g.barbadense_cottongen_reftransV1_0094656, g.barbadense_cottongen_reftransV1_0094656 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094656
Unique Nameg.barbadense_cottongen_reftransV1_0094656
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length1998
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
At10chromosomeg.barbadense_cottongen_reftransV1_0094656:1..1998 .
At10:56182100..56184321 -
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: M5Y2S9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023554mg PE=4 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 2.562e-101
Identity = 118/201 (58.71%), Postives = 156/201 (77.61%), Query Frame = -3
Query:  326 FVKRSISKHLPIHYKYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYK 928
            FVK S+     +  +YNK+ Q P+++FT +HK L ++GS WL KTSESCS+VAALIATVAFATSA++PGG+ + +G+PV +D PAF+ F I+SL+ALC SVTALVFFL I+TSR+E  D++  LP +L++GLT+LF SI A+LVSFC GH F L  +L++ A P+Y  TCLPV+ FALAQL LY+DL+R I   +PQRSYK
Sbjct:  431 FVKNSMPPRSSV--RYNKEGQMPQEVFTTSHKDLRQEGSNWLVKTSESCSVVAALIATVAFATSASVPGGLDDKTGSPVFKDMPAFNAFTISSLLALCLSVTALVFFLTIITSRYEAHDYSISLPRKLLLGLTSLFASIAAVLVSFCTGHIFLLDRQLRYVAYPLYAATCLPVTIFALAQLSLYYDLIRVIFSKVPQRSYK 629          

HSP 2 Score: 147.902 bits (372), Expect = 2.562e-101
Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = -2
Query: 1008 TPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRPWLIPGSALQMQWELKWY 1316
            TP LIAAKMG+ EMVE+IL+KFPV+I+D+D++ KNV LLAVENRQ H +  L++R+  +   + R+ D+ GNNALHLAAK G +RPWL PG+ALQMQWELKWY
Sbjct:  328 TPILIAAKMGVKEMVETILEKFPVAIEDVDSENKNVALLAVENRQPHVYSLLLDRKKEITR-LLRRVDNNGNNALHLAAKCGSHRPWLTPGAALQMQWELKWY 429          
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: V4VVE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019036mg PE=4 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 7.417e-101
Identity = 123/204 (60.29%), Postives = 157/204 (76.96%), Query Frame = -3
Query:  326 QFVKRSISKHLPIHY--KYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYK 931
            +FV+ S    +P H+  +YN++N++PK +FTETHK LV+ G  WLT TSESCS+VAALIATVAFATSAT+PGGVKE SG P LE++PAF+VF I+SL+ALCFSVTA+V FLAILTSR++E DF   LP +L++GLT+LF SI ++L             +LK+AA P+Y VTCLPV+ FA+AQ PLYFDL+ A  K +PQRSYK
Sbjct:  538 EFVRDS----MPFHFFVRYNEQNKSPKDVFTETHKELVQAGGQWLTNTSESCSVVAALIATVAFATSATVPGGVKEDSGEPTLENQPAFNVFAISSLVALCFSVTAVVMFLAILTSRYQEGDFRSDLPGKLLLGLTSLFVSIASML-------------KLKYAAFPVYAVTCLPVTLFAIAQFPLYFDLIWATFKKVPQRSYK 724          

HSP 2 Score: 145.591 bits (366), Expect = 7.417e-101
Identity = 67/105 (63.81%), Postives = 86/105 (81.90%), Query Frame = -2
Query: 1005 ETPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRPWLIPGSALQMQWELKWYK 1319
            ETP LIAAK GITE+VE IL  FPV+I D++++ KNV+LLAVENRQ H +Q L+ +   + E++FRK D QGN+ALHLAA  G+++PWLIPG+ALQMQWELKWY+
Sbjct:  435 ETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLL-KTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYE 538          
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: V4S5R7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004436mg PE=4 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.026e-100
Identity = 122/205 (59.51%), Postives = 163/205 (79.51%), Query Frame = -3
Query:  317 QFVKRSISKHLPIHYKYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYKEFT 931
            ++VK S+ ++  +  +YNK  QTPK++FTETHK LVK+GS WL KTSE+CS+VAALIATVAFA SAT+PGG+ E +G P+L +E AF +F I+SLI+LCFSVTAL+  LAILTSR++EKDFA  LP +L+IGLT+L  S+ ++ +SFCAGH+  ++D L+  ALP+Y  TCLP+++FAL QLPLY DL+ AI K +PQ SYK F+
Sbjct:  518 KYVKESMPQNFFV--RYNKNGQTPKELFTETHKRLVKEGSKWLIKTSEACSVVAALIATVAFAASATVPGGLNEDNGKPILLEEIAFRIFAISSLISLCFSVTALIVCLAILTSRYQEKDFAMALPRKLLIGLTSLHVSVVSVWISFCAGHYLVIRDMLRSMALPMYAATCLPMAYFALIQLPLYVDLMLAIFKKVPQPSYKVFS 720          

