g.barbadense_cottongen_reftransV1_0094527, g.barbadense_cottongen_reftransV1_0094527 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094527
Unique Name	g.barbadense_cottongen_reftransV1_0094527
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	3385

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: PKSB_ARATH (Type III polyketide synthase B OS=Arabidopsis thaliana GN=PKSB PE=1 SV=1)

HSP 1 Score: 560.066 bits (1442), Expect = 0.000e+0
Identity = 276/334 (82.63%), Postives = 303/334 (90.72%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLTV 2069
            KTTTVKTRYVVMSEEILK+YPELAIEG  TV QRLDICNDAVTEMAVEASR CIK WGR ISD+TH+VYVSSSEARLPGGDLYLAKGLGLSP+T RV+LYF+GCSGG AGLRVAKDIAENNPGSR+LLATSETTIIGFKPPS DRPYDLVG ALFGDGAGAMIIGSDP    E+PLFELHTA+QNFLP+TEKTIDG+LTE+GI+FKL+RELPQIIEDNVE+FC+KL+   GL  K+YN+MFWAVHPGGPAILNRIEKRL+L PEKLS SRRALMDYGNASSN+IVYVLEYM+EE     ++ +   EEE+EWGLILAFGPGVTFEGI+ARNL V
Sbjct:   63 KTTTVKTRYVVMSEEILKKYPELAIEGGSTVTQRLDICNDAVTEMAVEASRACIKNWGRSISDITHVVYVSSSEARLPGGDLYLAKGLGLSPDTHRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSVDRPYDLVGVALFGDGAGAMIIGSDPDPICEKPLFELHTAIQNFLPETEKTIDGRLTEQGINFKLSRELPQIIEDNVENFCKKLIGKAGLAHKNYNQMFWAVHPGGPAILNRIEKRLNLSPEKLSPSRRALMDYGNASSNSIVYVLEYMLEE----SKKVRNMNEEENEWGLILAFGPGVTFEGIIARNLDV 392

HSP 2 Score: 100.908 bits (250), Expect = 4.167e-21
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 2

Query:  749 MGSEEEPKEGFPKMVNPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPDLRKKLSRLCNTTN 946
            MGS +    G  K  NPGKATILALGKAFPHQLVMQE+LVDGYFK T CDDP+L++KL+RLC TT 
Sbjct:    1 MGSIDAAVLGSEKKSNPGKATILALGKAFPHQLVMQEYLVDGYFKTTKCDDPELKQKLTRLCKTTT 66

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: PKSC_ARATH (Type III polyketide synthase C OS=Arabidopsis thaliana GN=At4g00040 PE=2 SV=1)

HSP 1 Score: 453.751 bits (1166), Expect = 4.007e-147
Identity = 222/332 (66.87%), Postives = 262/332 (78.92%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNL 2063
            K+TTVKTRY VMS E L +YPELA EG PT+KQRL+I NDAV +MA EAS VCIK+WGR + D+THLVYVSSSE RLPGGDLYL+  LGLS E QRVMLYF+GC GG +GLRVAKDIAENNPGSR+LL TSETT++GF+PP+  RPY+LVGAALFGDGA A+IIG+DP  S E P  ELH AMQ FLP T+  IDG+L+EEGI+FKL R+LPQ IEDNVE FC+KL+A  G    + N +FWAVHPGGPAIL+ +E +L L PEKL  SRRALMDYGN SSNTI Y+++ + +E+       ++   E  EWGL LAFGPG+TFEG L RNL
Sbjct:   62 KSTTVKTRYTVMSRETLHKYPELATEGSPTIKQRLEIANDAVVQMAYEASLVCIKEWGRAVEDITHLVYVSSSEFRLPGGDLYLSAQLGLSNEVQRVMLYFLGCYGGLSGLRVAKDIAENNPGSRVLLTTSETTVLGFRPPNKARPYNLVGAALFGDGAAALIIGADPTES-ESPFMELHCAMQQFLPQTQGVIDGRLSEEGITFKLGRDLPQKIEDNVEEFCKKLVAKAGSGALELNDLFWAVHPGGPAILSGLETKLKLKPEKLECSRRALMDYGNVSSNTIFYIMDKVRDEL-------EKKGTEGEEWGLGLAFGPGITFEGFLMRNL 385

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: PKSA_ARATH (Type III polyketide synthase A OS=Arabidopsis thaliana GN=PKSA PE=1 SV=1)

