g.barbadense_cottongen_reftransV1_0094274, g.barbadense_cottongen_reftransV1_0094274 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RBP1_RAT (RalA-binding protein 1 OS=Rattus norvegicus GN=Ralbp1 PE=1 SV=3) HSP 1 Score: 60.8474 bits (146), Expect = 4.458e-8 Identity = 40/152 (26.32%), Postives = 76/152 (50.00%), Query Frame = 1 Query: 1378 VFGVPIEVTVQRQQAIKPI--PLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSA--RSS----IHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809 +FG P V+R I P + C DY+ G+ + +++ G K +++L +AY+++ + ++ E P VA+L K Y+ LPE L T EL + A R++ + + +L+ LP N++ L ++ + V K + K+ + Sbjct: 189 IFGAPFADAVERTMMYDGIRLPAVFRECVDYMEKHGMKCEGIYRVSGIKSKVDELKAAYDREESPNL-EEYEPNTVASLLKQYLRDLPENLLTKELMPRFEEACGRTTEVEKVQEFQRLLRELPEYNHLLLSWLIVHMDHVIAKELETKMNI 339
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: 3BP1_HUMAN (SH3 domain-binding protein 1 OS=Homo sapiens GN=SH3BP1 PE=1 SV=3) HSP 1 Score: 60.4622 bits (145), Expect = 7.278e-8 Identity = 40/148 (27.03%), Postives = 72/148 (48.65%), Query Frame = 1 Query: 1378 VFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDE------IKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803 V+GV + +Q + + I L + C L+ G+ + LF+ V+++L D ++ +P VA K Y+ LPEPL TF+LYD+ +K + + A++ V LP N L ++ L R++++ +NK+ Sbjct: 273 VYGVSLATHLQ--ELGREIALPIEACVMMLLSEGMKEEGLFRLAAGASVLKRLKQTMASDPHSLEEFCSDPHAVAGALKSYLRELPEPLMTFDLYDDWMRAASLKEPGARLQALQEVCSRLPPENLSNLRYLMKFLARLAEEQEVNKM 418
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: BCR_MOUSE (Breakpoint cluster region protein OS=Mus musculus GN=Bcr PE=1 SV=3) HSP 1 Score: 60.4622 bits (145), Expect = 7.326e-8 Identity = 47/157 (29.94%), Postives = 79/157 (50.32%), Query Frame = 1 Query: 1372 TDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALA---KYYIASLPEPLTTFELYDEIKS--------ARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809 T VFGV I V +R+++ +P I+ +C + + G+ +++ G I+ L +A++ + N + ++ +DV A+A K Y LPEPL T E Y A+ S M N+L LP N +T F+ L RV++K +NK+ + Sbjct: 1048 TGVFGVKIAVVTKRERS--KVPYIVRQCVEEIERRGMEEVGIYRVSGVATDIQALKAAFDVN-NKDVSVMMSEMDVNAIAGTLKLYFRELPEPLFTDEFYPNFAEGIALSDPVAKES--CMLNLLLSLPEANLLTFLFLLDHLKRVAEKETVNKMSL 1199
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG22_MOUSE (Rho GTPase-activating protein 22 OS=Mus musculus GN=Arhgap22 PE=1 SV=2) HSP 1 Score: 60.077 bits (144), Expect = 8.209e-8 Identity = 43/175 (24.57%), Postives = 76/175 (43.43%), Query Frame = 1 Query: 1339 DIERWQKGVA-------STDVFGVPIEVTVQRQQAIKP--IPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKS---------ARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809 D+E W + + +FG +E TV ++ P PL++ +C D++ G++ + LF+ G ++ L +++ + VA+L K Y+ LPEP+ F Y++ S ++ + V LP NY L +I L V S +NK+ V Sbjct: 138 DMEDWVQAIRRVIWAPLGRGIFGQRLEDTVHHERKFGPRLAPLLVEQCVDFIRERGLSEEGLFRMPGQANLVRDLQDSFDCGEKPLFDSTTDVHTVASLLKLYLRELPEPVIPFARYEDFLSCAQLLTKDEGEGTVELAKQV-SNLPQANYNLLRYICKFLDEVQAHSDVNKMSV 311
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG44_MOUSE (Rho GTPase-activating protein 44 OS=Mus musculus GN=Arhgap44 PE=1 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 9.496e-8 Identity = 43/172 (25.00%), Postives = 81/172 (47.09%), Query Frame = 1 Query: 1324 KTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYN------QDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDE------IKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803 + +L I+ Q+ FG P+E + + + I + C L+ G+ + LF+ +++L +A + Q+++A +P +A K Y+ LPEPL TFELYDE I+ + A+ N + LP N+ ++++ L ++S+ +NK+ Sbjct: 234 QAVLPQIKAQQEAWVEKPSFGKPLEEHLMI--SGREIAFPIEACVTMLLECGMQEEGLFRVAPSASKLKKLKAALDCCVVDVQEYSA------DPHAIAGALKSYLRELPEPLMTFELYDEWIQASNIQEQDKRLQALWNACEKLPKANHNNIKYLIKFLSKLSEYQDVNKM 397
