g.barbadense_cottongen_reftransV1_0094670, g.barbadense_cottongen_reftransV1_0094670 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094670
Unique Nameg.barbadense_cottongen_reftransV1_0094670
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Dt12chromosomeg.barbadense_cottongen_reftransV1_0094670:1..2299 .
Dt12:14493013..14496366 +
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: E0CPU6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10420 PE=4 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 9.869e-101
Identity = 212/412 (51.46%), Postives = 276/412 (66.99%), Query Frame = 3
Query:  642 GTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK-FTFFHIR-MSFLSSCFTCHGF 1871
            GTFPSPG  +YR +   + QKGWSSERV    N N   RRH+SA+ L PF +GRTLPSKWEDAERWI SPV G GV K      QRRPKSKSGP+ PPGIA+YS  SP++ + +GG +G   N MAGSPFS GV+  DG+++H  G       G V       V+++  + RSA + G  S+L+++SSL  S+DEK D +KDA   + R  SRRD+ATQMSP+ S   S  R  S F  S P +LP+  + + +  SKL++R+VQ+D+R T+T  SK+H  R   KG  + +G+ + +    + + +++E A SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ KAQEMRSS+      Q+   + K  +F   R MS LS CFTCH F
Sbjct:  181 GTFPSPGTPNYRHSNFGI-QKGWSSERVPSHTNVN---RRHVSAA-LLPFNNGRTLPSKWEDAERWIFSPVAGDGVVKPSFPPPQRRPKSKSGPLGPPGIAYYSLYSPAIPMFEGGNAG---NFMAGSPFSAGVIAPDGLAIHCGG------RGGV-----MPVRTEPCMGRSASVHG-CSELLNQSSLRDSRDEKFDGVKDAATDISRTVSRRDIATQMSPEGSIFSSPERKPS-FSPSSPTVLPIVELQSVNS-SKLEIRDVQVDERVTMTRWSKKHRGRIPGKGSENVDGWKKKAVEAHSSAWEVSETAKSISKVKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQRKAQEMRSSVLANHAHQVSGNAHKAVSFCKTRQMSSLSGCFTCHAF 570          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A061FIW3_THECC (Remorin family protein isoform 3 OS=Theobroma cacao GN=TCM_033821 PE=4 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 4.294e-100
Identity = 203/425 (47.76%), Postives = 261/425 (61.41%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVS--QKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK-FTFFHIR-MSFLSSCFTCHGF 1871
            MKK SV+    G FPSPG   Y  +    +  QKGWSSERV      N   RR  +A+ + PF +GRTLPSKWEDAERWI SPV G G  +      QR+PKSKSGP+ PPGIA+YS  SP+M++ DGG +G   N MAGSPFS GV+ ADG+++H     ++   G     + CM       ARS  + G S  +   S      DE L+ +KDA   + R  SRRDMATQMSP  S++ S       F    P  LP+  V  + H SK +VR+VQ+D+R T+T  SK+H +R   K     + + + +  T   + D+ E A +ISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQEMRS +   +  Q+ +TS K  +F   R M  LS CFTCH F
Sbjct:    1 MKKSSVATRKSGAFPSPGTPSYHHHHHSSAGMQKGWSSERVPLH---NNGGRRQGNAAGVLPFNNGRTLPSKWEDAERWIFSPVSGDGGVRQSIVPPQRKPKSKSGPLGPPGIAYYSLYSPAMHMFDGGHTG---NFMAGSPFSAGVIAADGLAIHS----SSHGGGFAARTEPCM-------ARSVSVHGCSEVVTPPSFPSQDADENLETVKDAATDISRTVSRRDMATQMSPQGSTNSSPKGRP--FSPLTPSALPIMEV-QSIHSSKSEVRDVQVDERVTMTRWSKKHRARNSGKSSEIVDDWRKRAVDTRTSTWDVTETAKNISKIKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQEMRSLMLANQAHQVTRTSHKALSFSRTRQMGSLSGCFTCHAF 405          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0D2QKE4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212800 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 1.145e-98
