g.barbadense_cottongen_reftransV1_0094655, g.barbadense_cottongen_reftransV1_0094655 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy Swiss-Prot
Match: YCV6_SCHPO (Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.510e-23 Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = -1 Query: 799 RIRTIDAVIITHSHADAIGGLDDLRDWT-NNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQ-EEPFIVHDLQI--TPLPVWHG---------RGYRSLGFRFGDICYISDVSDIPEETYPLL 1170 +IR +DAVI+TH HADAI G+DDLR+WT +QP + IY+ ER ++V++++ Y+V+ G +V F++ ++PF + D+ I TPLPV HG + Y +GFR GD+ YISD + +P T L+ Sbjct: 88 KIRYLDAVILTHDHADAINGMDDLREWTLGFLQPSVKIYLTERTYKVIERSFPYMVNAKNATGGGSVPTFDFHVFSPDKPFKLDDIDISVTPLPVHHGVYFIEGKESQTYFCMGFRVGDMSYISDCNYVPPTTKKLM 224 HSP 2 Score: 63.929 bits (154), Expect = 1.882e-9 Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = -3 Query: 2186 SEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEP-GNINRRRNTSLLIHYGRPSGR--CNILIDAGKFFYHSALQWFPE 2419 S+++F+GTG S GIP V CLT C C + P G N R NTS+L+ SG NILID GK FY SAL+ F E Sbjct: 6 SKLLFMGTGCSSGIPNVCCLTLEKPTCRTCLASLTPEGRKNNRFNTSVLLQVDDGSGDRPKNILIDCGKHFYVSALKHFVE 86
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy Swiss-Prot
Match: LIPB_PORGI (Octanoyltransferase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=lipB PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.206e-10 Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = -1 Query: 790 RSLSKKDQWRNVFLIILWYICR---LSCIFVVVTSCICVRIRTIDAVIITHSHADAIGGLDDLRD--WTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNC 1278 RS + D+ L+I+ + + C + I ++DAV++TH H D +GGLDDLR W ++++Y + + ++ +Y+ + PG + KL + + PF V DL + PL + HGR LG++ G++ +++D+ DI E L +C Sbjct: 25 RSEDRHDKRTRTSLLIITDAGKRILIDCSPDFRQQALFAGIDSLDAVLLTHEHFDHVGGLDDLRTICWHR----ELAVYAEQNVLDSIRDRLHYVFRKNP-YPGTPLLKL-CEVKPDMPFQVADLTVEPLRIMHGR-LPILGYKIGEMAFLTDMKDIAAEEIECLKSC 185
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: K3ZUC9_SETIT (Uncharacterized protein OS=Setaria italica GN=Si030210m.g PE=4 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 1.461e-68 Identity = 107/127 (84.25%), Postives = 117/127 (92.13%), Query Frame = -1 Query: 787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167 +RT+DAVIITHSHADAIGGLD LRDWTNNVQP I IYVAERD+EVMK THYYL+DTSV+IPGAAVS LQFNII+EEPF VH+L++ PLPVWHG+GYRSLGFRF DICYISDVSDIPEETY LL NCE Sbjct: 171 LRTVDAVIITHSHADAIGGLDCLRDWTNNVQPSIPIYVAERDYEVMKMTHYYLIDTSVVIPGAAVSALQFNIIKEEPFTVHNLEVIPLPVWHGQGYRSLGFRFADICYISDVSDIPEETYKLLENCE 297 HSP 2 Score: 45.8246 bits (107), Expect = 1.461e-68 Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3 Query: 602 CKMLSQDALRPDRSSSTHFGLPRV 673 C++L DALRPDRSSSTHFGLPR Sbjct: 296 CELLIMDALRPDRSSSTHFGLPRA 319 HSP 3 Score: 31.9574 bits (71), Expect = 1.461e-68 Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 Query: 471 EEVRKIKPKRTLFTG 515 EEVRKIKPK+TLFTG Sbjct: 321 EEVRKIKPKKTLFTG 335 HSP 4 Score: 141.739 bits (356), Expect = 1.014e-32 Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = -3 Query: 2177 HSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2422 SE+IF+GTGTSEGIPRVSCLT P K C VC+KAAEPGN NRRRNTS+L+ + PSG NIL+DAGKFFYHSALQWFP FGL Sbjct: 90 QSELIFLGTGTSEGIPRVSCLTHPTKTCPVCTKAAEPGNPNRRRNTSILLRHATPSGTANILVDAGKFFYHSALQWFPAFGL 171 HSP 5 Score: 70.0922 bits (170), Expect = 2.526e-9 Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = -3 Query: 215 FYGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 340 + GMMHLMDHEKV++ L LMETEGLD+QLSYDGLRIPV L Sbjct: 332 LFTGMMHLMDHEKVNDDLARLMETEGLDIQLSYDGLRIPVRL 373
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: C4J9M0_MAIZE (Uncharacterized protein OS=Zea mays GN=Zm.21380 PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 3.021e-68 Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = -1 Query: 787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167 +RTID VIITHSHADAIGGLD LRDWTNNVQ I IYVAERD+EVMK THYYL+DTSV+IPGAAVS LQFNII+EEPF+VH+L++ PLPVWHG+GYRSLGFRFGD+CYISDVSDIPEETY LL NCE Sbjct: 172 LRTIDGVIITHSHADAIGGLDCLRDWTNNVQSSIPIYVAERDYEVMKMTHYYLIDTSVVIPGAAVSALQFNIIKEEPFMVHNLEVIPLPVWHGQGYRSLGFRFGDVCYISDVSDIPEETYKLLENCE 298 HSP 2 Score: 46.2098 bits (108), Expect = 3.021e-68 Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3 Query: 602 CKMLSQDALRPDRSSSTHFGLPRV 673 C++L DALRPDRSSSTHFGLPR Sbjct: 297 CELLIMDALRPDRSSSTHFGLPRA 320 HSP 3 Score: 31.9574 bits (71), Expect = 3.021e-68 Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 Query: 471 EEVRKIKPKRTLFTG 515 EEVRKIKPK+TLFTG Sbjct: 322 EEVRKIKPKKTLFTG 336 HSP 4 Score: 140.198 bits (352), Expect = 3.912e-32 Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = -3 Query: 2177 SSSATMDTRENLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2467 S S+T + + L SE+IF+GTGTSEGIPRVSCLT P K C VC+KAAEPGN NRRRNTS+L+ + PSG NI++DAGKFFYHSALQWFP FGL Sbjct: 79 SGSSTSEEGQQL---QSELIFLGTGTSEGIPRVSCLTHPTKICPVCTKAAEPGNPNRRRNTSILLRHATPSGTTNIVVDAGKFFYHSALQWFPTFGL 172 HSP 5 Score: 63.929 bits (154), Expect = 2.338e-7 Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = -3 Query: 215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337 + GMMHLMDHEKV+ L L+ T+GLD+QLSYDGLRIPV L Sbjct: 334 FTGMMHLMDHEKVNSDLARLIGTDGLDIQLSYDGLRIPVRL 374
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A059BUU2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03136 PE=4 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 3.113e-68 Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = -1 Query: 787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQP I IYVA RDFEVMKKTHYYLVDTS IIPGAAVS+LQFNI+QEEPF+V+DLQITPLPVWHG+GYRSLGFRFG +CYISDVS+IPEETYPLL +C+ Sbjct: 147 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPHIPIYVANRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIMQEEPFVVNDLQITPLPVWHGQGYRSLGFRFGKVCYISDVSEIPEETYPLLRDCD 273 HSP 2 Score: 151.754 bits (382), Expect = 8.212e-37 Identity = 84/147 (57.14%), Postives = 96/147 (65.31%), Query Frame = -3 Query: 2177 MVPFLGTVRSTPSLTSLAPYKRQISIRISPVSXXXXXXXXXXXFLQACLQSSSATMDTRENLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2617 M FLG VR PS LAPY R+ + VS R G P R +A L SS+ SEIIF+GTGTSEGIPRVSCLT+ KKC VCSKA PGN NRR NTS+LI Y P+G+CNILIDAGKFFY SAL+WFP +G+ Sbjct: 1 MAAFLGAVRCAPSAARLAPYGRRFRVSGPAVSLSRRGSSPLRLHSRASLNSSAEDAGGIGRGGESDSEIIFMGTGTSEGIPRVSCLTNSSKKCPVCSKAIVPGNKNRRLNTSILIRYPGPTGKCNILIDAGKFFYQSALRWFPAYGI 147
