g.barbadense_cottongen_reftransV1_0094274, g.barbadense_cottongen_reftransV1_0094274 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094274
Unique Nameg.barbadense_cottongen_reftransV1_0094274
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2888
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
At12chromosomeg.barbadense_cottongen_reftransV1_0094274:1..2888 .
At12:86551515..86556437 -
n/a
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG25_HUMAN (Rho GTPase-activating protein 25 OS=Homo sapiens GN=ARHGAP25 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.559e-10
Identity = 47/173 (27.17%), Postives = 83/173 (47.98%), Query Frame = 1
Query: 1339 DIERWQK---GVAST--DVFGVPIEVTVQRQQAIKP--IPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYD---------EIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809
            ++E W K    VA T   VFG  ++ TV  +Q   P  +P+++ +CA++++  G N + +F+  G   +++QL  A++     S     +   VA+L K Y+  LPEP+  +  Y+             A++    M+  L +LP  NY  L +I   L  +     +NK+ V
Sbjct:  138 EMEEWVKFLRRVAGTPCGVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLTNADEAKAQQELMKQ-LSILPRDNYSLLSYICRFLHEIQLNCAVNKMSV 309          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG01_HUMAN (Rho GTPase-activating protein 1 OS=Homo sapiens GN=ARHGAP1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.891e-10
Identity = 43/149 (28.86%), Postives = 76/149 (51.01%), Query Frame = 1
Query: 1381 FGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDV-AALAKYYIASLPEPLTTFELYDEI-------KSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            FGV ++   ++    +PIP++L     YL    + ++ +F+   + +V+ ++   YN        +  N + + A + K ++  LPEPL TF+LY  +       +S R  + A   VL+ LP  NY  L F+TA L+++S  S  NK+
Sbjct:  242 FGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDF-DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQR--VPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKM 387          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG24_HUMAN (Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.248e-10
Identity = 45/178 (25.28%), Postives = 83/178 (46.63%), Query Frame = 1
Query: 1327 TILTDIERWQK-------GVASTDVFGVPIEVTV--QRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEI--------KSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809
            +   D+E W K       G     +FG  +E TV  +++   +  P+++ +C D++   G+  + LF+  G   ++++L  A++     S     +   VA+L K Y+  LPEP+  +  Y++         K   + +  +   +K LP VNY  L++I   L  V   S +NK+ V
Sbjct:  108 STQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSV 285          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG01_MOUSE (Rho GTPase-activating protein 1 OS=Mus musculus GN=Arhgap1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.163e-10
Identity = 41/149 (27.52%), Postives = 74/149 (49.66%), Query Frame = 1
Query: 1381 FGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDV-AALAKYYIASLPEPLTTFELYDEI-------KSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            FGV ++   ++     PIP++L     YL    + ++ +F+   + +V+ ++   YN        +  N + + A + K ++  LPEPL TF+LY  +       +S R  +   + VL+ LP  NY  L F+TA L+++S     NK+
Sbjct:  242 FGVSLQHLQEKSPGQDPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDF-DQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQR--VEVTQQVLQTLPEENYQVLHFLTAFLVQISAHCDQNKM 387          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG24_RAT (Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.307e-10
Identity = 44/176 (25.00%), Postives = 82/176 (46.59%), Query Frame = 1
Query: 1327 TILTDIERWQK-------GVASTDVFGVPIEVTV--QRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEI--------KSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            +   D+E W K       G     +FG  +E TV  +++   +  P+++ +C D++   G+  + LF+  G   ++++L  A++     S     +   VA+L K Y+  LPEP+  +  Y++         K   + +  +   +K LP VNY  L++I   L  V   S +NK+
Sbjct:  107 STQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPYAKYEDFLSCATLLSKEEEAGVKELTKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKM 282          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG24_MOUSE (Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.075e-9
Identity = 44/176 (25.00%), Postives = 82/176 (46.59%), Query Frame = 1
Query: 1327 TILTDIERWQK-------GVASTDVFGVPIEVTV--QRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEI--------KSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            +   D+E W K       G     +FG  +E TV  +++   +  P+++ +C D++   G+  + LF+  G   ++++L  A++     S     +   VA+L K Y+  LPEP+  +  Y++         K   + +  +   +K LP VNY  L++I   L  V   S +NK+
Sbjct:  106 STQNDMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPYAKYEDFLSCATLLSKEEEAGVKELMKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKM 281          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RBP1_MOUSE (RalA-binding protein 1 OS=Mus musculus GN=Ralbp1 PE=1 SV=4)

