g.barbadense_cottongen_reftransV1_0094656, g.barbadense_cottongen_reftransV1_0094656 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: M5Y2S9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023554mg PE=4 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 2.562e-101 Identity = 118/201 (58.71%), Postives = 156/201 (77.61%), Query Frame = -3 Query: 326 FVKRSISKHLPIHYKYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYK 928 FVK S+ + +YNK+ Q P+++FT +HK L ++GS WL KTSESCS+VAALIATVAFATSA++PGG+ + +G+PV +D PAF+ F I+SL+ALC SVTALVFFL I+TSR+E D++ LP +L++GLT+LF SI A+LVSFC GH F L +L++ A P+Y TCLPV+ FALAQL LY+DL+R I +PQRSYK Sbjct: 431 FVKNSMPPRSSV--RYNKEGQMPQEVFTTSHKDLRQEGSNWLVKTSESCSVVAALIATVAFATSASVPGGLDDKTGSPVFKDMPAFNAFTISSLLALCLSVTALVFFLTIITSRYEAHDYSISLPRKLLLGLTSLFASIAAVLVSFCTGHIFLLDRQLRYVAYPLYAATCLPVTIFALAQLSLYYDLIRVIFSKVPQRSYK 629 HSP 2 Score: 147.902 bits (372), Expect = 2.562e-101 Identity = 66/103 (64.08%), Postives = 84/103 (81.55%), Query Frame = -2 Query: 1008 TPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRPWLIPGSALQMQWELKWY 1316 TP LIAAKMG+ EMVE+IL+KFPV+I+D+D++ KNV LLAVENRQ H + L++R+ + + R+ D+ GNNALHLAAK G +RPWL PG+ALQMQWELKWY Sbjct: 328 TPILIAAKMGVKEMVETILEKFPVAIEDVDSENKNVALLAVENRQPHVYSLLLDRKKEITR-LLRRVDNNGNNALHLAAKCGSHRPWLTPGAALQMQWELKWY 429
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: V4VVE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019036mg PE=4 SV=1) HSP 1 Score: 251.906 bits (642), Expect = 7.417e-101 Identity = 123/204 (60.29%), Postives = 157/204 (76.96%), Query Frame = -3 Query: 326 QFVKRSISKHLPIHY--KYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYK 931 +FV+ S +P H+ +YN++N++PK +FTETHK LV+ G WLT TSESCS+VAALIATVAFATSAT+PGGVKE SG P LE++PAF+VF I+SL+ALCFSVTA+V FLAILTSR++E DF LP +L++GLT+LF SI ++L +LK+AA P+Y VTCLPV+ FA+AQ PLYFDL+ A K +PQRSYK Sbjct: 538 EFVRDS----MPFHFFVRYNEQNKSPKDVFTETHKELVQAGGQWLTNTSESCSVVAALIATVAFATSATVPGGVKEDSGEPTLENQPAFNVFAISSLVALCFSVTAVVMFLAILTSRYQEGDFRSDLPGKLLLGLTSLFVSIASML-------------KLKYAAFPVYAVTCLPVTLFAIAQFPLYFDLIWATFKKVPQRSYK 724 HSP 2 Score: 145.591 bits (366), Expect = 7.417e-101 Identity = 67/105 (63.81%), Postives = 86/105 (81.90%), Query Frame = -2 Query: 1005 ETPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRPWLIPGSALQMQWELKWYK 1319 ETP LIAAK GITE+VE IL FPV+I D++++ KNV+LLAVENRQ H +Q L+ + + E++FRK D QGN+ALHLAA G+++PWLIPG+ALQMQWELKWY+ Sbjct: 435 ETPILIAAKNGITEIVEKILKSFPVAILDMNSEKKNVMLLAVENRQRHVYQLLL-KTAIIQETVFRKVDDQGNSALHLAATLGDHKPWLIPGAALQMQWELKWYE 538
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: V4S5R7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004436mg PE=4 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 1.026e-100 Identity = 122/205 (59.51%), Postives = 163/205 (79.51%), Query Frame = -3 Query: 317 QFVKRSISKHLPIHYKYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYKEFT 931 ++VK S+ ++ + +YNK QTPK++FTETHK LVK+GS WL KTSE+CS+VAALIATVAFA SAT+PGG+ E +G P+L +E AF +F I+SLI+LCFSVTAL+ LAILTSR++EKDFA LP +L+IGLT+L S+ ++ +SFCAGH+ ++D L+ ALP+Y TCLP+++FAL QLPLY DL+ AI K +PQ SYK F+ Sbjct: 518 KYVKESMPQNFFV--RYNKNGQTPKELFTETHKRLVKEGSKWLIKTSEACSVVAALIATVAFAASATVPGGLNEDNGKPILLEEIAFRIFAISSLISLCFSVTALIVCLAILTSRYQEKDFAMALPRKLLIGLTSLHVSVVSVWISFCAGHYLVIRDMLRSMALPMYAATCLPMAYFALIQLPLYVDLMLAIFKKVPQPSYKVFS 720 HSP 2 Score: 140.584 bits (353), Expect = 1.026e-100 Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = -2 Query: 990 EKNVILKQKETETPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRP-WLIPGSALQMQWELKWYKVYVVE 1352 EK + + ETP LIA K G+ E+VE ILD FPV+IQD DA+GKNV+LLAVE+RQTH ++ L+ ++ + E+ FRK D+QGN+ALH AA + +RP LIPG+ALQMQWE+KWYK YV E Sbjct: 403 EKKNTQQSRRKETPLLIATKTGVLEIVEKILDAFPVAIQDEDANGKNVVLLAVEHRQTHIYELLLKKKM-IMENAFRKLDNQGNSALHYAAMFENHRPSSLIPGAALQMQWEIKWYK-YVKE 522
