g.barbadense_cottongen_reftransV1_0094274, g.barbadense_cottongen_reftransV1_0094274 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0094274
Unique Name	g.barbadense_cottongen_reftransV1_0094274
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2888

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
At12	chromosome	g.barbadense_cottongen_reftransV1_0094274:1..2888 . At12:86551515..86556437 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RGAPX_ARATH (Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 7.537e-84
Identity = 135/170 (79.41%), Postives = 154/170 (90.59%), Query Frame = 1

Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            + AKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQRQ++ +PIPLILV+CADYLIL+G+NS  LFKAEGD+K+I+QLVSAYNQD  ASIPEGVNP+DVAAL KYY+ASLP PLTTFELY+EIK ARSSIH MR  L+ L +VNY TLEFITALLLRVSQKS+LNK+
Sbjct:  108 EAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKM 277

HSP 2 Score: 160.614 bits (405), Expect = 5.371e-41
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 3

Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPS ++QQWQE+ +GFFSSSG KL+EA QTAG+FVGEVAKDAK NV DVAERVGS+ K+RWA L+QPATRHAVQE LI+AAATTGTF+RKGIT TK++
Sbjct:    1 MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEK 98

HSP 3 Score: 150.214 bits (378), Expect = 1.665e-37
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1

Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MD+ SLAMEMAPVIMW++D +PESYR+YW  P +SP K +   T T   WD+L D+GE  DASS IPLDD   VDFGA+EV+QCLIE HN IFTDA ETVWR
Sbjct:  277 MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETAT--PWDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: GACJJ_DICDI (Rho GTPase-activating protein gacJJ OS=Dictyostelium discoideum GN=gacJJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.148e-14
Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = 1

Query: 1378 VFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSAR------SSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809
            VFGVPIE TV     I   P ++++  DY+    ++   +F+  G    IEQ  + Y++     + + V+P  VA L K Y+  LP+PL T+E YD   +A+      S I  +++++K LP VNY  L ++ A + +V+  S  NK+ V
Sbjct:  425 VFGVPIEKTVSGNNEI---PAVVLQTIDYIEKKAMDIVGIFRLSGSVLTIEQWKAKYDKGEKVDLFQEVDPHAVAGLLKLYLRELPDPLLTYEKYDNFIAAQSIDDFPSRIKLIKHLVKSLPPVNYAVLSYLMAFVGKVATHSAANKMQV 571

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG35_RAT (Rho GTPase-activating protein 35 OS=Rattus norvegicus GN=Arhgap35 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.433e-14
Identity = 42/154 (27.27%), Postives = 81/154 (52.60%), Query Frame = 1

Query: 1357 KGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPID-VAALAKYYIASLPEPLTTFELY------DEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLN 1797
            K    ++ FGVP+   V  +   KPIP+ + RC +Y+  +G++++ +++  G+K  +E L   ++QD N  + E    ++ VA   K + + LP+PL  + +        +I      +HA++ VLK  P  N+   +++ + L RVS  + +N
Sbjct: 1239 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNRVSHNNKVN 1389

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG35_HUMAN (Rho GTPase-activating protein 35 OS=Homo sapiens GN=ARHGAP35 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.035e-13
Identity = 41/154 (26.62%), Postives = 81/154 (52.60%), Query Frame = 1

Query: 1357 KGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPID-VAALAKYYIASLPEPLTTFELY------DEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLN 1797
            K    ++ FGVP+   V  +   KPIP+ + RC +Y+  +G++++ +++  G+K  +E L   ++QD N  + E    ++ VA   K + + LP+PL  + +        +I      +HA++ VLK  P  N+   +++ + L +VS  + +N
Sbjct: 1239 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVN 1389

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG35_MOUSE (Rho GTPase-activating protein 35 OS=Mus musculus GN=Arhgap35 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.105e-13
Identity = 41/154 (26.62%), Postives = 81/154 (52.60%), Query Frame = 1