HSP 1 Score: 63.5438 bits (153), Expect = 7.190e-9
Identity = 42/152 (27.63%), Postives = 74/152 (48.68%), Query Frame = 1
Query: 1378 VFGVPIEVTVQRQQAIKPI--PLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNV------LKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809
            +FGVP+   V+R      +  P +   C DY+   G+  + +++  G K  +++L +AY+++ + ++ E   P  VA+L K Y+  LPE L T EL    + A      M  V      L+ LP  N++ L ++   L  V  K +  K+ +
Sbjct:  189 IFGVPLVDAVERTMMYDGVRLPAVFRECVDYMEKHGMKCEGVYRVSGIKSKVDELKAAYDREESPNL-EEYEPNTVASLLKQYLRDLPENLLTKELMPRFEEACGKTTEMEKVQEFQRLLRELPECNHLLLSWLIVHLDHVIAKELETKMNI 339          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RBP1_HUMAN (RalA-binding protein 1 OS=Homo sapiens GN=RALBP1 PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 8.521e-9
Identity = 40/152 (26.32%), Postives = 75/152 (49.34%), Query Frame = 1
Query: 1378 VFGVPIEVTVQRQQAIKPI--PLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSA------RSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809
            +FG+P+   V+R      I  P +   C DY+   G+  + +++  G K  +++L +AY+++ + ++ E   P  VA+L K Y+  LPE L T EL    + A         +   + +LK LP  NY+ + ++   +  V  K +  K+ +
Sbjct:  189 IFGIPLADAVERTMMYDGIRLPAVFRECIDYVEKYGMKCEGIYRVSGIKSKVDELKAAYDREESTNL-EDYEPNTVASLLKQYLRDLPENLLTKELMPRFEEACGRTTETEKVQEFQRLLKELPECNYLLISWLIVHMDHVIAKELETKMNI 339          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG08_HUMAN (Rho GTPase-activating protein 8 OS=Homo sapiens GN=ARHGAP8 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.646e-8
Identity = 40/146 (27.40%), Postives = 73/146 (50.00%), Query Frame = 1
Query: 1381 FGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEI---KSARSSIH--AMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            FGV ++    + Q  + IP +L     YL   G+ ++ LF+     + + ++   YNQ    +  +  +    A + K ++  LP+PL TF+ Y++I       SS+     R +L+ LP  NY+ L ++   L  VS++S+ NK+
Sbjct:  224 FGVSLQYLKDKNQG-ELIPPVLRFTVTYLREKGLRTEGLFRRSASVQTVREIQRLYNQGKPVNFDDYGDIHIPAVILKTFLRELPQPLLTFQAYEQILGITCVESSLRVTGCRQILRSLPEHNYVVLRYLMGFLHAVSRESIFNKM 368          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG44_HUMAN (Rho GTPase-activating protein 44 OS=Homo sapiens GN=ARHGAP44 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.195e-8
Identity = 44/174 (25.29%), Postives = 82/174 (47.13%), Query Frame = 1
Query: 1324 KTILTDIERWQKGVASTDVFGVPIE--VTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYN------QDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDE------IKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            + +L  I+  Q+       FG P+E  +T+  ++   PI      C   L+  G+  + LF+       +++L +A +      Q+++A      +P  +A   K Y+  LPEPL TFELYDE      ++     + A+ N  + LP  N+  + ++   L ++S+   +NK+
Sbjct:  234 QAVLPQIKAQQEAWVEKPSFGKPLEEHLTISGREIAFPI----EACVTMLLECGMQEEGLFRVAPSASKLKKLKAALDCCVVDVQEYSA------DPHAIAGALKSYLRELPEPLMTFELYDEWIQASNVQEQDKKLQALWNACEKLPKANHNNIRYLIKFLSKLSEYQDVNKM 397          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: V7AJZ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G215200g PE=4 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.377e-82
Identity = 136/170 (80.00%), Postives = 153/170 (90.00%), Query Frame = 1
Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            +VAK TAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQ   KPIP ILV CADYLI+SG+NS YLFK+EG+K+VI+QLVS YNQD  AS+PEG NP+DVAAL KYY+ASLPEPLTT ELY+EI+ ARSSI++ RN+LK L SVNYMTLEFITALLLRVSQKS+LNK+
Sbjct:  108 EVAKITAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQDYCKPIPQILVNCADYLIVSGLNSPYLFKSEGNKRVIQQLVSLYNQDSTASVPEGTNPVDVAALVKYYLASLPEPLTTLELYNEIRGARSSIYSTRNILKRLSSVNYMTLEFITALLLRVSQKSLLNKM 277          