Identity = 205/437 (46.91%), Postives = 261/437 (59.73%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPP--------------PILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSP-KFTFFHIR-MSFLSSCFTCHGF 1871
            +KK SV    LG FPSPG  +Y  N +V  QKGWSSERVA   +SNG  RR  +AS L  F +GRTLPSKWEDAERWI SPV G   SK    H QRRPKSKSGP+ PPGIA+YS  SP++ + DGG  G   N MAGSPFS GV+ ADG++VH     + +  G         VQ++  + RS  + G      +        +E LD +KDA   + +  SRRDMATQMSP +S+            HS P              PI+ L ++    H SK  +R+V +D+R T+T  SK+H +R   K     + + +    T   + D+ E   SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQ+MR+S+   +  Q+ KTS    +F   R MS LS CFTC  F
Sbjct:  111 VKKSSVVTRKLGAFPSPGTPNYHHNSSVGMQKGWSSERVA--LHSNGG-RRQGNASGLLAFNNGRTLPSKWEDAERWIFSPVSGDAGSKQSIVHPQRRPKSKSGPLGPPGIAYYSLYSPALQMFDGGHMG---NFMAGSPFSAGVIAADGLTVH-----SRSHGGGF------AVQTEPCMGRSVSVHG--CSEAANPPSSQDAEENLDVVKDAATDISQTVSRRDMATQMSPQSST------------HSSPKGRPSFSPSSPSALPIMELQSI----HGSKSLLRDVPVDERVTLTRWSKKHRARNTGKSSEIVDDWRKKVVDTCTSTWDVTETGKSISKMKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQDMRNSMLANQAHQVTKTSHMAISFRRTRQMSSLSGCFTCQAF 512          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A067KQD0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04252 PE=4 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.410e-98
Identity = 209/412 (50.73%), Postives = 270/412 (65.53%), Query Frame = 3
Query:  642 GTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPKFTFFH--IRMSFLSSCFTCHGF 1871
            GTFPSPG  +YR + +V  QKGWSSERV    ++NGN RR +S S+L PF++GRTLPSKWEDAERWI SPV G G ++       RRPKSKSGP+ PPGIA+YS  SP+M + DG   G   NL+A SPFS GV+ ADGV++            +  G  +  V+++  +ARS  + G     V + S   SQDEKLD +KDA   +    SRRDMATQMSP+ S+  S +R  S F  S P  LP+  +  N H +K +VR+VQ+D+R TVT  SK+H +R   K     + + + +    + + D++EAA SISK +REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQEMRSS+   +  Q+ +TS K   F    +M  LS CFTCH F
Sbjct:  205 GTFPSPGTPNYR-HASVGMQKGWSSERVP--LHTNGN-RRQVS-SALLPFHNGRTLPSKWEDAERWIFSPVSGDGAARASLQAPHRRPKSKSGPLGPPGIAYYSLYSPAMPVFDGTHVG---NLLASSPFSAGVIAADGVAIR----------SNAHG-VAFPVRTEPCMARSVSVHG--CSEVLDQSSLPSQDEKLDGVKDAATDISSAVSRRDMATQMSPEGSNHSSPSRRLS-FSASTPSALPIVEL-QNIHSNKSEVRDVQMDERVTVTRWSKKHRTRNQGKSSEIVDDWRKKAVDARSSAWDVSEAAKSISKAKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQEMRSSVLANQAHQVSRTSHKVISFRRTRQMGSLSGCFTCHAF 593          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0D2S5L2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212800 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 3.322e-98
Identity = 205/437 (46.91%), Postives = 261/437 (59.73%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPP--------------PILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSP-KFTFFHIR-MSFLSSCFTCHGF 1871