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: K7L3S4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 1.191e-100 Identity = 121/191 (63.35%), Postives = 149/191 (78.01%), Query Frame = -3 Query: 314 KYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYKEFTQ 886 +YN K QT KQ+F TH+ LV++G WL+KTSESCSLVAAL+ATVAF TS IPGG E +G PVL +PAF VF +ASL+ALC SVTALV FL+ILTSRF+EKD A LP +L++G+T+L+TSI +ILVSFCAGHFF ++D +K + IY VTCLPVSFF L QLPLY DL+ AI + +PQR YK F+ Sbjct: 507 RYNNKGQTAKQVFIITHQPLVREGRKWLSKTSESCSLVAALVATVAFTTSTAIPGGANEVTGVPVLSGQPAFKVFAVASLVALCSSVTALVLFLSILTSRFQEKDVAMDLPKKLLMGMTSLWTSIASILVSFCAGHFFIIEDGMKSSVYLIYAVTCLPVSFFVLVQLPLYLDLMLAIFRKVPQRVYKVFSH 697 HSP 2 Score: 142.895 bits (359), Expect = 1.191e-100 Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = -2 Query: 1002 LKQKETETPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRPWLIPGSALQMQWELKWYKV 1337 +++K + +P LIAAKMG+ EMVE +LD FPV+I D+D+D KNV+LLA+ENRQ ++ L R + ES F D+QGN+ALHLAA Y E+RPW +PG A+QMQWE KWYK+ Sbjct: 385 IEKKRSVSPILIAAKMGVNEMVEKVLDTFPVAIHDVDSDNKNVVLLAIENRQPRVYKLLAKRNL-VKESAFCHIDNQGNSALHLAAMYREHRPWRVPGDAMQMQWEYKWYKL 495
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Match: A0A0B2P5U6_GLYSO (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Glycine soja GN=glysoja_009878 PE=4 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 1.361e-100 Identity = 121/191 (63.35%), Postives = 149/191 (78.01%), Query Frame = -3 Query: 314 KYNKKNQTPKQIFTETHKLLVKDGSAWLTKTSESCSLVAALIATVAFATSATIPGGVKETSGTPVLEDEPAFSVFCIASLIALCFSVTALVFFLAILTSRFEEKDFACKLPWRLIIGLTALFTSITAILVSFCAGHFFELKDRLKFAALPIYIVTCLPVSFFALAQLPLYFDLLRAIIKDIPQRSYKEFTQ 886 +YN K QT KQ+F TH+ LV++G WL+KTSESCSLVAAL+ATVAF TS IPGG E +G PVL +PAF VF +ASL+ALC SVTALV FL+ILTSRF+EKD A LP +L++G+T+L+TSI +ILVSFCAGHFF ++D +K + IY VTCLPVSFF L QLPLY DL+ AI + +PQR YK F+ Sbjct: 477 RYNNKGQTAKQVFIITHQPLVREGRKWLSKTSESCSLVAALVATVAFTTSTAIPGGANEVTGVPVLSGQPAFKVFAVASLVALCSSVTALVLFLSILTSRFQEKDVAMDLPKKLLMGMTSLWTSIASILVSFCAGHFFIIEDGMKSSVYLIYAVTCLPVSFFVLVQLPLYLDLMLAIFRKVPQRVYKVFSH 667 HSP 2 Score: 142.895 bits (359), Expect = 1.361e-100 Identity = 64/112 (57.14%), Postives = 85/112 (75.89%), Query Frame = -2 Query: 1002 LKQKETETPFLIAAKMGITEMVESILDKFPVSIQDLDADGKNVLLLAVENRQTHTFQFLINRETPLHESIFRKWDHQGNNALHLAAKYGEYRPWLIPGSALQMQWELKWYKV 1337 +++K + +P LIAAKMG+ EMVE +LD FPV+I D+D+D KNV+LLA+ENRQ ++ L R + ES F D+QGN+ALHLAA Y E+RPW +PG A+QMQWE KWYK+ Sbjct: 355 IEKKRSVSPILIAAKMGVNEMVEKVLDTFPVAIHDVDSDNKNVVLLAIENRQPRVYKLLAKRNL-VKESAFCHIDNQGNSALHLAAMYREHRPWRVPGDAMQMQWEYKWYKL 465 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0094656 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094656 ID=g.barbadense_cottongen_reftransV1_0094656; Name=g.barbadense_cottongen_reftransV1_0094656; organism=Gossypium barbadense; type=contig; length=1998bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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