HSP 2 Score: 164.081 bits (414), Expect = 2.928e-40
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 1
Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MDAR+LA+EMAPVIMWQK+ +PE YR+YW+   KSPS+ S+D+    +AWDML DDGE +DASS IPLDDG PVDFGAIEVIQ L+E HN IFTDANETVW+
Sbjct:  277 MDARTLAIEMAPVIMWQKESRPEFYRQYWNQMSKSPSEKSVDTPLDNTAWDMLADDGEAIDASSPIPLDDGTPVDFGAIEVIQLLVEHHNAIFTDANETVWK 378          

HSP 3 Score: 153.295 bits (386), Expect = 1.562e-36
Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPS ++ QWQ+KA GF SSSGVKLKEA ++AGTFVGEV KD K NV++VA RVGSMVK+RWA L+QP+TRHAVQ+ LISAAATTGT LR+G +GTKD+
Sbjct:    1 MPSIMSPQWQDKAAGFLSSSGVKLKEAKESAGTFVGEVTKDTKSNVSEVAGRVGSMVKSRWALLQQPSTRHAVQDRLISAAATTGTLLRRGFSGTKDK 98          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: C6T8Q7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.720e-82
Identity = 135/170 (79.41%), Postives = 152/170 (89.41%), Query Frame = 1
Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            +VAK TAQKSKTILTDIERWQKG+ASTD+FGVPIEVT QRQ   KPIP ILV+C DYLI+SG+NS  LFK+EGDKKVI QLVS YNQD  AS+PEG NP+DVAAL KYY+ASLPEPLTT ELY+EI+SARSSI++MRN+LK L SVNYMTLEFITALLLRVSQKS+LNK+
Sbjct:  108 EVAKITAQKSKTILTDIERWQKGIASTDLFGVPIEVTAQRQDCSKPIPQILVKCGDYLIVSGLNSPNLFKSEGDKKVIHQLVSLYNQDSTASVPEGTNPVDVAALVKYYLASLPEPLTTLELYNEIRSARSSIYSMRNILKRLSSVNYMTLEFITALLLRVSQKSLLNKM 277          

HSP 2 Score: 164.466 bits (415), Expect = 1.854e-40
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 1
Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTP-TYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MDARSLAMEMAPVIMWQK+R+PE Y +YW+   KS S  ++D TP +Y+AWDML DDGE  DASS IPLDDG PVDFGAIEV+Q L E HN IFTDANETVW+
Sbjct:  277 MDARSLAMEMAPVIMWQKERRPEFYHQYWNQVSKSLSNKTVDPTPGSYTAWDMLADDGEATDASSPIPLDDGTPVDFGAIEVVQLLTEHHNAIFTDANETVWK 379          

HSP 3 Score: 152.91 bits (385), Expect = 1.921e-36
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 3
Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPS ++ QWQ+KA GFFSSSGVKLKEA ++AGTFVGEV KD K NV +VA RVGSMVK+RWA L+QP+TRHAVQ+  ISAAATTGT LR+G +GTKD+
Sbjct:    1 MPSIMSPQWQDKAAGFFSSSGVKLKEAKESAGTFVGEVTKDTKSNVAEVAGRVGSMVKSRWALLQQPSTRHAVQDRFISAAATTGTLLRRGFSGTKDK 98          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: D7MV30_ARALL (Small G protein family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496313 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 3.071e-82
Identity = 135/170 (79.41%), Postives = 155/170 (91.18%), Query Frame = 1
Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            + AKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQRQ++ +PIPLIL++CADYLIL+G+NS  LFKAEGDKK+I+QLVSAYNQD +ASIPEGVNP+DVAAL KYY+ASLP PLTTFELY+EIK ARSSIH MR  L+ L +VNY TLEFITALLLRVSQKS+LNK+
Sbjct:  108 EAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILIKCADYLILTGLNSPNLFKAEGDKKLIQQLVSAYNQDPSASIPEGVNPVDVAALMKYYLASLPTPLTTFELYNEIKDARSSIHRMRKSLQKLSNVNYNTLEFITALLLRVSQKSLLNKM 277          