            +KK SV    LG FPSPG  +Y  N +V  QKGWSSERVA   +SNG  RR  +AS L  F +GRTLPSKWEDAERWI SPV G   SK    H QRRPKSKSGP+ PPGIA+YS  SP++ + DGG  G   N MAGSPFS GV+ ADG++VH     + +  G         VQ++  + RS  + G      +        +E LD +KDA   + +  SRRDMATQMSP +S+            HS P              PI+ L ++    H SK  +R+V +D+R T+T  SK+H +R   K     + + +    T   + D+ E   SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQ+MR+S+   +  Q+ KTS    +F   R MS LS CFTC  F
Sbjct:  147 VKKSSVVTRKLGAFPSPGTPNYHHNSSVGMQKGWSSERVA--LHSNGG-RRQGNASGLLAFNNGRTLPSKWEDAERWIFSPVSGDAGSKQSIVHPQRRPKSKSGPLGPPGIAYYSLYSPALQMFDGGHMG---NFMAGSPFSAGVIAADGLTVH-----SRSHGGGF------AVQTEPCMGRSVSVHG--CSEAANPPSSQDAEENLDVVKDAATDISQTVSRRDMATQMSPQSST------------HSSPKGRPSFSPSSPSALPIMELQSI----HGSKSLLRDVPVDERVTLTRWSKKHRARNTGKSSEIVDDWRKKVVDTCTSTWDVTETGKSISKMKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQDMRNSMLANQAHQVTKTSHMAISFRRTRQMSSLSGCFTCQAF 548          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0D2TTA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212800 PE=4 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.517e-98
Identity = 205/437 (46.91%), Postives = 261/437 (59.73%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPP--------------PILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSP-KFTFFHIR-MSFLSSCFTCHGF 1871
            +KK SV    LG FPSPG  +Y  N +V  QKGWSSERVA   +SNG  RR  +AS L  F +GRTLPSKWEDAERWI SPV G   SK    H QRRPKSKSGP+ PPGIA+YS  SP++ + DGG  G   N MAGSPFS GV+ ADG++VH     + +  G         VQ++  + RS  + G      +        +E LD +KDA   + +  SRRDMATQMSP +S+            HS P              PI+ L ++    H SK  +R+V +D+R T+T  SK+H +R   K     + + +    T   + D+ E   SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQ+MR+S+   +  Q+ KTS    +F   R MS LS CFTC  F
Sbjct:  177 VKKSSVVTRKLGAFPSPGTPNYHHNSSVGMQKGWSSERVA--LHSNGG-RRQGNASGLLAFNNGRTLPSKWEDAERWIFSPVSGDAGSKQSIVHPQRRPKSKSGPLGPPGIAYYSLYSPALQMFDGGHMG---NFMAGSPFSAGVIAADGLTVH-----SRSHGGGF------AVQTEPCMGRSVSVHG--CSEAANPPSSQDAEENLDVVKDAATDISQTVSRRDMATQMSPQSST------------HSSPKGRPSFSPSSPSALPIMELQSI----HGSKSLLRDVPVDERVTLTRWSKKHRARNTGKSSEIVDDWRKKVVDTCTSTWDVTETGKSISKMKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQDMRNSMLANQAHQVTKTSHMAISFRRTRQMSSLSGCFTCQAF 578          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A061FCH1_THECC (Remorin family protein isoform 1 OS=Theobroma cacao GN=TCM_033821 PE=4 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.912e-98
Identity = 203/425 (47.76%), Postives = 261/425 (61.41%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVS--QKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK-FTFFHIR-MSFLSSCFTCHGF 1871
            MKK SV+    G FPSPG   Y  +    +  QKGWSSERV      N   RR  +A+ + PF +GRTLPSKWEDAERWI SPV G G  +      QR+PKSKSGP+ PPGIA+YS  SP+M++ DGG +G   N MAGSPFS GV+ ADG+++H     ++   G     + CM       ARS  + G S  +   S      DE L+ +KDA   + R  SRRDMATQMSP  S++ S       F    P  LP+  V  + H SK +VR+VQ+D+R T+T  SK+H +R   K     + + + +  T   + D+ E A +ISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQEMRS +   +  Q+ +TS K  +F   R M  LS CFTCH F
