g.barbadense_cottongen_reftransV1_0094272, g.barbadense_cottongen_reftransV1_0094272 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: V7BDV9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G123200g PE=4 SV=1) HSP 1 Score: 271.166 bits (692), Expect = 3.220e-72 Identity = 135/213 (63.38%), Postives = 158/213 (74.18%), Query Frame = -3 Query: 1 SLYSIVAEHGSSTNKVHAPARRLSRFYLHACKANTQDKRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHAIGEMQLFSEGS------------------------DDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXXXXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAVL 567 S+YS++AEHGSS+NKVHAPARRLSRFY HAC+ + ASAA++A+SG VLVSKACGNDVPRLTFW SN ++LRA VS + + F +GS W DP+TFL+AL+K EAWIFSRIVESVWWQTLTPYMQSAAAKSS SKK RR +GD +QGSFSV+LWK+AFKDACERLCP+R GHECGCLAV+ Sbjct: 1098 SMYSVIAEHGSSSNKVHAPARRLSRFYFHACRVGSPATIASAAQSAVSGFVLVSKACGNDVPRLTFWFSNLLLLRAIVSKEVENIP-FGDGSCINSECDAVGNTLHEEEKDKEKQFHSWEDPKTFLIALEKVEAWIFSRIVESVWWQTLTPYMQSAAAKSSNSKKVDERRPRVGDPDQGSFSVDLWKRAFKDACERLCPVRTGGHECGCLAVI 1309 HSP 2 Score: 182.185 bits (461), Expect = 1.102e-43 Identity = 116/202 (57.43%), Postives = 149/202 (73.76%), Query Frame = -3 Query: 1621 MVLGLRTKNRKGNSYQVYYIVYVKEINPWTXXXXXXXXXXXXXQWENGDKNSGSSVSSFRNGKIEFGESFRLQVTLSLESSRKSTNRDGFQKNCLEFYLYEPRKDKVAKGQLLGSAVVNLADYGIIRETISISTPINLKKSSRNIEQPVLYLTIQPFDXXXXXXXXXXSLPKEVSLEKDGSESVSGSINEGNDEETEIASFT 2226 MVLG+R+K+RK S QV+Y ++V+EINPW P QSL + Q++LLQWENGD+ SGS S+ GKI+F ESFRL V + E+S+KS +R+ FQKN LEF LY DK K QLLGSA VN AD+GII+ET ++S +N KKSS+N QP LY++IQPFD SSSS SL K +SL+K+GSESVS S+ + D++ EI SFT Sbjct: 1 MVLGIRSKSRKTVSVQVHYTIHVQEINPWPPSQSLRSVQTVLLQWENGDQISGSLASTAGIGKIQFNESFRLSVLMWREASKKSKHRESFQKNYLEFSLY----DKTTKSQLLGSATVNFADFGIIKETKALSIVLNCKKSSKNSSQPFLYISIQPFDTECSSSSPSSSLSKGLSLDKEGSESVSQSLKD--DDDVEIVSFT 196
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: M1B765_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014918 PE=4 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 3.521e-71 Identity = 136/229 (59.39%), Postives = 161/229 (70.31%), Query Frame = -3 Query: 4 SLYSIVAEHGSSTNKVHAPARRLSRFYLHACKANTQDKRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHA---------------IGEMQL--------------------FSEGSDDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXX------XXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAV 567 SLYS+VAEHGSS +KVHAPARRLSRFY+HAC+A ++ K+A AARA++SGLVLVSKACGNDVPRLTFWLSNS++LRA VS A +G+ L +E DW D +TF+LAL++ EAWIFSRIVESVWWQTLTP+MQ+ AA SS KK RR LGD EQG+FS++LWKKAFKDACERLCP+RA GHECGCL + Sbjct: 542 SLYSVVAEHGSSAHKVHAPARRLSRFYVHACRAKSRAKQAGAARASVSGLVLVSKACGNDVPRLTFWLSNSVMLRAIVSQAAGGRREDDRPYAESNMGKTSLNGRSLKKRNEVSFNKAVNDSLTEELGDWEDIETFMLALEQVEAWIFSRIVESVWWQTLTPHMQNTAANSGGRSMSSSVKKTYGRRCSLGDQEQGNFSIDLWKKAFKDACERLCPVRAGGHECGCLPL 