Query: 1357 KGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPID-VAALAKYYIASLPEPLTTFELY------DEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLN 1797
            K    ++ FGVP+   V  +   KPIP+ + RC +Y+  +G++++ +++  G+K  +E L   ++QD N  + E    ++ VA   K + + LP+PL  + +        +I      +HA++ VLK  P  N+   +++ + L +VS  + +N
Sbjct: 1239 KATWESNYFGVPLTTVVTPE---KPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYSMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVN 1389

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG35_CANFA (Rho GTPase-activating protein 35 OS=Canis familiaris GN=ARHGAP35 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.716e-13
Identity = 41/154 (26.62%), Postives = 81/154 (52.60%), Query Frame = 1

Query: 1357 KGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPID-VAALAKYYIASLPEPLTTFELY------DEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLN 1797
            K    ++ FGVP+   V  +   KPIP+ + RC +Y+  +G++++ +++  G+K  +E L   ++QD N  + E    ++ VA   K + + LP+PL  + +        +I      +HA++ VLK  P  N+   +++ + L +VS  + +N
Sbjct: 1240 KATWESNYFGVPLTTVVTPE---KPIPVFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVN 1390

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG05_MOUSE (Rho GTPase-activating protein 5 OS=Mus musculus GN=Arhgap5 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.210e-12
Identity = 45/151 (29.80%), Postives = 81/151 (53.64%), Query Frame = 1

Query: 1372 TDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFN---ASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSA------RSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLN 1797
            ++ FG+P++  V    A KPIPL + +C +++  +G+ ++ L++  G+K   + +   ++QD N   AS+   VN   VA   K + A LP+PL  + L+ E+  A          HA++ ++K    VNY    ++   L RVSQ++ +N
Sbjct: 1256 SNYFGMPLQDLVT---AEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLASMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERFHALKEIVKKFHPVNYDVFRYVITHLNRVSQQNKIN 1401

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RG68F_DROME (Rho GTPase-activating protein 68F OS=Drosophila melanogaster GN=RhoGAP68F PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.901e-12
Identity = 52/162 (32.10%), Postives = 83/162 (51.23%), Query Frame = 1

Query: 1354 QKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSG-INSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEI-------KSARSSIHAMRNVLKM----LPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            Q  +A+T  FGVP++  V     +  IP I+ +C D L ++G I+++ +F+  G+   I  L    N+  +  + + VN   +A L K ++  L EPL TFELY+++       K  RS     RNV ++    LP  NY   ++I   L+RV     LNK+
Sbjct:  265 QHKMATTHQFGVPLKFIVMNSPCLNSIPPIVRKCVDSLSITGVIDTEGIFRRSGNHSEIMALKERVNRGEDVDL-KSVNVHVIAGLLKSFLRDLAEPLLTFELYEDVTGFLDWPKEERS-----RNVTQLIREKLPEENYELFKYIVEFLVRVMDCEDLNKM 420

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG05_HUMAN (Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.392e-11
Identity = 44/151 (29.14%), Postives = 80/151 (52.98%), Query Frame = 1

Query: 1372 TDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFN---ASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSA------RSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLN 1797
            ++ FG+P++  V    A KPIPL + +C +++  +G+ ++ L++  G+K   + +   ++QD N    S+   VN   VA   K + A LP+PL  + L+ E+  A         +HA++ ++K    VNY    ++   L RVSQ+  +N
Sbjct: 1257 SNYFGMPLQDLVT---AEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKIN 1402

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Match: RHG25_MOUSE (Rho GTPase-activating protein 25 OS=Mus musculus GN=Arhgap25 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.044e-10
Identity = 46/177 (25.99%), Postives = 82/177 (46.33%), Query Frame = 1