HSP 2 Score: 158.688 bits (400), Expect = 2.041e-38
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 3
Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPS ++QQWQE+ +GFFSSSG KL+EA QTAG+FVGEVAKDAK NV DVAERVGS+ K+RWA L+QPATRHAVQE LI+AAATTGT +RKGIT TK++
Sbjct:    1 MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITAAATTGTLVRKGITETKEK 98          

HSP 3 Score: 151.754 bits (382), Expect = 4.461e-36
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MD+ SLAMEMAPVIMW++D +PESYR+YW  P +SP K +   T T   WD+L D+GE  DASS IPLDD + VDFGA+EV+QCLIE HN IFTDA ETVWR
Sbjct:  277 MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETAT--PWDLLSDEGEGPDASSSIPLDDIVQVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: A0A067JSD0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26285 PE=4 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 5.987e-82
Identity = 135/170 (79.41%), Postives = 155/170 (91.18%), Query Frame = 1
Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            + AKKTAQKSKTI+TDIERWQKG+ASTDVFGVPIEVTVQRQ++   +P ILV+CADYLILSG+NS  LFKAEG+KKVI+ LVS YNQD NAS+PEGVNP+DVAAL K Y+ASLPEPLTTFELY+EIK ARSSI+AM+N+LK LP+VNYMTLE ITALLLRVSQKS+LNK+
Sbjct:  108 EAAKKTAQKSKTIITDIERWQKGIASTDVFGVPIEVTVQRQRSSSLVPHILVKCADYLILSGLNSMDLFKAEGEKKVIQHLVSVYNQDSNASLPEGVNPLDVAALIKCYLASLPEPLTTFELYNEIKGARSSIYAMKNILKKLPTVNYMTLELITALLLRVSQKSLLNKM 277          

HSP 2 Score: 181.03 bits (458), Expect = 3.778e-46
Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = 1
Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MDARSLAME+APV+MWQK++KPE YR+YWS   ++P K S D  P YSAWDML D+GED+DASS IPLDDG PVDF AIEVIQCLIEQHN IFTDANETVWR
Sbjct:  277 MDARSLAMEIAPVVMWQKEQKPEFYRQYWSQASRNPPKRSRDPAPNYSAWDMLSDEGEDLDASSPIPLDDGTPVDFSAIEVIQCLIEQHNTIFTDANETVWR 378          

HSP 3 Score: 153.68 bits (387), Expect = 1.011e-36
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPSA + QWQEKAT FFSSSG KLKEA Q+AGT+VG VAKDA+GNV D AER GS VK+RWAFLR+P+TRH +QE+LI+AAATTG FLRKG++ TKD+
Sbjct:    1 MPSAGSPQWQEKATVFFSSSGTKLKEAGQSAGTYVGGVAKDARGNVADAAERFGSAVKSRWAFLREPSTRHVLQENLITAAATTGMFLRKGLSDTKDK 98          
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: F4K3I7_ARATH (Uncharacterized Rho GTPase-activating protein OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.015e-81
Identity = 135/170 (79.41%), Postives = 154/170 (90.59%), Query Frame = 1
Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            + AKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQRQ++ +PIPLILV+CADYLIL+G+NS  LFKAEGD+K+I+QLVSAYNQD  ASIPEGVNP+DVAAL KYY+ASLP PLTTFELY+EIK ARSSIH MR  L+ L +VNY TLEFITALLLRVSQKS+LNK+
Sbjct:  108 EAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKM 277          

HSP 2 Score: 149.828 bits (377), Expect = 2.174e-35
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MD+ SLAMEMAPVIMW++D +PESYR+YW  P +SP K +   T T   WD+L D+GE  DASS IPLDD   VDFGA+EV+QCLIE HN IFTDA ETVWR
Sbjct:  277 MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETAT--PWDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376          