Sbjct:  177 MKKSSVATRKSGAFPSPGTPSYHHHHHSSAGMQKGWSSERVPLH---NNGGRRQGNAAGVLPFNNGRTLPSKWEDAERWIFSPVSGDGGVRQSIVPPQRKPKSKSGPLGPPGIAYYSLYSPAMHMFDGGHTG---NFMAGSPFSAGVIAADGLAIHS----SSHGGGFAARTEPCM-------ARSVSVHGCSEVVTPPSFPSQDADENLETVKDAATDISRTVSRRDMATQMSPQGSTNSSPKGRP--FSPLTPSALPIMEV-QSIHSSKSEVRDVQVDERVTMTRWSKKHRARNSGKSSEIVDDWRKRAVDTRTSTWDVTETAKNISKIKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQEMRSLMLANQAHQVTRTSHKALSFSRTRQMGSLSGCFTCHAF 581          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0D2URH4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212800 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 7.944e-98
Identity = 209/437 (47.83%), Postives = 266/437 (60.87%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPP--------------PILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSP-KFTFFHIR-MSFLSSCFTCHGF 1871
            +KK SV    LG FPSPG  +Y  N +V  QKGWSSERVA   +SNG  RR  +AS L  F +GRTLPSKWEDAERWI SPV G   SK    H QRRPKSKSGP+ PPGIA+YS  SP++ + DGG  G   N MAGSPFS GV+ ADG++VH     + +  G         VQ++  + RS  + G        ++ PSSQ+E LD +KDA   + +  SRRDMATQMSP +S+            HS P              PI+ L ++    H SK  +R+V +D+R T+T  SK+H +R   K     + + +    T   + D+ E   SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQ+MR+S+   +  Q+ KTS    +F   R MS LS CFTC  F
Sbjct:  177 VKKSSVVTRKLGAFPSPGTPNYHHNSSVGMQKGWSSERVA--LHSNGG-RRQGNASGLLAFNNGRTLPSKWEDAERWIFSPVSGDAGSKQSIVHPQRRPKSKSGPLGPPGIAYYSLYSPALQMFDGGHMG---NFMAGSPFSAGVIAADGLTVH-----SRSHGGGF------AVQTEPCMGRSVSVHG----CSEAANPPSSQEENLDVVKDAATDISQTVSRRDMATQMSPQSST------------HSSPKGRPSFSPSSPSALPIMELQSI----HGSKSLLRDVPVDERVTLTRWSKKHRARNTGKSSEIVDDWRKKVVDTCTSTWDVTETGKSISKMKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQDMRNSMLANQAHQVTKTSHMAISFRRTRQMSSLSGCFTCQAF 576          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: A0A0D2S5K4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G212800 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 7.982e-98
Identity = 205/437 (46.91%), Postives = 261/437 (59.73%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXKLDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPP--------------PILPLPAVDNNDHPSKLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSP-KFTFFHIR-MSFLSSCFTCHGF 1871
            +KK SV    LG FPSPG  +Y  N +V  QKGWSSERVA   +SNG  RR  +AS L  F +GRTLPSKWEDAERWI SPV G   SK    H QRRPKSKSGP+ PPGIA+YS  SP++ + DGG  G   N MAGSPFS GV+ ADG++VH     + +  G         VQ++  + RS  + G      +        +E LD +KDA   + +  SRRDMATQMSP +S+            HS P              PI+ L ++    H SK  +R+V +D+R T+T  SK+H +R   K     + + +    T   + D+ E   SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SMDKI+ KLR+AQ +AQ+MR+S+   +  Q+ KTS    +F   R MS LS CFTC  F