Query: 1339 DIERWQK------GVASTDVFGVPIEVTVQRQQAIKP--IPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELY------------DEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKVGV 1809
            ++E W K      G  S  VFG  ++ TV  +Q   P  +P+++ +CA++++  G++ + +F+  G   +++QL  A++     S     +   VA+L K Y+  LPEP+  +  Y            DE K+ +  +      L  LP  NY  L +I   L  +     +NK+ V
Sbjct:  138 EMEEWVKFLRRVAGTPSGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGVSEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQ----LSTLPRDNYNLLSYICRFLHEIQLNCAVNKMSV 310

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: V7AJZ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G215200g PE=4 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.377e-82
Identity = 136/170 (80.00%), Postives = 153/170 (90.00%), Query Frame = 1

Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            +VAK TAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQ   KPIP ILV CADYLI+SG+NS YLFK+EG+K+VI+QLVS YNQD  AS+PEG NP+DVAAL KYY+ASLPEPLTT ELY+EI+ ARSSI++ RN+LK L SVNYMTLEFITALLLRVSQKS+LNK+
Sbjct:  108 EVAKITAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQDYCKPIPQILVNCADYLIVSGLNSPYLFKSEGNKRVIQQLVSLYNQDSTASVPEGTNPVDVAALVKYYLASLPEPLTTLELYNEIRGARSSIYSTRNILKRLSSVNYMTLEFITALLLRVSQKSLLNKM 277

HSP 2 Score: 164.081 bits (414), Expect = 2.928e-40
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 1

Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MDAR+LA+EMAPVIMWQK+ +PE YR+YW+   KSPS+ S+D+    +AWDML DDGE +DASS IPLDDG PVDFGAIEVIQ L+E HN IFTDANETVW+
Sbjct:  277 MDARTLAIEMAPVIMWQKESRPEFYRQYWNQMSKSPSEKSVDTPLDNTAWDMLADDGEAIDASSPIPLDDGTPVDFGAIEVIQLLVEHHNAIFTDANETVWK 378

HSP 3 Score: 153.295 bits (386), Expect = 1.562e-36
Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 3

Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPS ++ QWQ+KA GF SSSGVKLKEA ++AGTFVGEV KD K NV++VA RVGSMVK+RWA L+QP+TRHAVQ+ LISAAATTGT LR+G +GTKD+
Sbjct:    1 MPSIMSPQWQDKAAGFLSSSGVKLKEAKESAGTFVGEVTKDTKSNVSEVAGRVGSMVKSRWALLQQPSTRHAVQDRLISAAATTGTLLRRGFSGTKDK 98

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: C6T8Q7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.720e-82
Identity = 135/170 (79.41%), Postives = 152/170 (89.41%), Query Frame = 1

Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            +VAK TAQKSKTILTDIERWQKG+ASTD+FGVPIEVT QRQ   KPIP ILV+C DYLI+SG+NS  LFK+EGDKKVI QLVS YNQD  AS+PEG NP+DVAAL KYY+ASLPEPLTT ELY+EI+SARSSI++MRN+LK L SVNYMTLEFITALLLRVSQKS+LNK+
Sbjct:  108 EVAKITAQKSKTILTDIERWQKGIASTDLFGVPIEVTAQRQDCSKPIPQILVKCGDYLIVSGLNSPNLFKSEGDKKVIHQLVSLYNQDSTASVPEGTNPVDVAALVKYYLASLPEPLTTLELYNEIRSARSSIYSMRNILKRLSSVNYMTLEFITALLLRVSQKSLLNKM 277

HSP 2 Score: 164.466 bits (415), Expect = 1.854e-40
Identity = 74/103 (71.84%), Postives = 84/103 (81.55%), Query Frame = 1

Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTP-TYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MDARSLAMEMAPVIMWQK+R+PE Y +YW+   KS S  ++D TP +Y+AWDML DDGE  DASS IPLDDG PVDFGAIEV+Q L E HN IFTDANETVW+
Sbjct:  277 MDARSLAMEMAPVIMWQKERRPEFYHQYWNQVSKSLSNKTVDPTPGSYTAWDMLADDGEATDASSPIPLDDGTPVDFGAIEVVQLLTEHHNAIFTDANETVWK 379