HSP 3 Score: 126.716 bits (317), Expect = 1.092e-27
Identity = 61/78 (78.21%), Postives = 70/78 (89.74%), Query Frame = 3
Query:  384 GVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            G KL+EA QTAG+FVGEVAKDAK NV DVAERVGS+ K+RWA L+QPATRHAVQE LI+AAATTGTF+RKGIT TK++
Sbjct:   21 GTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEK 98          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
RHG25_HUMAN3.559e-1027.17Rho GTPase-activating protein 25 OS=Homo sapiens G... [more]
RHG01_HUMAN4.891e-1028.86Rho GTPase-activating protein 1 OS=Homo sapiens GN... [more]
RHG24_HUMAN5.248e-1025.28Rho GTPase-activating protein 24 OS=Homo sapiens G... [more]
RHG01_MOUSE9.163e-1027.52Rho GTPase-activating protein 1 OS=Mus musculus GN... [more]
RHG24_RAT9.307e-1025.00Rho GTPase-activating protein 24 OS=Rattus norvegi... [more]
RHG24_MOUSE1.075e-925.00Rho GTPase-activating protein 24 OS=Mus musculus G... [more]
RBP1_MOUSE7.190e-927.63RalA-binding protein 1 OS=Mus musculus GN=Ralbp1 P... [more]
RBP1_HUMAN8.521e-926.32RalA-binding protein 1 OS=Homo sapiens GN=RALBP1 P... [more]
RHG08_HUMAN2.646e-827.40Rho GTPase-activating protein 8 OS=Homo sapiens GN... [more]
RHG44_HUMAN3.195e-825.29Rho GTPase-activating protein 44 OS=Homo sapiens G... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7AJZ1_PHAVU1.377e-8280.00Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
C6T8Q7_SOYBN1.720e-8279.41Putative uncharacterized protein OS=Glycine max PE... [more]
D7MV30_ARALL3.071e-8279.41Small G protein family protein OS=Arabidopsis lyra... [more]
A0A067JSD0_JATCU5.987e-8279.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
F4K3I7_ARATH1.015e-8179.41Uncharacterized Rho GTPase-activating protein OS=A... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainSMARTSM00324RhoGAP_3coord: 32..178
e-value: 4.6E-13
score: 59.4
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 35..174
e-value: 5.1E-25
score: 87.9
IPR000198Rho GTPase-activating protein domainGENE3D1.10.555.10coord: 5..174
e-value: 5.6E-35
score: 120.0
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 19..183
score: 26.256
NoneNo IPR availablePANTHERPTHR23176RHO/RAC/CDC GTPASE-ACTIVATING PROTEINcoord: 1..157
NoneNo IPR availablePANTHERPTHR23176:SF32SUBFAMILY NOT NAMEDcoord: 1..157
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 146..156
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 157..178
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..125
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 179..183
NoneNo IPR availableTMHMMTMhelixcoord: 157..176
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 14..174

