g.barbadense_cottongen_reftransV1_0094670, g.barbadense_cottongen_reftransV1_0094670 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A067K751_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12398 PE=4 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 4.256e-97 Identity = 193/359 (53.76%), Postives = 236/359 (65.74%), Query Frame = 3 Query: 807 LPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVP---PGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFF--HIRMSFLSSCFTCHG 1868 +PSKWEDAERWI SPVLGYGV+K QRRPKSKSGPIVP PGIA+YSN SPS+ LD +VRN +A SPFSTGVLM G+ V+Y + + V+RS PGWS SS S + KL+ I D + + RV SRRDMATQMSP+ S+ S SS P A++ +D +KLD+REVQ+DKRAT+ +R++RHGS KKG PD + +N S D++EA++ SKLQREEAKI AWENLQ+AKAEAAIRKLEMKLEKKRS SMDKIL KLR AQ++AQEMR+++S E+ Q+ K S K +FF H R+SFLSSCFTCH Sbjct: 1 MPSKWEDAERWISSPVLGYGVTKYTQCQPQRRPKSKSGPIVPIVPPGIAYYSNSSPSVQGLDAA---SVRNFIANSPFSTGVLMPKGLGVNYN--------------GGGGIGGQAFVSRSVSGPGWSDLASECSSPTSQDE-KLENINDDDNTVNRVVSRRDMATQMSPEGSTCSSPRARSSSPSSIP-------ALEQSDLSAKLDIREVQVDKRATLISRTRRHGSSITKKGLPDVQDSNQNPIDPRISSWDVSEASSEFSKLQREEAKIIAWENLQKAKAEAAIRKLEMKLEKKRSLSMDKILNKLRKAQIRAQEMRNTVSAAEEHQLSKISHKISFFHRHARLSFLSSCFTCHA 334
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A061FBZ8_THECC (Remorin family protein isoform 2 OS=Theobroma cacao GN=TCM_033821 PE=4 SV=1) HSP 1 Score: 323.939 bits (829), Expect = 8.960e-97 Identity = 202/425 (47.53%), Postives = 261/425 (61.41%), Query Frame = 3 Query: 609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVS--QKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK-FTFFHIR-MSFLSSCFTCHGF 1871 MKK SV+ G FPSPG Y + + QKGWSSERV N RR +A+ + PF +GRTLPSKWEDAERWI SPV G G + QR+PKSKSGP+ PPGIA+YS SP+M++ DGG +G N MAGSPFS GV+ ADG+++H ++ G + CM +S S S ++ SQDE L+ +KDA + R SRRDMATQMSP S++ S F P LP+ V + H SK +VR+VQ+D+R T+T SK+H +R K + + + + T + D+ E A +ISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQEMRS + + Q+ +TS K +F R M LS CFTCH F Sbjct: 177 MKKSSVATRKSGAFPSPGTPSYHHHHHSSAGMQKGWSSERVPLH---NNGGRRQGNAAGVLPFNNGRTLPSKWEDAERWIFSPVSGDGGVRQSIVPPQRKPKSKSGPLGPPGIAYYSLYSPAMHMFDGGHTG---NFMAGSPFSAGVIAADGLAIHS----SSHGGGFAARTEPCMARSVSVHGCSEVV---------TPPSFPSQDENLETVKDAATDISRTVSRRDMATQMSPQGSTNSSPKGRP--FSPLTPSALPIMEV-QSIHSSKSEVRDVQVDERVTMTRWSKKHRARNSGKSSEIVDDWRKRAVDTRTSTWDVTETAKNISKIKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQEMRSLMLANQAHQVTRTSHKALSFSRTRQMGSLSGCFTCHAF 579
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: M5XDQ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006694mg PE=4 SV=1) HSP 1 Score: 317.775 bits (813), Expect = 1.252e-96 Identity = 209/425 (49.18%), Postives = 266/425 (62.59%), Query Frame = 3 Query: 642 GTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDE---IKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILP---------LPAVDNNDHPS-KLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFHI--RMSFLSSCFTCHGF 1871 G FPSPG YR N ++ QKGWSSERV N R++ +AS L PF +GRTLPSKWEDAERWI SPV G GV + QRRPKSKSGP+ PPG+A+YS SP+M + DG V N MA SPFS GV+ ADG++ H +G +G + +++ +ARS + G S L +SSLP SQDEK D +KDA + R SRRDMATQMSPD+S+ HS P P LP V+ PS KL+VR+VQ+D R TVT SK+H SR KG + + + A + + D+++++ +ISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ KAQ+MRSS+ + Q+ TS + I +M LS CFTCH F Sbjct: 7 GNFPSPGTPSYR-NTSLGVQKGWSSERVPAPTNVG---RKNTTASML-PFNNGRTLPSKWEDAERWIFSPVQGDGVVRPSCQQTQRRPKSKSGPLGPPGVAYYSLYSPAMPMFDGT---NVSNFMAASPFSAGVISADGLAFH---------SGAQNG--AFTTRAEPCIARSVSVHGCSEVLDQQSSLPGSQDEKFDGPDGVKDAATNVSRAVSRRDMATQMSPDDST------------HSSPAGGPSYSASSSSGLPIVEVQSAPSLKLEVRDVQVDDRVTVTRWSKKHKSRVPGKGSDIIDNWKKKDADARSAAWDLSDSSKNISKVKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKKAQDMRSSVL-TDQAQVAGTSHRTVSIRITRQMGSLSGCFTCHAF 399