HSP 2 Score: 140.584 bits (353), Expect = 1.026e-100
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = -2
Query:  990 EKNVILKQKETETPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRP-WLIPGSALQMQWELKWYKVYVVE 1352
            EK    + +  ETP LIA K G+ E+VE ILD FPV+IQD DA+GKNV+LLAVE+RQTH ++ L+ ++  + E+ FRK D+QGN+ALH AA +  +RP  LIPG+ALQMQWE+KWYK YV E
Sbjct:  403 EKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKM-IMENAFRKLDNQGNSALHYAAMFENHRPSSLIPGAALQMQWEIKWYK-YVKE 522          
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: K7L3S4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.191e-100
Identity = 121/191 (63.35%), Postives = 149/191 (78.01%), Query Frame = -3
Query:  314 KYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYKEFTQ 886
            +YN K QT KQ+F  TH+ LV++G  WL+KTSESCSLVAAL+ATVAF TS  IPGG  E +G PVL  +PAF VF +ASL+ALC SVTALV FL+ILTSRF+EKD A  LP +L++G+T+L+TSI +ILVSFCAGHFF ++D +K +   IY VTCLPVSFF L QLPLY DL+ AI + +PQR YK F+ 
Sbjct:  507 RYNNKGQTAKQVFIITHQPLVREGRKWLSKTSESCSLVAALVATVAFTTSTAIPGGANEVTGVPVLSGQPAFKVFAVASLVALCSSVTALVLFLSILTSRFQEKDVAMDLPKKLLMGMTSLWTSIASILVSFCAGHFFIIEDGMKSSVYLIYAVTCLPVSFFVLVQLPLYLDLMLAIFRKVPQRVYKVFSH 697          

HSP 2 Score: 142.895 bits (359), Expect = 1.191e-100
Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = -2
Query: 1002 LKQKETETPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRPWLIPGSALQMQWELKWYKV 1337
            +++K + +P LIAAKMG+ EMVE +LD FPV+I D+D+D KNV+LLA+ENRQ   ++ L  R   + ES F   D+QGN+ALHLAA Y E+RPW +PG A+QMQWE KWYK+
Sbjct:  385 IEKKRSVSPILIAAKMGVNEMVEKVLDTFPVAIHDVDSDNKNVVLLAIENRQPRVYKLLAKRNL-VKESAFCHIDNQGNSALHLAAMYREHRPWRVPGDAMQMQWEYKWYKL 495          
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: A0A0B2P5U6_GLYSO (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Glycine soja GN=glysoja_009878 PE=4 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.361e-100
Identity = 121/191 (63.35%), Postives = 149/191 (78.01%), Query Frame = -3
Query:  314 KYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYKEFTQ 886
            +YN K QT KQ+F  TH+ LV++G  WL+KTSESCSLVAAL+ATVAF TS  IPGG  E +G PVL  +PAF VF +ASL+ALC SVTALV FL+ILTSRF+EKD A  LP +L++G+T+L+TSI +ILVSFCAGHFF ++D +K +   IY VTCLPVSFF L QLPLY DL+ AI + +PQR YK F+ 
Sbjct:  477 RYNNKGQTAKQVFIITHQPLVREGRKWLSKTSESCSLVAALVATVAFTTSTAIPGGANEVTGVPVLSGQPAFKVFAVASLVALCSSVTALVLFLSILTSRFQEKDVAMDLPKKLLMGMTSLWTSIASILVSFCAGHFFIIEDGMKSSVYLIYAVTCLPVSFFVLVQLPLYLDLMLAIFRKVPQRVYKVFSH 667          

HSP 2 Score: 142.895 bits (359), Expect = 1.361e-100
Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = -2
Query: 1002 LKQKETETPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRPWLIPGSALQMQWELKWYKV 1337
            +++K + +P LIAAKMG+ EMVE +LD FPV+I D+D+D KNV+LLA+ENRQ   ++ L  R   + ES F   D+QGN+ALHLAA Y E+RPW +PG A+QMQWE KWYK+
Sbjct:  355 IEKKRSVSPILIAAKMGVNEMVEKVLDTFPVAIHDVDSDNKNVVLLAIENRQPRVYKLLAKRNL-VKESAFCHIDNQGNSALHLAAMYREHRPWRVPGDAMQMQWEYKWYKL 465          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M5Y2S9_PRUPE2.562e-10158.71Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V4VVE3_9ROSI7.417e-10160.29Uncharacterized protein OS=Citrus clementina GN=CI... [more]
V4S5R7_9ROSI1.026e-10059.51Uncharacterized protein OS=Citrus clementina GN=CI... [more]
K7L3S4_SOYBN1.191e-10063.35Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2P5U6_GLYSO1.361e-10063.35Serine/threonine-protein phosphatase 6 regulatory ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 56..167
e-value: 3.5E-26
score: 91.1
NoneNo IPR availablePANTHERPTHR24177:SF30SUBFAMILY NOT NAMEDcoord: 16..217
NoneNo IPR availablePANTHERPTHR24177FAMILY NOT NAMEDcoord: 16..217
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 168..178
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 202..221
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 101..128
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..100
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 140..167
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 179..201
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 129..139
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.818
NoneNo IPR availableTMHMMTMhelixcoord: 107..129
NoneNo IPR availableTMHMMTMhelixcoord: 65..87
NoneNo IPR availableTMHMMTMhelixcoord: 142..164
NoneNo IPR availableTMHMMTMhelixcoord: 179..201