HSP 1 Score: 438.728 bits (1127), Expect = 2.302e-141
Identity = 220/333 (66.07%), Postives = 264/333 (79.28%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLT 2066
            KTTTVKTRY V++ EIL +YPEL  EG PT+KQRL+I N+AV EMA+EAS  CIK+WGRP+ D+TH+VYVSSSE RLPGGDLYL+  LGL  +  RVMLYF+GC GG  GLRVAKDIAENNPGSR+LL TSETTI+GF+PP+  RPYDLVGAALFGDGA A+IIG+DP    E P  ELH A+Q FLP T+  I+G+LTEEGI+FKL R+LPQ IE+N+E FC+KLM   G    ++N MFWAVHPGGPAILNR+E +L L  EKL +SRRAL+DYGN SSNTI+YV+EYM +E+       K+  +   EWGL LAFGPG+TFEG+L R+LT
Sbjct:   69 KTTTVKTRYTVLTREILAKYPELTTEGSPTIKQRLEIANEAVVEMALEASLGCIKEWGRPVEDITHIVYVSSSEIRLPGGDLYLSAKLGLRNDVNRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLLTTSETTILGFRPPNKARPYDLVGAALFGDGAAAVIIGADP-RECEAPFMELHYAVQQFLPGTQNVIEGRLTEEGINFKLGRDLPQKIEENIEEFCKKLMGKAGDESMEFNDMFWAVHPGGPAILNRLETKLKLEKEKLESSRRALVDYGNVSSNTILYVMEYMRDEL-------KKKGDAAQEWGLGLAFGPGITFEGLLIRSLT 393

HSP 2 Score: 68.9366 bits (167), Expect = 1.037e-10
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 2

Query:  752 GSEEEPKEGFPKMVNPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPDLRKKLSRLCNTTN 946
            G E+   +   ++ N GKAT+LALGKAFP Q+V QE LV+G+ ++T CDD  +++KL  LC TT 
Sbjct:    8 GVEKLSSKSTRRVANAGKATLLALGKAFPSQVVPQENLVEGFLRDTKCDDAFIKEKLEHLCKTTT 72

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: CHSA_PETHY (Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.313e-84
Identity = 143/330 (43.33%), Postives = 213/330 (64.55%), Query Frame = 3

Query: 1074 TTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNL 2063
            + +K RY+ ++EEILK+ P +     P++  R DI    V ++  EA++  IK+WG+P S +THLV+ ++S   +PG D  L K LGL P  +R+M+Y  GC  G   LR+AKD+AENN G+R+L+  SE T + F+ P+      LVG ALFGDGAGA+IIGSDP+  +ERPLFEL +A Q  LPD+   IDG L E G++F L +++P +I  N+E   E+    +G++  D+N +FW  HPGGPAIL+++E +L L PEKL A+R  L DYGN SS  ++++L+ M +      ++   +  E  EWG++  FGPG+T E ++  ++
Sbjct:   63 SMIKKRYMHLTEEILKENPSMCEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGCDYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQALFGDGAGAIIIGSDPIPGVERPLFELVSAAQTLLPDSHGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLEEAFKPLGIS--DWNSLFWIAHPGGPAILDQVEIKLGLKPEKLKATRNVLSDYGNMSSACVLFILDEMRK---ASAKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.039e-83
Identity = 141/332 (42.47%), Postives = 213/332 (64.16%), Query Frame = 3

Query: 1074 TTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLTV 2069
            + +K RY+ ++EE+LK+ P +     P++  R DI    V ++  EA+   IK+WG+P S +THLV+ ++S   +PG D  L K LGL P  +R+M+Y  GC  G   LR+AKD+AENN G+R+L+  SE T + F+ P+      LVG ALFGDGA A+IIGSDP+  +E+PLFEL +A Q  LPD+E  IDG L E G++F L +++P +I  NVE    +    +G++  D+N +FW  HPGGPAIL+++E +L L PEKL A+R  L +YGN SS  ++++L+ M  +    K+   ++  E  EWG++  FGPG+T E ++  ++ +
Sbjct:   63 SQIKKRYMYLNEEVLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAIIIGSDPIPEVEKPLFELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAFKPLGIS--DWNSLFWIAHPGGPAILDQVEAKLSLKPEKLRATRHVLSEYGNMSSACVLFILDEMRRK---SKEDGLKTTGEGIEWGVLFGFGPGLTVETVVLHSVAI 389

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.196e-82
Identity = 140/330 (42.42%), Postives = 213/330 (64.55%), Query Frame = 3