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: V7AJZ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G215200g PE=4 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 1.377e-82 Identity = 136/170 (80.00%), Postives = 153/170 (90.00%), Query Frame = 1 Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803 +VAK TAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQ KPIP ILV CADYLI+SG+NS YLFK+EG+K+VI+QLVS YNQD AS+PEG NP+DVAAL KYY+ASLPEPLTT ELY+EI+ ARSSI++ RN+LK L SVNYMTLEFITALLLRVSQKS+LNK+ Sbjct: 108 EVAKITAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQDYCKPIPQILVNCADYLIVSGLNSPYLFKSEGNKRVIQQLVSLYNQDSTASVPEGTNPVDVAALVKYYLASLPEPLTTLELYNEIRGARSSIYSTRNILKRLSSVNYMTLEFITALLLRVSQKSLLNKM 277 HSP 2 Score: 164.081 bits (414), Expect = 2.928e-40 Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 1 Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517 MDAR+LA+EMAPVIMWQK+ +PE YR+YW+ KSPS+ S+D+ +AWDML DDGE +DASS IPLDDG PVDFGAIEVIQ L+E HN IFTDANETVW+ Sbjct: 277 MDARTLAIEMAPVIMWQKESRPEFYRQYWNQMSKSPSEKSVDTPLDNTAWDMLADDGEAIDASSPIPLDDGTPVDFGAIEVIQLLVEHHNAIFTDANETVWK 378 HSP 3 Score: 153.295 bits (386), Expect = 1.562e-36 Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 3 Query: 324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617 MPS ++ QWQ+KA GF SSSGVKLKEA ++AGTFVGEV KD K NV++VA RVGSMVK+RWA L+QP+TRHAVQ+ LISAAATTGT LR+G +GTKD+ Sbjct: 1 MPSIMSPQWQDKAAGFLSSSGVKLKEAKESAGTFVGEVTKDTKSNVSEVAGRVGSMVKSRWALLQQPSTRHAVQDRLISAAATTGTLLRRGFSGTKDK 98
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: C6T8Q7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 1.720e-82 Identity = 135/170 (79.41%), Postives = 152/170 (89.41%), Query Frame = 1 Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803 +VAK TAQKSKTILTDIERWQKG+ASTD+FGVPIEVT QRQ KPIP ILV+C DYLI+SG+NS LFK+EGDKKVI QLVS YNQD AS+PEG NP+DVAAL KYY+ASLPEPLTT ELY+EI+SARSSI++MRN+LK L SVNYMTLEFITALLLRVSQKS+LNK+ Sbjct: 108 EVAKITAQKSKTILTDIERWQKGIASTDLFGVPIEVTAQRQDCSKPIPQILVKCGDYLIVSGLNSPNLFKSEGDKKVIHQLVSLYNQDSTASVPEGTNPVDVAALVKYYLASLPEPLTTLELYNEIRSARSSIYSMRNILKRLSSVNYMTLEFITALLLRVSQKSLLNKM 277 HSP 2 Score: 164.466 bits (415), Expect = 1.854e-40 Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 1 Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTP-TYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517 MDARSLAMEMAPVIMWQK+R+PE Y +YW+ KS S ++D TP +Y+AWDML DDGE DASS IPLDDG PVDFGAIEV+Q L E HN IFTDANETVW+ Sbjct: 277 MDARSLAMEMAPVIMWQKERRPEFYHQYWNQVSKSLSNKTVDPTPGSYTAWDMLADDGEATDASSPIPLDDGTPVDFGAIEVVQLLTEHHNAIFTDANETVWK 379 HSP 3 Score: 152.91 bits (385), Expect = 1.921e-36 Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 3 Query: 324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617 MPS ++ QWQ+KA GFFSSSGVKLKEA ++AGTFVGEV KD K NV +VA RVGSMVK+RWA L+QP+TRHAVQ+ ISAAATTGT LR+G +GTKD+ Sbjct: 1 MPSIMSPQWQDKAAGFFSSSGVKLKEAKESAGTFVGEVTKDTKSNVAEVAGRVGSMVKSRWALLQQPSTRHAVQDRFISAAATTGTLLRRGFSGTKDK 98
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: D7MV30_ARALL (Small G protein family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496313 PE=4 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 3.071e-82 Identity = 135/170 (79.41%), Postives = 155/170 (91.18%), Query Frame = 1 Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803 + AKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQRQ++ +PIPLIL++CADYLIL+G+NS LFKAEGDKK+I+QLVSAYNQD +ASIPEGVNP+DVAAL KYY+ASLP PLTTFELY+EIK ARSSIH MR L+ L +VNY TLEFITALLLRVSQKS+LNK+ Sbjct: 108 EAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILIKCADYLILTGLNSPNLFKAEGDKKLIQQLVSAYNQDPSASIPEGVNPVDVAALMKYYLASLPTPLTTFELYNEIKDARSSIHRMRKSLQKLSNVNYNTLEFITALLLRVSQKSLLNKM 277 HSP 2 Score: 158.688 bits (400), Expect = 2.041e-38 Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 3 Query: 324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617 MPS ++QQWQE+ +GFFSSSG KL+EA QTAG+FVGEVAKDAK NV DVAERVGS+ K+RWA L+QPATRHAVQE LI+AAATTGT +RKGIT TK++ Sbjct: 1 MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITAAATTGTLVRKGITETKEK 98 HSP 3 Score: 151.754 bits (382), Expect = 4.461e-36 Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 1 Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517 MD+ SLAMEMAPVIMW++D +PESYR+YW P +SP K + T T WD+L D+GE DASS IPLDD + VDFGA+EV+QCLIE HN IFTDA ETVWR Sbjct: 277 MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETAT--PWDLLSDEGEGPDASSSIPLDDIVQVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: A0A067JSD0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26285 PE=4 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 5.987e-82 Identity = 135/170 (79.41%), Postives = 155/170 (91.18%), Query Frame = 1 Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803 + AKKTAQKSKTI+TDIERWQKG+ASTDVFGVPIEVTVQRQ++ +P ILV+CADYLILSG+NS LFKAEG+KKVI+ LVS YNQD NAS+PEGVNP+DVAAL K Y+ASLPEPLTTFELY+EIK ARSSI+AM+N+LK LP+VNYMTLE ITALLLRVSQKS+LNK+ Sbjct: 108 EAAKKTAQKSKTIITDIERWQKGIASTDVFGVPIEVTVQRQRSSSLVPHILVKCADYLILSGLNSMDLFKAEGEKKVIQHLVSVYNQDSNASLPEGVNPLDVAALIKCYLASLPEPLTTFELYNEIKGARSSIYAMKNILKKLPTVNYMTLELITALLLRVSQKSLLNKM 277 HSP 2 Score: 181.03 bits (458), Expect = 3.778e-46 Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = 1 Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517 MDARSLAME+APV+MWQK++KPE YR+YWS ++P K S D P YSAWDML D+GED+DASS IPLDDG PVDF AIEVIQCLIEQHN IFTDANETVWR Sbjct: 277 MDARSLAMEIAPVVMWQKEQKPEFYRQYWSQASRNPPKRSRDPAPNYSAWDMLSDEGEDLDASSPIPLDDGTPVDFSAIEVIQCLIEQHNTIFTDANETVWR 378 HSP 3 Score: 153.68 bits (387), Expect = 1.011e-36 Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 3 Query: 324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617 MPSA + QWQEKAT FFSSSG KLKEA Q+AGT+VG VAKDA+GNV D AER GS VK+RWAFLR+P+TRH +QE+LI+AAATTG FLRKG++ TKD+ Sbjct: 1 MPSAGSPQWQEKATVFFSSSGTKLKEAGQSAGTYVGGVAKDARGNVADAAERFGSAVKSRWAFLREPSTRHVLQENLITAAATTGMFLRKGLSDTKDK 98
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: F4K3I7_ARATH (Uncharacterized Rho GTPase-activating protein OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 1.015e-81 Identity = 135/170 (79.41%), Postives = 154/170 (90.59%), Query Frame = 1 Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803 + AKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQRQ++ +PIPLILV+CADYLIL+G+NS LFKAEGD+K+I+QLVSAYNQD ASIPEGVNP+DVAAL KYY+ASLP PLTTFELY+EIK ARSSIH MR L+ L +VNY TLEFITALLLRVSQKS+LNK+ Sbjct: 108 EAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKM 277 HSP 2 Score: 149.828 bits (377), Expect = 2.174e-35 Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1 Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517 MD+ SLAMEMAPVIMW++D +PESYR+YW P +SP K + T T WD+L D+GE DASS IPLDD VDFGA+EV+QCLIE HN IFTDA ETVWR Sbjct: 277 MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETAT--PWDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376 HSP 3 Score: 126.716 bits (317), Expect = 1.092e-27 Identity = 61/78 (78.21%), Postives = 70/78 (89.74%), Query Frame = 3 Query: 384 GVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617 G KL+EA QTAG+FVGEVAKDAK NV DVAERVGS+ K+RWA L+QPATRHAVQE LI+AAATTGTF+RKGIT TK++ Sbjct: 21 GTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEK 98 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
Pages
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094274 ID=g.barbadense_cottongen_reftransV1_0094274; Name=g.barbadense_cottongen_reftransV1_0094274; organism=Gossypium barbadense; type=contig; length=2888bpback to top |