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: C5XAP6_SORBI (Putative uncharacterized protein Sb02g023000 OS=Sorghum bicolor GN=Sb02g023000 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 4.272e-68 Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = -1 Query: 787 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1167 +RTID VIITHSHADAIGGLD LRDWTNNVQ I IYVAERD+EVMK THYYL+DTSV+IPGAAVS LQFNII+EEPF+VH+L++ PLPVWHG+GYRSLGFRFGD+CYISDVSDIPEETY LL NCE Sbjct: 174 LRTIDGVIITHSHADAIGGLDCLRDWTNNVQSSIPIYVAERDYEVMKMTHYYLIDTSVVIPGAAVSALQFNIIKEEPFMVHNLEVIPLPVWHGQGYRSLGFRFGDVCYISDVSDIPEETYKLLENCE 300 HSP 2 Score: 45.8246 bits (107), Expect = 4.272e-68 Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3 Query: 602 CKMLSQDALRPDRSSSTHFGLPRV 673 C++L DALRPDRSSSTHFGLPR Sbjct: 299 CELLIMDALRPDRSSSTHFGLPRA 322 HSP 3 Score: 31.9574 bits (71), Expect = 4.272e-68 Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 Query: 471 EEVRKIKPKRTLFTG 515 EEVRKIKPK+TLFTG Sbjct: 324 EEVRKIKPKKTLFTG 338 HSP 4 Score: 140.969 bits (354), Expect = 1.810e-32 Identity = 63/82 (76.83%), Postives = 70/82 (85.37%), Query Frame = -3 Query: 2177 HSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKFFYHSALQWFPEFGL 2422 SE+IF+GTGTSEGIPRVSCLT P K C VCSKAAEPGN NRRRNTS+L+ + PSG NI++DAGKFFYHSALQWFP FGL Sbjct: 93 QSELIFLGTGTSEGIPRVSCLTHPTKTCPVCSKAAEPGNPNRRRNTSILLRHATPSGTTNIVVDAGKFFYHSALQWFPTFGL 174 HSP 5 Score: 67.0106 bits (162), Expect = 3.044e-8 Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = -3 Query: 215 YGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 337 + GMMHLMDHEKV+ L LMETEGLD+QLSYDGL IPV L Sbjct: 336 FTGMMHLMDHEKVNSDLARLMETEGLDIQLSYDGLSIPVRL 376
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Match: A0A0E0ERF7_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 7.873e-68 Identity = 105/128 (82.03%), Postives = 118/128 (92.19%), Query Frame = -1 Query: 787 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQPKISIYVAERDFEVMKKTHYYLVDTSVIIPGAAVSKLQFNIIQEEPFIVHDLQITPLPVWHGRGYRSLGFRFGDICYISDVSDIPEETYPLLGNCE 1170 ++RTIDAVIITHSHADAIGGLD LRDWTNNVQP I IYVAERD+EVMK THYYL+DTSV+IPGAAVS LQFNII+EEPF VH+L++ PLPVWHG+GYRSLGFRFG +CYISDVSDIP+ETY LL +CE Sbjct: 162 KLRTIDAVIITHSHADAIGGLDCLRDWTNNVQPTIPIYVAERDYEVMKMTHYYLIDTSVVIPGAAVSALQFNIIKEEPFTVHNLEVIPLPVWHGQGYRSLGFRFGRVCYISDVSDIPKETYKLLEDCE 289 HSP 2 Score: 46.2098 bits (108), Expect = 7.873e-68 Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = -3 Query: 602 CKMLSQDALRPDRSSSTHFGLPRV 673 C++L DALRPDRSSSTHFGLPR Sbjct: 288 CELLIMDALRPDRSSSTHFGLPRA 311 HSP 3 Score: 31.9574 bits (71), Expect = 7.873e-68 Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = -2 Query: 471 EEVRKIKPKRTLFTG 515 EEVRKIKPK+TLFTG Sbjct: 313 EEVRKIKPKKTLFTG 327 HSP 4 Score: 110.923 bits (276), Expect = 1.305e-22 Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = -3 Query: 2219 ACLQSSSATMDTRENLPAEHSEIIFIGTGTSEGIPRVSCLTDPVKKCLVCSKAAEPGNINRRRNTSLLIHYGRPSGRCNILIDAGKF 2479 A L + +T + + + SE+IF+GTGTSEGIPRVSCLT+P K C VC+KAAEPGN NRRRNTS+L+ + PSG NILIDAGK Sbjct: 77 ASLGGAVSTSRSEQEKQRQQSELIFLGTGTSEGIPRVSCLTNPSKTCAVCTKAAEPGNRNRRRNTSILLRHATPSGTANILIDAGKL 163 HSP 5 Score: 68.9366 bits (167), Expect = 5.499e-9 Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = -3 Query: 215 FYGGMMHLMDHEKVSEYLENLMETEGLDVQLSYDGLRIPVSL 340 + GMMHLMDHEKV+ L LMETEGLD+QLSYDGLR+PV L Sbjct: 324 LFTGMMHLMDHEKVNNELAKLMETEGLDIQLSYDGLRVPVWL 365 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 2
BLAST of g.barbadense_cottongen_reftransV1_0094655 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094655 ID=g.barbadense_cottongen_reftransV1_0094655; Name=g.barbadense_cottongen_reftransV1_0094655; organism=Gossypium barbadense; type=contig; length=2919bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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