HSP 3 Score: 152.91 bits (385), Expect = 1.921e-36
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 3

Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPS ++ QWQ+KA GFFSSSGVKLKEA ++AGTFVGEV KD K NV +VA RVGSMVK+RWA L+QP+TRHAVQ+  ISAAATTGT LR+G +GTKD+
Sbjct:    1 MPSIMSPQWQDKAAGFFSSSGVKLKEAKESAGTFVGEVTKDTKSNVAEVAGRVGSMVKSRWALLQQPSTRHAVQDRFISAAATTGTLLRRGFSGTKDK 98

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: D7MV30_ARALL (Small G protein family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496313 PE=4 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 3.071e-82
Identity = 135/170 (79.41%), Postives = 155/170 (91.18%), Query Frame = 1

Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            + AKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQRQ++ +PIPLIL++CADYLIL+G+NS  LFKAEGDKK+I+QLVSAYNQD +ASIPEGVNP+DVAAL KYY+ASLP PLTTFELY+EIK ARSSIH MR  L+ L +VNY TLEFITALLLRVSQKS+LNK+
Sbjct:  108 EAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILIKCADYLILTGLNSPNLFKAEGDKKLIQQLVSAYNQDPSASIPEGVNPVDVAALMKYYLASLPTPLTTFELYNEIKDARSSIHRMRKSLQKLSNVNYNTLEFITALLLRVSQKSLLNKM 277

HSP 2 Score: 158.688 bits (400), Expect = 2.041e-38
Identity = 74/98 (75.51%), Postives = 87/98 (88.78%), Query Frame = 3

Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPS ++QQWQE+ +GFFSSSG KL+EA QTAG+FVGEVAKDAK NV DVAERVGS+ K+RWA L+QPATRHAVQE LI+AAATTGT +RKGIT TK++
Sbjct:    1 MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITAAATTGTLVRKGITETKEK 98

HSP 3 Score: 151.754 bits (382), Expect = 4.461e-36
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 1

Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MD+ SLAMEMAPVIMW++D +PESYR+YW  P +SP K +   T T   WD+L D+GE  DASS IPLDD + VDFGA+EV+QCLIE HN IFTDA ETVWR
Sbjct:  277 MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETAT--PWDLLSDEGEGPDASSSIPLDDIVQVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: A0A067JSD0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26285 PE=4 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 5.987e-82
Identity = 135/170 (79.41%), Postives = 155/170 (91.18%), Query Frame = 1

Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            + AKKTAQKSKTI+TDIERWQKG+ASTDVFGVPIEVTVQRQ++   +P ILV+CADYLILSG+NS  LFKAEG+KKVI+ LVS YNQD NAS+PEGVNP+DVAAL K Y+ASLPEPLTTFELY+EIK ARSSI+AM+N+LK LP+VNYMTLE ITALLLRVSQKS+LNK+
Sbjct:  108 EAAKKTAQKSKTIITDIERWQKGIASTDVFGVPIEVTVQRQRSSSLVPHILVKCADYLILSGLNSMDLFKAEGEKKVIQHLVSVYNQDSNASLPEGVNPLDVAALIKCYLASLPEPLTTFELYNEIKGARSSIYAMKNILKKLPTVNYMTLELITALLLRVSQKSLLNKM 277

HSP 2 Score: 181.03 bits (458), Expect = 3.778e-46
Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = 1

Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MDARSLAME+APV+MWQK++KPE YR+YWS   ++P K S D  P YSAWDML D+GED+DASS IPLDDG PVDF AIEVIQCLIEQHN IFTDANETVWR
Sbjct:  277 MDARSLAMEIAPVVMWQKEQKPEFYRQYWSQASRNPPKRSRDPAPNYSAWDMLSDEGEDLDASSPIPLDDGTPVDFSAIEVIQCLIEQHNTIFTDANETVWR 378

HSP 3 Score: 153.68 bits (387), Expect = 1.011e-36
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 3

Query:  324 MPSAVTQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            MPSA + QWQEKAT FFSSSG KLKEA Q+AGT+VG VAKDA+GNV D AER GS VK+RWAFLR+P+TRH +QE+LI+AAATTG FLRKG++ TKD+
Sbjct:    1 MPSAGSPQWQEKATVFFSSSGTKLKEAGQSAGTYVGGVAKDARGNVADAAERFGSAVKSRWAFLREPSTRHVLQENLITAAATTGMFLRKGLSDTKDK 98

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Match: F4K3I7_ARATH (Uncharacterized Rho GTPase-activating protein OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.015e-81
Identity = 135/170 (79.41%), Postives = 154/170 (90.59%), Query Frame = 1

Query: 1294 QVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEGDKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSIHAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKV 1803
            + AKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQRQ++ +PIPLILV+CADYLIL+G+NS  LFKAEGD+K+I+QLVSAYNQD  ASIPEGVNP+DVAAL KYY+ASLP PLTTFELY+EIK ARSSIH MR  L+ L +VNY TLEFITALLLRVSQKS+LNK+
Sbjct:  108 EAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKM 277

HSP 2 Score: 149.828 bits (377), Expect = 2.174e-35
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1

Query: 2212 MDARSLAMEMAPVIMWQKDRKPESYRKYWSHPPKSPSKGSMDSTPTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQCLIEQHNPIFTDANETVWR 2517
            MD+ SLAMEMAPVIMW++D +PESYR+YW  P +SP K +   T T   WD+L D+GE  DASS IPLDD   VDFGA+EV+QCLIE HN IFTDA ETVWR
Sbjct:  277 MDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETAT--PWDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376

HSP 3 Score: 126.716 bits (317), Expect = 1.092e-27
Identity = 61/78 (78.21%), Postives = 70/78 (89.74%), Query Frame = 3

Query:  384 GVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNRWAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDR 617
            G KL+EA QTAG+FVGEVAKDAK NV DVAERVGS+ K+RWA L+QPATRHAVQE LI+AAATTGTF+RKGIT TK++
Sbjct:   21 GTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEK 98

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
RGAPX_ARATH	7.537e-84	79.41	Uncharacterized Rho GTPase-activating protein At5g...	[more]
GACJJ_DICDI	4.148e-14	33.33	Rho GTPase-activating protein gacJJ OS=Dictyosteli...	[more]
RHG35_RAT	6.433e-14	27.27	Rho GTPase-activating protein 35 OS=Rattus norvegi...	[more]
RHG35_HUMAN	2.035e-13	26.62	Rho GTPase-activating protein 35 OS=Homo sapiens G...	[more]
RHG35_MOUSE	2.105e-13	26.62	Rho GTPase-activating protein 35 OS=Mus musculus G...	[more]
RHG35_CANFA	2.716e-13	26.62	Rho GTPase-activating protein 35 OS=Canis familiar...	[more]
RHG05_MOUSE	4.210e-12	29.80	Rho GTPase-activating protein 5 OS=Mus musculus GN...	[more]
RG68F_DROME	4.901e-12	32.10	Rho GTPase-activating protein 68F OS=Drosophila me...	[more]
RHG05_HUMAN	1.392e-11	29.14	Rho GTPase-activating protein 5 OS=Homo sapiens GN...	[more]
RHG25_MOUSE	2.044e-10	25.99	Rho GTPase-activating protein 25 OS=Mus musculus G...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0094274 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
V7AJZ1_PHAVU	1.377e-82	80.00	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
C6T8Q7_SOYBN	1.720e-82	79.41	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7MV30_ARALL	3.071e-82	79.41	Small G protein family protein OS=Arabidopsis lyra...	[more]
A0A067JSD0_JATCU	5.987e-82	79.41	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
F4K3I7_ARATH	1.015e-81	79.41	Uncharacterized Rho GTPase-activating protein OS=A...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000198	Rho GTPase-activating protein domain	SMART	SM00324	RhoGAP_3	coord: 32..178 e-value: 4.6E-13 score: 59.4
IPR000198	Rho GTPase-activating protein domain	PFAM	PF00620	RhoGAP	coord: 35..174 e-value: 5.1E-25 score: 87.9
IPR000198	Rho GTPase-activating protein domain	GENE3D	1.10.555.10		coord: 5..174 e-value: 5.6E-35 score: 120.0
IPR000198	Rho GTPase-activating protein domain	PROSITE	PS50238	RHOGAP	coord: 19..183 score: 26.256
None	No IPR available	PANTHER	PTHR23176	RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN	coord: 1..157
None	No IPR available	PANTHER	PTHR23176:SF32	SUBFAMILY NOT NAMED	coord: 1..157
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 146..156
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 126..145
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 157..178
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..125
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 179..183
None	No IPR available	TMHMM	TMhelix		coord: 157..176
IPR008936	Rho GTPase activation protein	SUPERFAMILY	48350	GTPase activation domain, GAP	coord: 14..174

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0094274 ID=g.barbadense_cottongen_reftransV1_0094274; Name=g.barbadense_cottongen_reftransV1_0094274; organism=Gossypium barbadense; type=contig; length=2888bp
TTTTAAATTGAACTTAATATTAAAATTGAACTGTTACAGCTATAAAAAGA
AAAGTAGCACTTTCGACTTTCGCTATCACCTACCGATTCATCTAGCCAAA
AAGAAAAGTTCGTCTTTGATCGTTGCTTCATTTAAGCAACACCAAAAGGT
AAGTATTTTTTTTTTCAGTTTTCCGTCAAAAATTAGGGCTCTGTATCGAT
CATTTATTTTTTTGATCACTAAAAACGATTATGTATCAATTCAATATCGC
TTATTTTCTCCCAAGTTTCAAATCTTTGCTTTTTTGGTAGTTCCTTTTTT
TCGGTTTGCGTTAATCGGAAGCGATGCCTTCAGCTGTAACGCAGCAGTGG
CAAGAGAAGGCGACTGGTTTTTTTTCTTCCTCAGGGGTGAAGCTGAAGGA
AGCTAGCCAAACCGCCGGCACGTTTGTTGGAGAAGTTGCAAAGGATGCCA
AAGGCAACGTCACTGACGTGGCGGAACGAGTTGGTTCCATGGTCAAAAAC
CGATGGGCGTTTCTCCGGCAGCCAGCGACAAGACATGCTGTGCAAGAGAG
TCTTATATCGGCTGCTGCAACGACCGGAACCTTTTTGAGGAAAGGCATCA
CCGGGACTAAAGACAGGGTTGTTGTTGGGAAAACAAAAGTTGAAGAGGTA
AAAAGAAAAGAATCTCTAAGAGTAACTTTAATTGATCCCTTTTTAATAAA
AAGGATCTTACGGACTATTATATATGTTGTTCAACGTATTAATAATCAAT
TACATCGTGAGAGAGGATGGGCTACCATTTAAATTTTGATGTTTCCTGTA
GCATTTGATATATCTGCCTATAGTGTTATGCCACTGGAATCTTATTCCGT
GCTTGACCAATTATTCTTAATTGTGATTGTTTGTTTTTTAGACTCTGTTT
CTTTTCTGTCTAATTTCCTGCTTTGTAGATTGCCTTTCATTCGGTTCTTT
ACTCTGATAGGTTAAGCTTGTGCTGTTATCAAAATTTTGTACACCACGGA
AAGGGTTTTAGTTGCTTCTTCTTTTTCCATTGGGTATTATTACTTGATTC
ACTTCTCTTATTGCAGAACTATCAAGGTTTCAAGTAACTAGTGAATTTCG
GACCTCTCTATCCATTCGTGTTATTATGATATTTGTTGATGTTACAGTTG
ACCTTGTATAATTAAGAATGCAATATATTGATGCTTAAACAAGGCATTGA
TGTAACTATTTTTTGTCTTACAGACTAGGCTAACCTAGGCCTCTACAGAA
ATCATGGTAAAAAATGACTTATATGTAATGGTGAATTTGTTTACAGGTGG
CAAAAAAGACTGCACAGAAAAGCAAGACAATTTTGACAGATATAGAACGA
TGGCAGAAGGGTGTTGCCAGCACTGATGTATTTGGAGTTCCTATTGAGGT
TACTGTGCAGCGGCAGCAAGCCATCAAGCCCATCCCTCTTATATTGGTGA
GATGTGCAGATTATCTCATATTATCAGGTATAAATTCTCAATACTTGTTT