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094656 ID=g.barbadense_cottongen_reftransV1_0094656; Name=g.barbadense_cottongen_reftransV1_0094656; organism=Gossypium barbadense; type=contig; length=1998bp
GTAATGTGCCATGCAGTTTGCCAATTCCCCATGTTTGTGTGTCTGTGAAT
GTTGTCAGGTTCTAGAATTATTCGAGTTCTTTATTTTCTCTAAAATATAT
GTAAATGCTTCTATTAGATCCGGAGATCTGATATGAAAACATTTCTAAAT
ATATTAGGAAACTTCAAAAAGTTCGGTTTATTCGTATTGAATTCAATTTG
GTAACATTACAAGAAAGCAGTAGCATACATATCAAAATTTATTATACTAT
ATCTCTTAAGAAACACCCAATGAAGTTGATGATAAACATGAAAAATGCTA
AGCAATTTAGTTATTGAGTAAACTCCTTATAACTACGCTGTGGGATATCC
TTGATGATTGCCCGTAAAAGATCGAAGTAGAGGGGCAACTGTGCAAGTGC
AAAGAAGGAAACAGGCAAACATGTTACTATGTAAATAGGTAAAGCTGCAA
ACTTTAGCCTATCTTTAAGTTCGAAGAAATGGCCTGCACAAAATGAGACT
AGTATTGCAGTTATTGAAGTGAACAATGCTGTTAGGCCGATAATGAGTCT
CCAAGGCAATTTACAAGCAAAATCTTTCTCTTCAAATCGGGAAGTCAGGA
TTGCTAGGAAAAATACCAGGGCTGTCACGGAGAAGCAAAGGGCTATTAAG
GATGCAATGCAAAACACAGAGAATGCGGGCTCATCCTCAAGAACTGGTGT
GCCAGAGGTTTCCTTAACTCCACCTGGGATAGTTGCTGATGTTGCAAATG
CTACTGTGGCTATCAATGCTGCTACGAGTGAGCAAGATTCAGAGGTTTTC
GTGAGCCATGCGCTACCGTCTTTGACAAGCAATTTGTGTGTTTCCGTGAA
GATTTGCTTTGGGGTTTGATTCTTCTTGTTGTACTTGTAATGAATAGGCA
AATGCTTTGAAATGGATCGCTTGACAAACTGCAATACCGATGGAACTAAG
ATTAAAAAAAGGAAAGCAAAAGACAATTCAAAAATAGAGCTCTACGACAT
ATACCTTATACCACTTGAGCTCCCATTGCATTTGTAAAGCAGATCCTGGA
ATGAGCCAAGGACGATATTCTCCATATTTGGCAGCAAGGTGCAATGCATT
GTTCCCTTGATGATCCCACTTTCGGAAAATGCTTTCATGCAACGGGGTTT
CTCTGTTGATTAGGAACTGAAAAGTATGCGTTTGCCTATTCTCCACTGCT
AAAAGCAACACGTTTTTGCCATCAGCATCCAAGTCCTGAATAGAAACAGG
GAACTTGTCTAAAATACTTTCCACCATTTCTGTGATTCCCATCTTTGCTG
CTATCAAGAAAGGCGTCTCTGTCTCTTTTTGTTTAAGAATTACGTTCTTT
TCAAATGCCATTTTCACCGAATACTTTGAGCTCTTAGAATCCACCGACCC
TATTATCCTGTATTCTTTAAGAAAGCTCTCCATTGGTGCTACTGTGACTG
TCCCTTCCTTGATGGAGCAACCTGTTATGGGTTTACAACATCAATATGCA
TGGACAAAGAGCCAATACACTTAACTACATCAAATCCAACCCTCATTGTG
TTGGGTTCCAGCTGATAGGGATTTTTGGCCGAGGTTTGCATGTTGGTGTT
GTTGGAGACACGTACCTTTCCTCTTATCGGTCTCAGCCTCCTCACCTTGA
GCCTCCCCCGTAATGCGAGGGTCAAAATGAATGTCAGTCTCTCTTTCACT
AAATTTGTATGGACAAGCTGTCTTCACTAATTCATTCATGACTTGCAGTG
CAACTGTGTGTCTCTCTTTCTTTATTATGATTTTCTTTATTCTGTGAAAC
CCATGTCCCAAAACTATTAGCAGCAAATTCAGGAAAAACTTAAGAGATAG
GATAATCGAGGCATAATTGGGTGGAACATAGCGTTGCTTGAGATTGTATT
TTTCCTCTTCCTTGTCTTTTGATTCACCTTTATCTTCTAAAGATTACAAC
ATTAAAACAAAGGAAGCTTAAAGACAATTTTATGGTTATACACAAAGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR026961PGG_dom