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094274 ID=g.barbadense_cottongen_reftransV1_0094274; Name=g.barbadense_cottongen_reftransV1_0094274; organism=Gossypium barbadense; type=contig; length=2888bp
TTTTAAATTGAACTTAATATTAAAATTGAACTGTTACAGCTATAAAAAGA
AAAGTAGCACTTTCGACTTTCGCTATCACCTACCGATTCATCTAGCCAAA
AAGAAAAGTTCGTCTTTGATCGTTGCTTCATTTAAGCAACACCAAAAGGT
AAGTATTTTTTTTTTCAGTTTTCCGTCAAAAATTAGGGCTCTGTATCGAT
CATTTATTTTTTTGATCACTAAAAACGATTATGTATCAATTCAATATCGC
TTATTTTCTCCCAAGTTTCAAATCTTTGCTTTTTTGGTAGTTCCTTTTTT
TCGGTTTGCGTTAATCGGAAGCGATGCCTTCAGCTGTAACGCAGCAGTGG
CAAGAGAAGGCGACTGGTTTTTTTTCTTCCTCAGGGGTGAAGCTGAAGGA
AGCTAGCCAAACCGCCGGCACGTTTGTTGGAGAAGTTGCAAAGGATGCCA
AAGGCAACGTCACTGACGTGGCGGAACGAGTTGGTTCCATGGTCAAAAAC
CGATGGGCGTTTCTCCGGCAGCCAGCGACAAGACATGCTGTGCAAGAGAG
TCTTATATCGGCTGCTGCAACGACCGGAACCTTTTTGAGGAAAGGCATCA
CCGGGACTAAAGACAGGGTTGTTGTTGGGAAAACAAAAGTTGAAGAGGTA
AAAAGAAAAGAATCTCTAAGAGTAACTTTAATTGATCCCTTTTTAATAAA
AAGGATCTTACGGACTATTATATATGTTGTTCAACGTATTAATAATCAAT
TACATCGTGAGAGAGGATGGGCTACCATTTAAATTTTGATGTTTCCTGTA
GCATTTGATATATCTGCCTATAGTGTTATGCCACTGGAATCTTATTCCGT
GCTTGACCAATTATTCTTAATTGTGATTGTTTGTTTTTTAGACTCTGTTT
CTTTTCTGTCTAATTTCCTGCTTTGTAGATTGCCTTTCATTCGGTTCTTT
ACTCTGATAGGTTAAGCTTGTGCTGTTATCAAAATTTTGTACACCACGGA
AAGGGTTTTAGTTGCTTCTTCTTTTTCCATTGGGTATTATTACTTGATTC
ACTTCTCTTATTGCAGAACTATCAAGGTTTCAAGTAACTAGTGAATTTCG
GACCTCTCTATCCATTCGTGTTATTATGATATTTGTTGATGTTACAGTTG
ACCTTGTATAATTAAGAATGCAATATATTGATGCTTAAACAAGGCATTGA
TGTAACTATTTTTTGTCTTACAGACTAGGCTAACCTAGGCCTCTACAGAA
ATCATGGTAAAAAATGACTTATATGTAATGGTGAATTTGTTTACAGGTGG
CAAAAAAGACTGCACAGAAAAGCAAGACAATTTTGACAGATATAGAACGA
TGGCAGAAGGGTGTTGCCAGCACTGATGTATTTGGAGTTCCTATTGAGGT
TACTGTGCAGCGGCAGCAAGCCATCAAGCCCATCCCTCTTATATTGGTGA
GATGTGCAGATTATCTCATATTATCAGGTATAAATTCTCAATACTTGTTT
AAAGCTGAAGGAGATAAGAAGGTCATTGAGCAATTGGTTTCTGCATACAA
CCAAGATTTTAATGCCTCCATACCAGAGGGTGTGAATCCAATTGATGTAG
CAGCTCTAGCCAAATATTATATTGCTAGTCTTCCTGAGCCATTGACCACC
TTTGAGCTTTATGATGAGATCAAAAGTGCCCGTTCTAGCATACATGCTAT
GAGGAATGTACTAAAAATGCTTCCTAGTGTAAATTACATGACTCTTGAGT
TCATCACTGCATTGCTGCTTCGTGTTAGCCAGAAATCAGTCCTTAACAAA
GTAGGAGTTATCTGTTTCTCTCTCTCTATCTGTCTGTTTATCTCTTTGCT
TTCATGCATTTCATTTAAAGGTGGTTTCGAGTAAGGTTGGATATAATTGT
GAAAGCTTATATTTCTCCACATATGTGAGTTGCCATTCAGACCTGATGAA
TTTCTATATTGCCTTGTACTGATGGGCTAAAGCTAACTTGATGATCAAAA
TGATCTCTGTTTCGTGGAAAATTTATCTCTCTGAGGTCATTGTTAGCATC
TTTTTATTAGTCTTATGAACAAAATACCTATATAAATAAAGCAATTTCCT
GGTTTCTTCACTTCCCCATCCCTCCAAACAGTTGTCTTGCAGTTATGTGC
TTATTATTATCTGATAGACAAGTTGTACCTTTAACAATGTTTTATTGTTA
TCTTCCAATAGATGGATGCACGAAGCCTTGCCATGGAAATGGCCCCTGTT
ATTATGTGGCAGAAGGATAGAAAACCAGAATCTTATAGGAAATACTGGAG
CCATCCACCCAAAAGTCCTTCTAAGGGTAGCATGGATTCAACCCCTACTT
ATAGTGCATGGGACATGCTTGAAGATGATGGAGAAGATATGGATGCTTCC
TCCCACATTCCTTTGGATGATGGTATCCCGGTTGATTTTGGTGCCATTGA
GGTCATTCAATGCCTCATAGAACAACACAATCCCATATTTACAGACGCTA
ATGAGACAGTCTGGAGATGACCGAGACTAGATGATTCCTTGTGGGCAGCC
AAGTCAATCATATCCGGGAAAAAGACGAGGACAGAGTAAATATATAAATT
CTTTGAAGGTCTATTTGCCACCTGTTTTGTAACTTTTAACAGAAATAAAG
GCAAATTGGCAATAGTGAATATTTTCACATGAACAAGTTGACACTTACAA
GAATCCTCTGCAAATGCGTTTCACATAAAGTTTTAAATTGCATCACTCTT
GCTTATTCTCATATTTGGGTTTGACATAGTGTAATGGCAAGTAATGCTAC
TTTGACTGAGGTGTAATTATAGGACTTGTAAATGTGTAATTATAAATTTT
AATTTTCTATTAAAAATAGTAATTTGACTAAATGTGTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction