
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: A9PEJ7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13200g PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.576e-19 Identity = 92/297 (30.98%), Postives = 138/297 (46.46%), Query Frame = -1 Query: 892 KRQRRPNVRLGEIG--YVSAAFACGFSQKTKENLVHKTWKPDSLYSQHNELDTVIEFSSKGISPDFFISADSQHNTENKNPNSSKPGFDSVGADEIHMMKSGLIFGTVTRKSRVMKWRGRSREGNNCLFGSAWTRSSKLSPRFTGEDRKEHGEKELTGIGSNAFAGYCPDNVFQDILDHETSANSKDACE-YNVDEPGYDSWKDAFYEGNNV--FLKSDDAWDQTIYTHNDTTS------VRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLR 1749 KRQRRP+VRLGEIG + A + TK+ H TW+ S+ S K S ++ +S E++ PN+++ G ++++++ FG + R R RS W S+ R + G+ L SN G+ + D ++ + KD ++V+ D W+ G ++ ++ I ND S VR WL +LG RYA +FE+HEVD++ LPLLT +DLK+MGI AVG RRKLY+AIQ+LR Sbjct: 54 KRQRRPSVRLGEIGDHHHQTAHDTHVRRSTKQLQQHHTWRLPKDSSK----------SIKARSLTHLVNGNSNEIEEHELPNNNQNG-------DLNLLE----FGHGRKAKRGTTKRVRSN----------WISSNS---------RIDEGDTNLEN--SNGEEGFVRE------FDLDSDSPLKDQSPVHSVENVALDFWQGNRRTGTGSGRVRVTESRENEGIEMENDDNSERKWEGVRTWLIELGLSRYAPVFEIHEVDDQVLPLLTLEDLKDMGINAVGSRRKLYSAIQKLR 302
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: A0A0E0P3Y2_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.804e-17 Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = -1 Query: 877 VRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLRGNDSS 1062 V+ WL+ LG RYA +FE+HEVD+E LPLLT +DLK+MGI AVG RRKLY AIQ+L+ +DS+ Sbjct: 6 VKAWLDGLGLSRYAPVFEIHEVDDEVLPLLTLEDLKDMGIGAVGSRRKLYAAIQKLQRSDSA 67
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: A0A0D9W1F0_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.096e-17 Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = -1 Query: 880 VRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLRGNDS 1062 V+ WL+ LG RYA +FE+HEVD+E LPLLT +DLK+MGI AVG RRKLY AIQ+L+ +DS Sbjct: 6 VKAWLDGLGLSRYAPVFEIHEVDDEVLPLLTLEDLKDMGIGAVGSRRKLYAAIQKLQRSDS 66
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Match: A0A0B2Q1G1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016113 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 4.380e-17 Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = -1 Query: 892 YNVDEPGYDSWKDAFYEGNNVFLKSDDAWDQTIYTHNDTTSVRGWLEDLGFGRYAGIFEMHEVDEESLPLLTPDDLKEMGIFAVGHRRKLYNAIQRLR 1185 ++++E G D W E V + +D + + VR WL +LG RYA +FE+HEVD+E LP+LT +DLK+MGI AVG RRK+Y AIQ+LR Sbjct: 82 HSMEENGVDYWHVDRNEDPRVRVSENDGVESESQERRKSDGVRSWLYELGLSRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTAIQKLR 179 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0094672 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094672 ID=g.barbadense_cottongen_reftransV1_0094672; Name=g.barbadense_cottongen_reftransV1_0094672; organism=Gossypium barbadense; type=contig; length=2028bpback to top |