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: B9R7B1_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1590210 PE=4 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 6.657e-96 Identity = 213/424 (50.24%), Postives = 267/424 (62.97%), Query Frame = 3 Query: 609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYG-VSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK-FTFFHIR-MSFLSSCFTCHGF 1871 MKK + S GTFPSPG +YR + +V QKGWSSERV SN N R+ +A++ +GRTLPSKWEDAERWI SPV G G + ++N QRRPKSKSGP+ PPGIA+YS SP+M + DGG G + A SPFS GV+ ADG+ + G A + CM +S S S ++P S +SQDEKLD +KDA L V SRRDMATQMSP+ S+ S + S F S P ILP+ V + H SK VR+VQ+D+R TVT SK+H SR K + + + S + D++EAA ISK +REEAKI+AWENLQ+AKAEAAIRKLEMKLE+KRS+SMDKI+ KLR+AQ +AQEMRSS+ + Q+ +TS K +F R M LS CFTCH F Sbjct: 198 MKKSTTSSRKSGTFPSPGTPNYR-HASVGMQKGWSSERVPLHNLSN-NRRQQANANASLLLPNGRTLPSKWEDAERWIFSPVSGDGGMRTSINQVPQRRPKSKSGPLGPPGIAYYSLYSPAMPVFDGGNMGNF--MSASSPFSAGVIAADGLGMRSNGNGVAFPVRT----EPCMARSVSVHGCSEVLP---------QSSSASQDEKLDGVKDAATDLSSV-SRRDMATQMSPEGSNHSSPSMRTS-FSASTPSILPIVEV-QSVHTSKSQVRDVQVDERVTVTRWSKKHRSRNQGKNSEIVDDWRKKSVDARSSPWDVSEAAKCISKAKREEAKITAWENLQKAKAEAAIRKLEMKLERKRSSSMDKIMNKLRSAQKRAQEMRSSVLTNQANQVSRTSHKAISFRRTRQMGSLSGCFTCHAF 601
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0B0NKK8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_04792 PE=4 SV=1) HSP 1 Score: 320.472 bits (820), Expect = 1.698e-95 Identity = 203/437 (46.45%), Postives = 259/437 (59.27%), Query Frame = 3 Query: 609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPP--------------PILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSP-KFTFFHIR-MSFLSSCFTCHGF 1871 +KK SV LG FPSPG +Y + +V QKGWSSERV +SNG RR +AS L F +GRTLPSKWEDAERWI SPV G SK H QRRPKSKSGP+ PPGIA+YS SP++ + DGG G N MAGSPFS GV+ ADG++VH + + G VQ++ + RS + G + +E LD +KDA + + SRRDMATQMSP +S+ HS P PI+ L ++ H SK +R+V +D+R T+T SK+H +R K + + + T + D+ E SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQ+MRS + + Q+ KTS +F R MS LS CFTC F Sbjct: 177 VKKSSVVPRKLGAFPSPGTPNYHHHSSVGMQKGWSSERVP--LHSNGG-RRQGNASGLLAFNNGRTLPSKWEDAERWIFSPVSGDAGSKQSIVHPQRRPKSKSGPLGPPGIAYYSLYSPALQMFDGGHMG---NFMAGSPFSAGVIAADGLTVH-----SRSHGGGF------AVQTEPCMGRSVSVHG--CSEAANPPSSQDAEENLDVVKDAATDISQTVSRRDMATQMSPQSST------------HSSPKGRPSFSPSSPSALPIMELQSI----HGSKSVLRDVPVDERVTLTRWSKKHRARNTGKSSEIVDDWRKKVVDTCTSTWDVTETGKSISKMKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQDMRSLMLANQAHQVTKTSHMAISFRRTRQMSSLSGCFTCQAF 578 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094670 ID=g.barbadense_cottongen_reftransV1_0094670; Name=g.barbadense_cottongen_reftransV1_0094670; organism=Gossypium barbadense; type=contig; length=2299bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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