g.barbadense_cottongen_reftransV1_0094670, g.barbadense_cottongen_reftransV1_0094670 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094670
Unique Nameg.barbadense_cottongen_reftransV1_0094670
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt12chromosomeg.barbadense_cottongen_reftransV1_0094670:1..2299 .
Dt12:14493013..14496366 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A067K751_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12398 PE=4 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 4.256e-97
Identity = 193/359 (53.76%), Postives = 236/359 (65.74%), Query Frame = 3
Query:  807 LPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVP---PGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFF--HIRMSFLSSCFTCHG 1868
            +PSKWEDAERWI SPVLGYGV+K      QRRPKSKSGPIVP   PGIA+YSN SPS+  LD     +VRN +A SPFSTGVLM  G+ V+Y                   +   + V+RS   PGWS      SS  S  + KL+ I D +  + RV SRRDMATQMSP+ S+  S     SS    P       A++ +D  +KLD+REVQ+DKRAT+ +R++RHGS   KKG PD +   +N       S D++EA++  SKLQREEAKI AWENLQ+AKAEAAIRKLEMKLEKKRS SMDKIL KLR AQ++AQEMR+++S  E+ Q+ K S K +FF  H R+SFLSSCFTCH 
Sbjct:    1 MPSKWEDAERWISSPVLGYGVTKYTQCQPQRRPKSKSGPIVPIVPPGIAYYSNSSPSVQGLDAA---SVRNFIANSPFSTGVLMPKGLGVNYN--------------GGGGIGGQAFVSRSVSGPGWSDLASECSSPTSQDE-KLENINDDDNTVNRVVSRRDMATQMSPEGSTCSSPRARSSSPSSIP-------ALEQSDLSAKLDIREVQVDKRATLISRTRRHGSSITKKGLPDVQDSNQNPIDPRISSWDVSEASSEFSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSLSMDKILNKLRKAQIRAQEMRNTVSAAEEHQLSKISHKISFFHRHARLSFLSSCFTCHA 334          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A061FBZ8_THECC (Remorin family protein isoform 2 OS=Theobroma cacao GN=TCM_033821 PE=4 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 8.960e-97
Identity = 202/425 (47.53%), Postives = 261/425 (61.41%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVS--QKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK-FTFFHIR-MSFLSSCFTCHGF 1871
            MKK SV+    G FPSPG   Y  +    +  QKGWSSERV      N   RR  +A+ + PF +GRTLPSKWEDAERWI SPV G G  +      QR+PKSKSGP+ PPGIA+YS  SP+M++ DGG +G   N MAGSPFS GV+ ADG+++H     ++   G     + CM +S S    S ++               SQDE L+ +KDA   + R  SRRDMATQMSP  S++ S       F    P  LP+  V  + H SK +VR+VQ+D+R T+T  SK+H +R   K     + + + +  T   + D+ E A +ISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQEMRS +   +  Q+ +TS K  +F   R M  LS CFTCH F
Sbjct:  177 MKKSSVATRKSGAFPSPGTPSYHHHHHSSAGMQKGWSSERVPLH---NNGGRRQGNAAGVLPFNNGRTLPSKWEDAERWIFSPVSGDGGVRQSIVPPQRKPKSKSGPLGPPGIAYYSLYSPAMHMFDGGHTG---NFMAGSPFSAGVIAADGLAIHS----SSHGGGFAARTEPCMARSVSVHGCSEVV---------TPPSFPSQDENLETVKDAATDISRTVSRRDMATQMSPQGSTNSSPKGRP--FSPLTPSALPIMEV-QSIHSSKSEVRDVQVDERVTMTRWSKKHRARNSGKSSEIVDDWRKRAVDTRTSTWDVTETAKNISKIKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQEMRSLMLANQAHQVTRTSHKALSFSRTRQMGSLSGCFTCHAF 579          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: M5XDQ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006694mg PE=4 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 1.252e-96
Identity = 209/425 (49.18%), Postives = 266/425 (62.59%), Query Frame = 3
Query:  642 GTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDE---IKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILP---------LPAVDNNDHPS-KLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHI--RMSFLSSCFTCHGF 1871
            G FPSPG   YR N ++  QKGWSSERV    N     R++ +AS L PF +GRTLPSKWEDAERWI SPV G GV +      QRRPKSKSGP+ PPG+A+YS  SP+M + DG     V N MA SPFS GV+ ADG++ H         +G  +G  +   +++  +ARS  + G S  L  +SSLP SQDEK D    +KDA   + R  SRRDMATQMSPD+S+            HS P   P         LP V+    PS KL+VR+VQ+D R TVT  SK+H SR   KG    + + +  A   + + D+++++ +ISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ KAQ+MRSS+   +  Q+  TS +     I  +M  LS CFTCH F
Sbjct:    7 GNFPSPGTPSYR-NTSLGVQKGWSSERVPAPTNVG---RKNTTASML-PFNNGRTLPSKWEDAERWIFSPVQGDGVVRPSCQQTQRRPKSKSGPLGPPGVAYYSLYSPAMPMFDGT---NVSNFMAASPFSAGVISADGLAFH---------SGAQNG--AFTTRAEPCIARSVSVHGCSEVLDQQSSLPGSQDEKFDGPDGVKDAATNVSRAVSRRDMATQMSPDDST------------HSSPAGGPSYSASSSSGLPIVEVQSAPSLKLEVRDVQVDDRVTVTRWSKKHKSRVPGKGSDIIDNWKKKDADARSAAWDLSDSSKNISKVKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKKAQDMRSSVL-TDQAQVAGTSHRTVSIRITRQMGSLSGCFTCHAF 399          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: B9R7B1_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1590210 PE=4 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 6.657e-96
Identity = 213/424 (50.24%), Postives = 267/424 (62.97%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYG-VSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK-FTFFHIR-MSFLSSCFTCHGF 1871
            MKK + S    GTFPSPG  +YR + +V  QKGWSSERV     SN N R+  +A++     +GRTLPSKWEDAERWI SPV G G +  ++N   QRRPKSKSGP+ PPGIA+YS  SP+M + DGG  G    + A SPFS GV+ ADG+ +   G   A         + CM +S S    S ++P          S  +SQDEKLD +KDA   L  V SRRDMATQMSP+ S+  S +   S F  S P ILP+  V  + H SK  VR+VQ+D+R TVT  SK+H SR   K     + + + S    +   D++EAA  ISK +REEAKI+AWENLQ+AKAEAAIRKLEMKLE+KRS+SMDKI+ KLR+AQ +AQEMRSS+   +  Q+ +TS K  +F   R M  LS CFTCH F
Sbjct:  198 MKKSTTSSRKSGTFPSPGTPNYR-HASVGMQKGWSSERVPLHNLSN-NRRQQANANASLLLPNGRTLPSKWEDAERWIFSPVSGDGGMRTSINQVPQRRPKSKSGPLGPPGIAYYSLYSPAMPVFDGGNMGNF--MSASSPFSAGVIAADGLGMRSNGNGVAFPVRT----EPCMARSVSVHGCSEVLP---------QSSSASQDEKLDGVKDAATDLSSV-SRRDMATQMSPEGSNHSSPSMRTS-FSASTPSILPIVEV-QSVHTSKSQVRDVQVDERVTVTRWSKKHRSRNQGKNSEIVDDWRKKSVDARSSPWDVSEAAKCISKAKREEAKITAWENLQKAKAEAAIRKLEMKLERKRSSSMDKIMNKLRSAQKRAQEMRSSVLTNQANQVSRTSHKAISFRRTRQMGSLSGCFTCHAF 601          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0B0NKK8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_04792 PE=4 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 1.698e-95
Identity = 203/437 (46.45%), Postives = 259/437 (59.27%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPP--------------PILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSP-KFTFFHIR-MSFLSSCFTCHGF 1871
            +KK SV    LG FPSPG  +Y  + +V  QKGWSSERV    +SNG  RR  +AS L  F +GRTLPSKWEDAERWI SPV G   SK    H QRRPKSKSGP+ PPGIA+YS  SP++ + DGG  G   N MAGSPFS GV+ ADG++VH     + +  G         VQ++  + RS  + G      +        +E LD +KDA   + +  SRRDMATQMSP +S+            HS P              PI+ L ++    H SK  +R+V +D+R T+T  SK+H +R   K     + + +    T   + D+ E   SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQ+MRS +   +  Q+ KTS    +F   R MS LS CFTC  F
Sbjct:  177 VKKSSVVPRKLGAFPSPGTPNYHHHSSVGMQKGWSSERVP--LHSNGG-RRQGNASGLLAFNNGRTLPSKWEDAERWIFSPVSGDAGSKQSIVHPQRRPKSKSGPLGPPGIAYYSLYSPALQMFDGGHMG---NFMAGSPFSAGVIAADGLTVH-----SRSHGGGF------AVQTEPCMGRSVSVHG--CSEAANPPSSQDAEENLDVVKDAATDISQTVSRRDMATQMSPQSST------------HSSPKGRPSFSPSSPSALPIMELQSI----HGSKSVLRDVPVDERVTLTRWSKKHRARNTGKSSEIVDDWRKKVVDTCTSTWDVTETGKSISKMKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQDMRSLMLANQAHQVTKTSHMAISFRRTRQMSSLSGCFTCQAF 578          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067K751_JATCU4.256e-9753.76Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A061FBZ8_THECC8.960e-9747.53Remorin family protein isoform 2 OS=Theobroma caca... [more]
M5XDQ2_PRUPE1.252e-9649.18Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9R7B1_RICCO6.657e-9650.24DNA binding protein, putative OS=Ricinus communis ... [more]
A0A0B0NKK8_GOSAR1.698e-9546.45Uncharacterized protein OS=Gossypium arboreum GN=F... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 344..364
NoneNo IPR availablePANTHERPTHR31471:SF2SUBFAMILY NOT NAMEDcoord: 1..419
NoneNo IPR availablePANTHERPTHR31471FAMILY NOT NAMEDcoord: 1..419
IPR005516Remorin, C-terminalPFAMPF03763Remorin_Ccoord: 318..402
e-value: 9.1E-25
score: 86.5

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094670 ID=g.barbadense_cottongen_reftransV1_0094670; Name=g.barbadense_cottongen_reftransV1_0094670; organism=Gossypium barbadense; type=contig; length=2299bp
ATGAAAATGGGAAATGTATGGAAAATGTTCTTAAATTTCAATCTTCAAAG
TCCAAGTATATGGCCTCCTTGTTCTTGTTGGTCACCCATGGATTCTTTTT
CCTTTTTCTTGGGTGGCTTTTCTGTTGTCTTATTCATGTGGTTTTACTTG
AGTATCTGAGATTTCAACTAGTAAAAAAGTAAAAGGACTATGTATAAAAA
CGATGAAAATATCGTTGTCTTTGACAGATACTGCTGATAAAAACGTCTAA
TGCTTACTTCGTCAACATTCTTAGCTTTTGTAATCAATGATTTGAAGCTG
TGTTTTGGCATTTTTCATTCTCAATGGAGCAACCCTTCATGAGGCTTGTC
TTAGATGCAAACAAATCTTTGTACCCAAGGATCGGATAGCTTCCCAAAAT
AATAAATTAATGTAAAAAAAAGGGGTATATAATTAGCTGCAAACAACAGT
AAAAACCAGCTTTCAAACAAATTCTTTCATTGTCTCAATGACCCTTTTAG
ACAGTCTTGCCGGCAAACCGAATAATCAATTTTATCTGTTCAAAGTCTAG
CTCTTTCTGGCACTGGGTGAGGTATCAGGCTAAGACTGTTGGGGGTGATT
GAGAGTGAATGAAGAAAGGGTCTGTTTCTTTGAGCCATCTGGGTACTTTT
CCAAGCCCAGGAGGTTCAGATTACCGTGATAATGGGGCGGTGGTGAGTCA
AAAAGGTTGGAGTTCAGAGCGAGTGGCGCGTTCAGCTAACAGCAATGGCA
ATAGCAGAAGACATATCAGTGCTTCATCTTTGACACCTTTTTACAGTGGA
AGAACTTTGCCTTCCAAATGGGAAGATGCTGAGAGGTGGATTTGTAGCCC
TGTTTTGGGTTATGGTGTTAGCAAGAACGTAAACTATCATCTCCAGAGGC
GGCCAAAGTCTAAAAGTGGGCCGATTGTGCCCCCTGGGATTGCTTTCTAC
TCCAATTGCTCGCCTTCCATGAACTTGCTTGATGGTGGAGGGAGTGGGAC
TGTGAGGAATTTAATGGCAGGGTCTCCATTTTCAACTGGGGTTTTGATGG
CTGATGGGGTTTCCGTTCATTATCTTGGTTGTAGAGCCGCCGCAGCTGCT
GGAGATGTTGACGGCGATCAATCTTGTATGGTGCAGAGTGATAGTAATGT
AGCACGATCCGCTATTATACCTGGATGGTCGTCAGATTTGGTCAGTGAGT
CTTCATTGCCAAGCTCTCAAGATGAAAAACTTGATGAAATCAAGGATGCC
GAAATGATGCTGTGTCGTGTAGCTTCGCGGAGGGATATGGCTACACAAAT
GAGCCCGGACAACAGTAGCAGCCACTCATCTACTAGAGCGAGGTCTTCAT
TCGGCCACTCACCTCCCCCTATCCTTCCTCTTCCTGCTGTGGACAACAAT
GATCATCCTTCTAAACTGGACGTCAGGGAAGTGCAGATAGACAAACGAGC
CACTGTTACTAACCGGTCAAAAAGGCATGGGTCGAGAAGAATCAAGAAAG
GCGAGCCGGATTTTGAAGGCTTCTACCGAAACAGCGCCCCAACTTCTGCT
TTATCTCTGGATATCGCAGAGGCAGCAACAAGCATTTCAAAGTTGCAAAG
AGAGGAAGCAAAGATCAGTGCTTGGGAGAATCTGCAGAGGGCAAAAGCTG
AGGCAGCCATACGTAAACTAGAGATGAAATTAGAAAAGAAGAGATCAGCT
TCAATGGATAAGATCTTGAGGAAGCTGAGAACGGCTCAGGTGAAAGCTCA
AGAAATGAGGAGTTCCATATCAGGCAAAGAGGATGAACAGATTCCCAAGA
CTTCACCGAAGTTTACATTCTTCCATATCCGCATGAGTTTTCTCAGCAGT
TGCTTCACCTGCCATGGTTTCTAGTTTCTTGCAAATCTTATGTCCATATC
CTCAAATCTTTTCCATAAAGTATTAGCTTCCAATGGAGTATTTGTTTCCG
GATTTTTTTCGCTGCTGGTTTCTCGGCTTCCCTACTCTTCCATGTAAATT
ATCTTAAGATTTCTAGATTCGATGGTCCAGGAGACTGCAGATTTCAACTT
CTTGTTCTTAGTGGATGTGATTTTTTTTGGTTCTTTTTTAAAGGAAATGT
CATCTTTTATGCTTTGCAATGTCAACTAACTAGAATAGGTTAGCTTATAT
ATTTGCTTTACTGTCTGATAAGTTAGTGATGAAACATAAAAATACCAGCT
TAATGTATGACAGGGTATACCAACAATTCCATGCAAAATATTTGTAACTT
GCATACCATTGACGGTAAGTTTCAGATGGAAGTGTTTGGTAAAGATAGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005516Remorin_C