AAAGCTGAAGGAGATAAGAAGGTCATTGAGCAATTGGTTTCTGCATACAA
CCAAGATTTTAATGCCTCCATACCAGAGGGTGTGAATCCAATTGATGTAG
CAGCTCTAGCCAAATATTATATTGCTAGTCTTCCTGAGCCATTGACCACC
TTTGAGCTTTATGATGAGATCAAAAGTGCCCGTTCTAGCATACATGCTAT
GAGGAATGTACTAAAAATGCTTCCTAGTGTAAATTACATGACTCTTGAGT
TCATCACTGCATTGCTGCTTCGTGTTAGCCAGAAATCAGTCCTTAACAAA
GTAGGAGTTATCTGTTTCTCTCTCTCTATCTGTCTGTTTATCTCTTTGCT
TTCATGCATTTCATTTAAAGGTGGTTTCGAGTAAGGTTGGATATAATTGT
GAAAGCTTATATTTCTCCACATATGTGAGTTGCCATTCAGACCTGATGAA
TTTCTATATTGCCTTGTACTGATGGGCTAAAGCTAACTTGATGATCAAAA
TGATCTCTGTTTCGTGGAAAATTTATCTCTCTGAGGTCATTGTTAGCATC
TTTTTATTAGTCTTATGAACAAAATACCTATATAAATAAAGCAATTTCCT
GGTTTCTTCACTTCCCCATCCCTCCAAACAGTTGTCTTGCAGTTATGTGC
TTATTATTATCTGATAGACAAGTTGTACCTTTAACAATGTTTTATTGTTA
TCTTCCAATAGATGGATGCACGAAGCCTTGCCATGGAAATGGCCCCTGTT
ATTATGTGGCAGAAGGATAGAAAACCAGAATCTTATAGGAAATACTGGAG
CCATCCACCCAAAAGTCCTTCTAAGGGTAGCATGGATTCAACCCCTACTT
ATAGTGCATGGGACATGCTTGAAGATGATGGAGAAGATATGGATGCTTCC
TCCCACATTCCTTTGGATGATGGTATCCCGGTTGATTTTGGTGCCATTGA
GGTCATTCAATGCCTCATAGAACAACACAATCCCATATTTACAGACGCTA
ATGAGACAGTCTGGAGATGACCGAGACTAGATGATTCCTTGTGGGCAGCC
AAGTCAATCATATCCGGGAAAAAGACGAGGACAGAGTAAATATATAAATT
CTTTGAAGGTCTATTTGCCACCTGTTTTGTAACTTTTAACAGAAATAAAG
GCAAATTGGCAATAGTGAATATTTTCACATGAACAAGTTGACACTTACAA
GAATCCTCTGCAAATGCGTTTCACATAAAGTTTTAAATTGCATCACTCTT
GCTTATTCTCATATTTGGGTTTGACATAGTGTAATGGCAAGTAATGCTAC
TTTGACTGAGGTGTAATTATAGGACTTGTAAATGTGTAATTATAAATTTT
AATTTTCTATTAAAAATAGTAATTTGACTAAATGTGTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000198	RhoGAP_dom
IPR008936	Rho_GTPase_activation_prot

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

Search form

g.barbadense_cottongen_reftransV1_0094274, g.barbadense_cottongen_reftransV1_0094274 (contig) Gossypium barbadense

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