Query: 1074 TTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNL 2063
            + +K RY+ ++EEILK+ P +     P++  R DI    V ++  EA++  IK+WG+P S +THLV+ ++S   +PG D  LAK LGL P  +R+M+Y  GC  G   LR+AKD+AENN G+R+L+  SE T + F+ PS      LVG ALFGDGA A+I+GSDP++ +ERPLFEL +A Q  +PD+E  IDG L E G++F L +++P +I  N+E    +    +G++  D+N +FW  HPGGPAIL+++E +L L  EKL A+R  L +YGN SS  ++++L+ M +      ++   +  E  EWG++  FGPG+T E ++  ++
Sbjct:   63 SMIKKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGCDYQLAKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAIIMGSDPIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGIS--DWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRK---ASTKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.208e-82
Identity = 139/331 (41.99%), Postives = 212/331 (64.05%), Query Frame = 3

Query: 1074 TTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLT 2066
            + +  RY+ ++EEILK+ P +     P++  R DI    V ++  EA++  IK+WG+P S +TH+V+ ++S   +PG D  L K LGL P  +R+M+Y  GC  G   +R+AKD+AENN G+R+L+  SE T + F  PS      +VG ALFGDGA AMIIGSDP+  +ERPLFEL +A Q  LPD+E  IDG L E G++F L +++P +I  N+E    +    +G++  D+N +FW  HPGGPAIL+++E +L L PEKL A+R+ L DYGN SS  ++++L+ M +      ++   +  E  +WG++  FGPG+T E ++  +++
Sbjct:   63 SMINKRYMHLTEEILKENPNICEYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVIRLAKDLAENNKGARVLVVCSEITAVTFSGPSDTHLDSMVGQALFGDGAAAMIIGSDPLPEVERPLFELVSAAQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFQPLGIS--DWNSIFWIAHPGGPAILDQVELKLGLKPEKLQATRQVLSDYGNMSSACVLFILDEMRK---ASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSVS 388

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.734e-82
Identity = 137/334 (41.02%), Postives = 214/334 (64.07%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLTV 2069
            + + ++ RY+ ++EE LK+ P +     P++  R DI    V ++  EA++  IK+WG+P S +THLV+ ++S   +PG D  L K LGL P  +R M+Y  GC  G   LR+AKD+AENN G+R+L+  SE T + F+ PS      LVG ALFGDGA A+I+GSDPV+ +ERPLF+L +A Q  LPD++  IDG L E G++F L +++P +I  N+E   ++    +G++  D+N +FW  HPGGPAIL+++E +L L PEKL ++R  L +YGN SS  ++++L+ M +      ++   S  E  +WG++  FGPG+T E ++  ++ +
Sbjct:   61 EKSMIRKRYMHLTEEFLKENPNMTAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRMAKDLAENNAGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAVIVGSDPVVGVERPLFQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPLGIS--DWNSVFWIAHPGGPAILDQVEAKLGLKPEKLRSTRHVLGEYGNMSSACVLFILDEMRKS---SAKEGMSSTGEGLDWGVLFGFGPGLTVETVVLHSVPI 389

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: CHSY_ANTMA (Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.857e-82
Identity = 137/330 (41.52%), Postives = 213/330 (64.55%), Query Frame = 3

Query: 1074 TTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNL 2063
            + +K RY+ ++EEILK+ P +     P++  R DI    V  +  EA++  IK+WG+P S +THLV+ ++S   +PG D  L K LGL P  +R M+Y  GC  G   LR+AKD+AENN G+R+L+  SE T + F+ P+      LVG ALFGDGA A+I+GSDPV+ +ERPLF++ TA Q  LPD+   IDG L E G++F L +++P +I  N+E   ++    +G++  D+N +FW  HPGGPAIL+++E++L L PEKL ++R+ L +YGN SS  ++++L+ M +      ++   +  E  +WG++  FGPG+T E ++  ++
Sbjct:   63 SNIKRRYMHLTEEILKENPAMCEYMAPSLDARQDIVVVEVPRLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRMAKDLAENNAGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVIVGSDPVVGVERPLFQIVTAAQTLLPDSHGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFDPLGIS--DWNSVFWIAHPGGPAILDQVEEKLGLKPEKLRSTRQVLSEYGNMSSACVLFILDEMRKS---SAKEGMSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 3.981e-82
Identity = 140/330 (42.42%), Postives = 212/330 (64.24%), Query Frame = 3

Query: 1074 TTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNL 2063
            + +K RY+ ++EEILK+ P +     P++  R DI    V ++  EA++  IK+WG+P S +THLV+ ++S   +PG D  LAK LGL P  +R+M+Y  GC  G   LR+AKD+AENN G+R+L+  SE T + F+ PS      LVG ALFGDGA A+I+GSDP++ +ERPLFEL +A Q  +PD+E  IDG L E G++F L +++P +I  N+E    +    +G++  D+N +FW  HPGGPAIL+++E +L L  EKL A+R  L +YGN SS  ++++L+ M +       +   +  E  EWG++  FGPG+T E ++  ++
Sbjct:   63 SMIKKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGCDYQLAKLLGLRPSVKRLMMYQQGCFVGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAIIMGSDPIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGIS--DWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRK---ASTNEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy TrEMBL
Match: V7AI43_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G039700g PE=3 SV=1)

HSP 1 Score: 562.762 bits (1449), Expect = 0.000e+0
Identity = 277/332 (83.43%), Postives = 300/332 (90.36%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNL 2063
            KTTTVKTRYVVMSEEIL +YPEL  EG PTVKQRL+ICN+AVTEMA+EA+  CIK WG  +SD+THLVYVSSSEARLPGGDLYLAKGLGLSP+TQR+MLYF GCSGG AGLRVAKDIAENNPGSR+LLATSETTIIGFKPPSADRPYDLVG ALFGDGAGAMIIGSDP+L  E+PLFELHTA+Q FLP TEK IDG+LTEEGISFKLARELPQIIEDNVE FCEKLM+ VG  +K+YNK+FWAVHPGGPAILNRIEKRLDL PEKLSASRRALMDYGNASSNTIVYVLEYMIEE L    + ++    +SEWGLILAFGPG+TFEGILARNL
Sbjct:   63 KTTTVKTRYVVMSEEILIKYPELVTEGTPTVKQRLEICNEAVTEMAIEAALGCIKNWGGSLSDITHLVYVSSSEARLPGGDLYLAKGLGLSPDTQRIMLYFAGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPILEYEKPLFELHTAVQEFLPHTEKKIDGRLTEEGISFKLARELPQIIEDNVEGFCEKLMSVVGFQNKEYNKVFWAVHPGGPAILNRIEKRLDLLPEKLSASRRALMDYGNASSNTIVYVLEYMIEEAL----KTRKDGRGDSEWGLILAFGPGITFEGILARNL 390

HSP 2 Score: 96.6709 bits (239), Expect = 7.998e-18
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 2

Query:  749 MGSEEEPKEGFPKMVNPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPDLRKKLSRLCNTTN 946
            MG E   K    K VNPGKATILALGKAFP QLVMQE+LVDGYF++TNCD+P+L++KL+RLC TT 
Sbjct:    1 MGEEGIWKGVTKKGVNPGKATILALGKAFPPQLVMQEYLVDGYFRSTNCDNPELKQKLTRLCKTTT 66

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy TrEMBL
Match: A0A078HAS3_BRANA (BnaA09g41780D protein OS=Brassica napus GN=BnaA09g41780D PE=3 SV=1)

HSP 1 Score: 561.992 bits (1447), Expect = 0.000e+0
Identity = 279/334 (83.53%), Postives = 304/334 (91.02%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLTV 2069
            KTTTVKTRYVVMSEEIL +YPELAIEG  TVKQRLDICNDAVTEMAVEASR CIKKWGR ISD+THLVYVSSSEARLPGGDLYLAKGLGLSPET  V+LYF+GCSGG AGLRVAKDIAENNPGSR+LLATSETTIIGFKPPSADRPYDLVG ALFGDGAGAMIIGSDP    E+PLFELHTA+QNFLPDTEKTIDG+LTEEGI+F L+RELP++IEDNVESFC+KL+   GLT KDYN+MFWAVHPGGPAILNR+EKRL+L PEKLS SRRALMDYGNASSN+IVYVLEYM+EE     ++ +  +E E+EWGLILAFGPGVTFEGI+ARNL V
Sbjct:   63 KTTTVKTRYVVMSEEILTKYPELAIEGGSTVKQRLDICNDAVTEMAVEASRACIKKWGRSISDITHLVYVSSSEARLPGGDLYLAKGLGLSPETHPVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSADRPYDLVGVALFGDGAGAMIIGSDPDPISEKPLFELHTAIQNFLPDTEKTIDGRLTEEGINFTLSRELPKLIEDNVESFCKKLIGKAGLTPKDYNQMFWAVHPGGPAILNRMEKRLNLSPEKLSPSRRALMDYGNASSNSIVYVLEYMLEE----SRKARNMKEVENEWGLILAFGPGVTFEGIVARNLDV 392

HSP 2 Score: 102.449 bits (254), Expect = 1.079e-19
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 2

Query:  749 MGSEEEPKEGFPKMVNPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPDLRKKLSRLCNTTN 946
            MGS +  + G  K  NPGKATILA+GKAFPHQLVMQE+LVDGYFK TNCDDP+L++KL+RLC TT 
Sbjct:    1 MGSIDATELGSEKKPNPGKATILAIGKAFPHQLVMQEYLVDGYFKTTNCDDPELKQKLTRLCKTTT 66

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy TrEMBL
Match: Q460X2_ARAHG (Chalcone synthase family protein OS=Arabidopsis halleri subsp. gemmifera GN=CHS4 PE=2 SV=1)

HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0
Identity = 277/334 (82.93%), Postives = 303/334 (90.72%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLTV 2069
            KTTTVKTRYVVMSEEILK+YPELAIEG  TV QRLDICNDAVTEMAVEASR CIK WGR IS++THLVYVSSSEARLPGGDLYLAKGLGLSP+T RV+LYF+GCSGG AGLRVAKDIAENNPGSR+LLATSETTIIGFKPPS DRPYDLVG ALFGDGAGAMIIGSDP    E+PLFELHTA+QNFLPDTEKTIDG+LTE+GI+FKLARELPQIIEDNVE+FC+KL+   GL  K+YN+MFWAVHPGGPAILNR+EKRL+L PEKLS SRRALMDYGNASSN+IVYVLEYM+EE     ++ +   EEE+EWGLILAFGPGVTFEGI+ARNL V
Sbjct:   63 KTTTVKTRYVVMSEEILKKYPELAIEGGSTVTQRLDICNDAVTEMAVEASRACIKNWGRSISEITHLVYVSSSEARLPGGDLYLAKGLGLSPDTHRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSVDRPYDLVGVALFGDGAGAMIIGSDPDPVCEKPLFELHTAIQNFLPDTEKTIDGRLTEQGINFKLARELPQIIEDNVENFCKKLIGKAGLAHKNYNQMFWAVHPGGPAILNRMEKRLNLSPEKLSPSRRALMDYGNASSNSIVYVLEYMLEE----SKKVRNMNEEENEWGLILAFGPGVTFEGIIARNLDV 392

HSP 2 Score: 100.523 bits (249), Expect = 4.649e-19
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 2

Query:  749 MGSEEEPKEGFPKMVNPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPDLRKKLSRLCNTTN 946
            MGS +    G  K  NPGKATILALGKAFPHQLVMQE+LVDGYFK T CDDP+L++KL+RLC TT 
Sbjct:    1 MGSIDAEVLGSEKKSNPGKATILALGKAFPHQLVMQEYLVDGYFKTTKCDDPELKQKLTRLCKTTT 66

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy TrEMBL
Match: A0A0D3DHR3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=LAP5 PE=3 SV=1)

HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 274/334 (82.04%), Postives = 300/334 (89.82%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLTV 2069
            KTTTVKTRYVVMSEEIL +YPE+AIEG  TVKQRLDICNDAVTEMAVEASR CIK WGR +SD+THLVYVSSSEARLPGGDL+LAKGLGLSPET RV+LYF+GCSGG AGLRVAKDIAENNPGSR+LLATSETTIIGFKPPS DRPYDLVG ALFGDGAGAMIIGSDP    E+PLFELHTA+QNFLPDTEKTIDG+LTE GI+F L+RELPQIIEDNVESFC+KL+   GL DKDYN+MFWAVHPGGPAILNR+EKRL+L PEKLS SRR+LMDYGNASSN+IVYVLEYM+EE     ++ +     E+EWGLILAFGPGVTFEGI+ARNL V
Sbjct:   63 KTTTVKTRYVVMSEEILTKYPEIAIEGGSTVKQRLDICNDAVTEMAVEASRSCIKNWGRSVSDITHLVYVSSSEARLPGGDLFLAKGLGLSPETHRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTIIGFKPPSKDRPYDLVGVALFGDGAGAMIIGSDPDPVSEKPLFELHTAIQNFLPDTEKTIDGRLTETGINFTLSRELPQIIEDNVESFCKKLIGKAGLADKDYNQMFWAVHPGGPAILNRMEKRLNLSPEKLSPSRRSLMDYGNASSNSIVYVLEYMLEE----SRKSRSMSGSENEWGLILAFGPGVTFEGIVARNLDV 392

HSP 2 Score: 100.523 bits (249), Expect = 4.143e-19
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 2

Query:  749 MGSEEEPKEGFPKMVNPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPDLRKKLSRLCNTTN 946
            MGS +  +    K  NPGKATILA+GKAFPHQLVMQE+LVDGYFK TNCDDP+L++KL+RLC TT 
Sbjct:    1 MGSIDATELASEKKPNPGKATILAIGKAFPHQLVMQEYLVDGYFKTTNCDDPELKQKLTRLCKTTT 66

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy TrEMBL
Match: A0A059AP86_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01371 PE=3 SV=1)

HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 272/334 (81.44%), Postives = 310/334 (92.81%), Query Frame = 3

Query: 1068 KTTTVKTRYVVMSEEILKQYPELAIEGLPTVKQRLDICNDAVTEMAVEASRVCIKKWGRPISDLTHLVYVSSSEARLPGGDLYLAKGLGLSPETQRVMLYFMGCSGGAAGLRVAKDIAENNPGSRILLATSETTIIGFKPPSADRPYDLVGAALFGDGAGAMIIGSDPVLSIERPLFELHTAMQNFLPDTEKTIDGKLTEEGISFKLARELPQIIEDNVESFCEKLMATVGLTDKDYNKMFWAVHPGGPAILNRIEKRLDLFPEKLSASRRALMDYGNASSNTIVYVLEYMIEEILXXXXXXXXXXXXXXXWGLILAFGPGVTFEGILARNLTV 2069
            KTTTVKTRYVVMSEEIL++YPELA+EGLPTVKQRLDICN+AVTEMA++AS+ CIKKWGRP SD+THLVYVSSSEARLPGGDLYLAKG+ LSPET+RV+LYF+GCSGG AGLRVAKDIAENNPGSRILLATSETTIIG+KPPSA+RPYDLVG ALFGDGAGAMIIG+DP LSIE+PLFEL+TA+Q+FLPDTEK IDG+LTEEGISFKLARELPQIIEDN+E FC KLM  +GL++KDYN++FWAVHPGGPAILNR+EKRLDL P+KL ASR+AL DYGNASSNTIVYVL+YM+EE +    + K+  + + E+GLILAFGPGVTFEGILARNLT+
Sbjct:   64 KTTTVKTRYVVMSEEILEKYPELAMEGLPTVKQRLDICNEAVTEMAIKASQDCIKKWGRPASDITHLVYVSSSEARLPGGDLYLAKGIKLSPETRRVLLYFVGCSGGVAGLRVAKDIAENNPGSRILLATSETTIIGYKPPSAERPYDLVGVALFGDGAGAMIIGADPDLSIEKPLFELNTAIQHFLPDTEKIIDGRLTEEGISFKLARELPQIIEDNIEGFCSKLMEPIGLSNKDYNRIFWAVHPGGPAILNRLEKRLDLLPDKLRASRQALKDYGNASSNTIVYVLDYMLEESM----KMKKDDQSQDEFGLILAFGPGVTFEGILARNLTI 393

HSP 2 Score: 95.5153 bits (236), Expect = 2.018e-17
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 2

Query:  785 KMVNPGKATILALGKAFPHQLVMQEFLVDGYFKNTNCDDPDLRKKLSRLCNTTN 946
            K    GKATILALGKAFP+QLVMQEFLVDGYF+NTNCDDPDL++KL+RLC TT 
Sbjct:   14 KKAGRGKATILALGKAFPNQLVMQEFLVDGYFRNTNCDDPDLKQKLTRLCKTTT 67

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
PKSB_ARATH	4.167e-21	82.63	Type III polyketide synthase B OS=Arabidopsis thal...	[more]
PKSC_ARATH	4.007e-147	66.87	Type III polyketide synthase C OS=Arabidopsis thal...	[more]
PKSA_ARATH	2.302e-141	66.07	Type III polyketide synthase A OS=Arabidopsis thal...	[more]
CHSA_PETHY	3.313e-84	43.33	Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=...	[more]
CHSY_HYPAN	3.039e-83	42.47	Chalcone synthase OS=Hypericum androsaemum PE=1 SV...	[more]
CHSB_SOLTU	1.196e-82	42.42	Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B...	[more]
CHS2_SOLTU	1.208e-82	41.99	Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P...	[more]
CHSY_PERFR	1.734e-82	41.02	Chalcone synthase OS=Perilla frutescens GN=CHS PE=...	[more]
CHSY_ANTMA	1.857e-82	41.52	Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3...	[more]
CHSA_SOLTU	3.981e-82	42.42	Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094527 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V7AI43_PHAVU	7.998e-18	83.43	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
A0A078HAS3_BRANA	1.079e-19	83.53	BnaA09g41780D protein OS=Brassica napus GN=BnaA09g...	[more]
Q460X2_ARAHG	4.649e-19	82.93	Chalcone synthase family protein OS=Arabidopsis ha...	[more]
A0A0D3DHR3_BRAOL	4.143e-19	82.04	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
A0A059AP86_EUCGR	2.018e-17	81.44	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 291..311
None	No IPR available	PANTHER	PTHR11877	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	coord: 4..337
None	No IPR available	PANTHER	PTHR11877:SF25	SUBFAMILY NOT NAMED	coord: 4..337
IPR011141	Polyketide synthase, type III	PIRSF	PIRSF000451	PKS_III	coord: 2..337 e-value: 1.0E-107 score: 357.9
IPR016039	Thiolase-like	GENE3D	3.40.47.10		coord: 4..177 e-value: 2.2E-61 score: 206.7
IPR016039	Thiolase-like	GENE3D	3.40.47.10		coord: 179..333 e-value: 3.0E-48 score: 162.6
IPR016039	Thiolase-like	SUPERFAMILY	53901	Thiolase-like	coord: 5..172
IPR016039	Thiolase-like	SUPERFAMILY	53901	Thiolase-like	coord: 178..333
IPR012328	Chalcone/stilbene synthase, C-terminal	PFAM	PF02797	Chal_sti_synt_C	coord: 181..335 e-value: 1.7E-61 score: 206.5
IPR001099	Chalcone/stilbene synthase, N-terminal	PFAM	PF00195	Chal_sti_synt_N	coord: 4..171 e-value: 1.2E-79 score: 266.7

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094527 ID=g.barbadense_cottongen_reftransV1_0094527; Name=g.barbadense_cottongen_reftransV1_0094527; organism=Gossypium barbadense; type=contig; length=3385bp
GAAGATTTCAGCTTAAAGTTATTCATTTGTATGCTTAGCTTTTGTGTTTT
TAGTTTTGAATCCAACACGAATCCTTAATTAAAAAGAAAAAATATGAAAC
TTGAACTCAAGTCAAGGCTGACGGAGAATATGTTTGATATAAGGTAACGG
TACCCGGGGGGTGACGATCAAATCTACATGCAGTGATGTGGGGAAGACGA
ACTAAATCCTGTCATCACTGCATTTTGTTATTTTATTGTTCTTTTCCTCA
TAGGCATTCTTTGACAGATCAACCAACACTGTAAAAGCACTGGAGTAGAT
TGTAGAATATCTTGGCAAATGATTCAAGCCCGGCAGGTTTGTTTTTCTTT
ATCGGCAAAACTCCACCAAATAAATTAAGGACTTTGGGTACATATTTACA
TAGCAATTGACATATCCTACCATGCTATCAATACAGTAAAATGCAAATTT
AAACCTCGAATCAAACCCCAACCAACGCTTGTTAAAATGAACTGCATGAA
GTTCTTACTTCTCAACGACTCTTTCTCAATATAATAATAATGACACCTTT
CTCATTTTTCTTAATAGGAATGAGTAATCCACAACTCCCTTTAAGCTTGC
TCTAAAAAATTGTGCTTGCAGAAGCACCGAAAATATATATATAAATATAT
ATAGAGAGTAGCATACCATCAATACTCCTTTGCAGGTAAAACAGTTCCTA
TACAACCTCCCGAGGGAGTAAATTCAGTAACGTTTCAGGGAAGAAAATAT
GGGGAGTGAAGAGGAACCAAAAGAAGGTTTCCCGAAGATGGTGAACCCTG
GGAAAGCCACAATTCTGGCTCTGGGAAAGGCTTTCCCTCACCAGCTTGTC
ATGCAAGAATTTCTGGTTGATGGGTATTTTAAGAACACCAACTGCGATGA
CCCAGATCTCAGGAAAAAGCTAAGCCGACTCTGTAACACTACCAACTTCC
ACCTCTGATTTATTTTGCTTGCTATATTGCTAGTCTCCCCTCTCCCTTCT
TCCTTTTTTCAGTCTCAACTTCAACAGTTATTTAACATATTTCCCTTCAT
TTTGGCTCTTGGCAGGCAAGACAACTACTGTTAAAACAAGGTATGTGGTC
ATGTCAGAAGAAATCCTGAAGCAGTATCCAGAGCTTGCCATTGAGGGACT
CCCCACTGTGAAGCAACGATTGGATATCTGTAACGATGCTGTCACGGAGA
TGGCTGTTGAAGCCTCACGAGTTTGTATCAAAAAATGGGGACGGCCTATA
TCAGACTTAACCCACTTAGTCTATGTTTCCTCGAGTGAAGCTCGGCTGCC
TGGTGGTGACCTTTACTTGGCCAAAGGACTTGGACTCAGCCCTGAGACGC
AACGTGTGATGCTCTATTTCATGGGCTGCTCTGGGGGTGCAGCTGGCCTT
CGTGTAGCAAAAGACATTGCCGAAAACAATCCCGGAAGTCGGATCTTACT
AGCTACTTCTGAAACTACCATTATTGGTTTCAAACCTCCAAGTGCAGATA
GACCATATGATCTGGTTGGTGCAGCTCTTTTTGGCGATGGTGCTGGAGCT
ATGATCATTGGCTCTGATCCAGTTTTGAGCATTGAGAGACCTCTCTTTGA
GCTTCACACTGCAATGCAGAATTTCTTGCCTGATACTGAGAAGACGATTG
ATGGGAAACTTACAGAAGAGGGGATTAGTTTCAAGCTTGCAAGGGAGCTT
CCTCAGATAATTGAAGATAACGTTGAAAGTTTCTGTGAGAAGTTGATGGC
AACCGTTGGATTGACTGACAAGGACTACAACAAGATGTTCTGGGCTGTTC