Sbjct:  174 VKKSSVVTRKLGAFPSPGTPNYHHNSSVGMQKGWSSERVA--LHSNGG-RRQGNASGLLAFNNGRTLPSKWEDAERWIFSPVSGDAGSKQSIVHPQRRPKSKSGPLGPPGIAYYSLYSPALQMFDGGHMG---NFMAGSPFSAGVIAADGLTVH-----SRSHGGGF------AVQTEPCMGRSVSVHG--CSEAANPPSSQDAEENLDVVKDAATDISQTVSRRDMATQMSPQSST------------HSSPKGRPSFSPSSPSALPIMELQSI----HGSKSLLRDVPVDERVTLTRWSKKHRARNTGKSSEIVDDWRKKVVDTCTSTWDVTETGKSISKMKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMDKIMNKLRSAQKRAQDMRNSMLANQAHQVTKTSHMAISFRRTRQMSSLSGCFTCQAF 575          
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Match: W9SYA1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009552 PE=4 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.086e-97
Identity = 207/426 (48.59%), Postives = 268/426 (62.91%), Query Frame = 3
Query:  609 MKKGSVSLSHLGTFPSPGGSDYRDNGAVVSQKGWSSERVARSANSNGNSRRHISASSLTPFYSGRTLPSKWEDAERWICSPVLGYGVSKNVNYHLQRRPKSKSGPIVPPGIAFYSNCSPSMNLLDGGGSGTVRNLMAGSPFSTGVLMADGVSVHYLGCRXXXXXGDVDGDQSCMVQSDSNVARSAIIPGWXXXXXXXXXXXXXXXXK-LDEIKDAEMMLCRVASRRDMATQMSPDNXXXXXXXXXXXXFGHSPPPILPLPAVDNNDHPS-KLDVREVQIDKRATVTNRSKRHGSRRIKKGEPDFEGFYRNSAPTSALSLDIAEAATSISKLQREEAKISAWENLQRAKAEAAIRKLEMKLEKKRSASMDKILRKLRTAQVKAQEMRSSISGKEDEQIPKTSPK--FTFFHIR-MSFLSSCFTCHGF 1871
            +KK S++    G FPSPG  +YR + +V  QKGWSSERV   +N+    R H +A  L PF SG+TLPSKWEDAERWI SPV G G  ++     QRRPKSKSGP+ PPGIA+YS  SP++ + DGG  G   N MA SPFS GV+ ADG     LG +     G      +  V+++  +ARS  + G S  L   S        + LD +KDA   + R  SRRDMATQMSPD S+  S       +  S P ILP+  ++    PS KL+VR+VQ+D+R T+T  SK+H SR   KG   FE + +      + + D+++ A SISK++REEAKI+AWENLQ+AKAEAAIRKLEMKLEKKRS+SM+KI++KLR+AQ +AQEMRSS    +  Q+ ++S     +F   R MS LS CFTCH F
Sbjct:  170 IKKASLTSRRSGNFPSPGTPNYR-HASVGMQKGWSSERVPLHSNAG---RTHANAL-LLPFNSGKTLPSKWEDAERWIFSPV-GDGAVRSSYQQPQRRPKSKSGPLGPPGIAYYSLYSPAIQMFDGGSVG---NFMAASPFSAGVIAADG-----LGIQTNGHGG------AFPVRTEPCMARSVSVHGCSEMLTQSSVPVPEGTNENLDGVKDAATNVSRAVSRRDMATQMSPDGSTHSSPKTGP--YSDSTPSILPI--LELESAPSCKLEVRDVQVDERVTMTRWSKKHRSRIPVKGSEIFENWKKKDGDARSPAWDLSDTAKSISKVKREEAKITAWENLQKAKAEAAIRKLEMKLEKKRSSSMNKIMKKLRSAQKRAQEMRSSAIANQAHQVTRSSSHKAVSFRRTRQMSSLSGCFTCHAF 571          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0094670 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
E0CPU6_VITVI9.869e-10151.46Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A061FIW3_THECC4.294e-10047.76Remorin family protein isoform 3 OS=Theobroma caca... [more]
A0A0D2QKE4_GOSRA1.145e-9846.91Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067KQD0_JATCU2.410e-9850.73Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A0D2S5L2_GOSRA3.322e-9846.91Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TTA6_GOSRA6.517e-9846.91Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FCH1_THECC6.912e-9847.76Remorin family protein isoform 1 OS=Theobroma caca... [more]
A0A0D2URH4_GOSRA7.944e-9847.83Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2S5K4_GOSRA7.982e-9846.91Uncharacterized protein OS=Gossypium raimondii GN=... [more]
W9SYA1_9ROSA2.086e-9748.59Uncharacterized protein OS=Morus notabilis GN=L484... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 344..364
NoneNo IPR availablePANTHERPTHR31471:SF2SUBFAMILY NOT NAMEDcoord: 1..419
NoneNo IPR availablePANTHERPTHR31471FAMILY NOT NAMEDcoord: 1..419
IPR005516Remorin, C-terminalPFAMPF03763Remorin_Ccoord: 318..402
e-value: 9.1E-25
score: 86.5

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094670 ID=g.barbadense_cottongen_reftransV1_0094670; Name=g.barbadense_cottongen_reftransV1_0094670; organism=Gossypium barbadense; type=contig; length=2299bp
ATGAAAATGGGAAATGTATGGAAAATGTTCTTAAATTTCAATCTTCAAAG
TCCAAGTATATGGCCTCCTTGTTCTTGTTGGTCACCCATGGATTCTTTTT
CCTTTTTCTTGGGTGGCTTTTCTGTTGTCTTATTCATGTGGTTTTACTTG
AGTATCTGAGATTTCAACTAGTAAAAAAGTAAAAGGACTATGTATAAAAA
CGATGAAAATATCGTTGTCTTTGACAGATACTGCTGATAAAAACGTCTAA
TGCTTACTTCGTCAACATTCTTAGCTTTTGTAATCAATGATTTGAAGCTG
TGTTTTGGCATTTTTCATTCTCAATGGAGCAACCCTTCATGAGGCTTGTC
TTAGATGCAAACAAATCTTTGTACCCAAGGATCGGATAGCTTCCCAAAAT
AATAAATTAATGTAAAAAAAAGGGGTATATAATTAGCTGCAAACAACAGT
AAAAACCAGCTTTCAAACAAATTCTTTCATTGTCTCAATGACCCTTTTAG
ACAGTCTTGCCGGCAAACCGAATAATCAATTTTATCTGTTCAAAGTCTAG
CTCTTTCTGGCACTGGGTGAGGTATCAGGCTAAGACTGTTGGGGGTGATT
GAGAGTGAATGAAGAAAGGGTCTGTTTCTTTGAGCCATCTGGGTACTTTT
CCAAGCCCAGGAGGTTCAGATTACCGTGATAATGGGGCGGTGGTGAGTCA
AAAAGGTTGGAGTTCAGAGCGAGTGGCGCGTTCAGCTAACAGCAATGGCA
ATAGCAGAAGACATATCAGTGCTTCATCTTTGACACCTTTTTACAGTGGA
AGAACTTTGCCTTCCAAATGGGAAGATGCTGAGAGGTGGATTTGTAGCCC
TGTTTTGGGTTATGGTGTTAGCAAGAACGTAAACTATCATCTCCAGAGGC
GGCCAAAGTCTAAAAGTGGGCCGATTGTGCCCCCTGGGATTGCTTTCTAC
TCCAATTGCTCGCCTTCCATGAACTTGCTTGATGGTGGAGGGAGTGGGAC
TGTGAGGAATTTAATGGCAGGGTCTCCATTTTCAACTGGGGTTTTGATGG
CTGATGGGGTTTCCGTTCATTATCTTGGTTGTAGAGCCGCCGCAGCTGCT
GGAGATGTTGACGGCGATCAATCTTGTATGGTGCAGAGTGATAGTAATGT
AGCACGATCCGCTATTATACCTGGATGGTCGTCAGATTTGGTCAGTGAGT
CTTCATTGCCAAGCTCTCAAGATGAAAAACTTGATGAAATCAAGGATGCC
GAAATGATGCTGTGTCGTGTAGCTTCGCGGAGGGATATGGCTACACAAAT
GAGCCCGGACAACAGTAGCAGCCACTCATCTACTAGAGCGAGGTCTTCAT
TCGGCCACTCACCTCCCCCTATCCTTCCTCTTCCTGCTGTGGACAACAAT
GATCATCCTTCTAAACTGGACGTCAGGGAAGTGCAGATAGACAAACGAGC
CACTGTTACTAACCGGTCAAAAAGGCATGGGTCGAGAAGAATCAAGAAAG
GCGAGCCGGATTTTGAAGGCTTCTACCGAAACAGCGCCCCAACTTCTGCT
TTATCTCTGGATATCGCAGAGGCAGCAACAAGCATTTCAAAGTTGCAAAG
AGAGGAAGCAAAGATCAGTGCTTGGGAGAATCTGCAGAGGGCAAAAGCTG
AGGCAGCCATACGTAAACTAGAGATGAAATTAGAAAAGAAGAGATCAGCT
TCAATGGATAAGATCTTGAGGAAGCTGAGAACGGCTCAGGTGAAAGCTCA
AGAAATGAGGAGTTCCATATCAGGCAAAGAGGATGAACAGATTCCCAAGA
CTTCACCGAAGTTTACATTCTTCCATATCCGCATGAGTTTTCTCAGCAGT
TGCTTCACCTGCCATGGTTTCTAGTTTCTTGCAAATCTTATGTCCATATC
CTCAAATCTTTTCCATAAAGTATTAGCTTCCAATGGAGTATTTGTTTCCG
GATTTTTTTCGCTGCTGGTTTCTCGGCTTCCCTACTCTTCCATGTAAATT
ATCTTAAGATTTCTAGATTCGATGGTCCAGGAGACTGCAGATTTCAACTT
CTTGTTCTTAGTGGATGTGATTTTTTTTGGTTCTTTTTTAAAGGAAATGT
CATCTTTTATGCTTTGCAATGTCAACTAACTAGAATAGGTTAGCTTATAT
ATTTGCTTTACTGTCTGATAAGTTAGTGATGAAACATAAAAATACCAGCT
TAATGTATGACAGGGTATACCAACAATTCCATGCAAAATATTTGTAACTT
GCATACCATTGACGGTAAGTTTCAGATGGAAGTGTTTGGTAAAGATAGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR005516Remorin_C