ATCCTGGTGGACCTGCAATCTTGAACAGAATAGAAAAACGACTAGATTTG
TTTCCAGAGAAACTAAGTGCCAGTAGAAGAGCGTTGATGGATTATGGAAA
TGCTAGCAGTAACACAATTGTGTATGTGTTGGAATACATGATAGAAGAGA
TCTTGAAGAAGAAGCAGCAGAAGAAAGAGAGCCAAGAAGAAGAGAGTGAA
TGGGGATTGATTTTAGCTTTTGGACCTGGGGTTACCTTCGAGGGTATTCT
TGCAAGAAACCTAACAGTATAAGAATAATGTCTTACAATTTCAAAGAAGT
TGGATCTCCTATTATATAATCATAGTGAAAATCAATTATCATGCATGCAA
AAGGAGACCTTATGCATTTCATGTTTCATAAAGAATCTACGAAACTGAAT
ACTCTAAATCTATACGATTATTATTTCTAGTATTCTGTCATTTGATTCTC
TAAAAACTTAAGCCAAACTGATCTTTTTACATGCAATCTTGTAAACAGGT
GGGAAAGTGAATTCTCAATGTCTCCAAAATATGAAGGTTGATAATCATCT
AAAGCCAGTTTCAGTCAAAGTATATTTTGGAACTGTAAGCTAGAACTTCT
ATTCATTTCCATCCAGACCTGTTAGATTATTACTTCAAATTAAAAATTGT
ACGCTAGCTGAGAGCCAATGCATATCATCACATCTAGGAACAGTCTACAA
TAATTAACTTCATATAAGCAAAAGATTAGCATTTGACATAAAAAATTAAT
CCATCTACGAAATGTTTTCAATATATATCCACCCAAAGTTTCTGCACCCC
GAAATTTACAAACAATCCGCTAATTTCCAGTCATAAGAAACATGTCGAGA
GCAAAAACCAGAACTTGAACTAGGATGCCTAGTCACATTTTTAACCGAGT
AATACTTTTTTCGGCAAACAAGCTCATCGATCAAAGCAAAACAGAATCTT
CACTTATACTACTCCGGAGGGAAGACGGAGAACAAGCTGCCCTCCAAAGA
CACTCTTAATATAATAGTAACAGAAGTCTGCTAAAATAAAAGTTTGAACA
ATTTCTGATATAAGAACCATAGAAGGCCACAATCCATAACCCAGGGCTAC
CAGCAAGCGTCCTCGGCTGTCTAAAACCTGTTGAAAGCAGTAGAGAATGA
ATTAACATCTTAGAACAATCACACTCATAATGACTCAAAAAAATGCTTCT
CGAACCAGCATCATACAGAAGGTTTCCCTTCCACACAAAAACACTTATGT
TGACACAGGAGGCTAATTAAAATGGCATCAACTAACATCTAGAACCAACA
ACCACACTCACACAATAAGCATTCAATTCAACCTTCAGGATCATTAATCA
TGCAGGCTGAAGCTATCTTTCTTTTTCCTAAGTAGATAAATTTTACAATA
AACAGACTAGTATCCACTTAATGCACAGACTGGGTCTCACTTTCAAAATA
GCTAGTGTTAATACATGACTAACGGAAAACCAATCATGTTCAACTTAACG
TCACAAGATCAAACCTGGAGAACCCAGTGAGCACAGCTGAGGAACCTTGC
AACACCCAACGCAAACACATAATGAGCTGTAAAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR011141	Polyketide_synthase_type-III
IPR016039	Thiolase-like
IPR012328	Chalcone/stilbene_synt_C
IPR001099	Chalcone/stilbene_synt_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009058	biosynthetic process
GO:0008152	metabolic process

Search form

g.barbadense_cottongen_reftransV1_0094527, g.barbadense_cottongen_reftransV1_0094527 (contig) Gossypium barbadense

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