770 HSP 2 Score: 182.185 bits (461), Expect = 6.566e-44 Identity = 111/202 (54.95%), Postives = 146/202 (72.28%), Query Frame = -3 Query: 1621 MVLGLRTKNRKGNSYQVYYIVYVKEINPWTXXXXXXXXXXXXXQWENGDKNSGSSVSSFRNGKIEFGESFRLQVTLSLESSRKSTNRDGFQKNCLEFYLYEPRKDKVAKGQLLGSAVVNLADYGIIRETISISTPINLKKSSRNIEQPVLYLTIQPFDXXXXXXXXXXSLPKEVSLEKDGSESVSGSINEGNDEETEIASFT 2226 MVLGLR+K++KG S QV Y++ V EI PW P QSL + QS+LLQWEN +NSGS VS+ +G IEF +SF L +TL R+ D FQKN L+FYLYE RKDK +GQLLG++V+NLAD+G+I E +SI TP++ KKSS+N EQP L+++I P ++GSSSSS G V+ E DG ESV S+N N+++ +IASFT Sbjct: 1 MVLGLRSKHKKGASVQVEYVIQVDEIKPWPPSQSLKSVQSVLLQWENDGQNSGSVVSTVGDGTIEFKDSFTLSLTLC----REKKAHDKFQKNFLDFYLYELRKDKTTRGQLLGTSVINLADFGLIEEVVSIYTPVSCKKSSKNSEQPALFVSIHPTERGSSSSSQVG-----VTREGDGQESVVDSVNGRNEDDDDIASFT 193
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: Q9FHS2_ARATH (Gb|AAF03435.1 OS=Arabidopsis thaliana GN=At5g43230 PE=4 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 7.918e-71 Identity = 125/193 (64.77%), Postives = 156/193 (80.83%), Query Frame = -3 Query: 1 SLYSIVAEHGSSTNKVHAPARRLSRFYLHACKANTQD--KRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHAIGEMQLFSE--GSDDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXXXXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAVL 567 ++YS+VAEH SS +KVHAPARRL+RFYLHACK N D KRA+AARAA+SGL+LVSKACGNDVPRLTFWLSNSIVLRA +S + +M++ E GSD+W DP+ FL AL+KFE+WIFSR+V+SVWWQ++TP+MQS A K S ++K S +R LG QG +++ELWK AF+ ACERLCP+R ECGCL +L Sbjct: 164 AIYSVVAEHTSSMSKVHAPARRLARFYLHACKGNGSDHSKRATAARAAVSGLILVSKACGNDVPRLTFWLSNSIVLRAILSRGMEKMKIVPEKAGSDEWEDPRAFLAALEKFESWIFSRVVKSVWWQSMTPHMQSPAVKGSIARKVSGKRR-LGHRNQGLYAIELWKNAFRAACERLCPLRGSRQECGCLPML 355
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: F4K4M9_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At5g43230 PE=4 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 9.423e-70 Identity = 125/193 (64.77%), Postives = 156/193 (80.83%), Query Frame = -3 Query: 1 SLYSIVAEHGSSTNKVHAPARRLSRFYLHACKANTQD--KRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHAIGEMQLFSE--GSDDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXXXXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAVL 567 ++YS+VAEH SS +KVHAPARRL+RFYLHACK N D KRA+AARAA+SGL+LVSKACGNDVPRLTFWLSNSIVLRA +S + +M++ E GSD+W DP+ FL AL+KFE+WIFSR+V+SVWWQ++TP+MQS A K S ++K S +R LG QG +++ELWK AF+ ACERLCP+R ECGCL +L Sbjct: 384 AIYSVVAEHTSSMSKVHAPARRLARFYLHACKGNGSDHSKRATAARAAVSGLILVSKACGNDVPRLTFWLSNSIVLRAILSRGMEKMKIVPEKAGSDEWEDPRAFLAALEKFESWIFSRVVKSVWWQSMTPHMQSPAVKGSIARKVSGKRR-LGHRNQGLYAIELWKNAFRAACERLCPLRGSRQECGCLPML 575 HSP 2 Score: 114.005 bits (284), Expect = 1.390e-22 Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = -3 Query: 1759 MVLGLRTKNRKGNSYQVYYIVYVKEINPWTXXXXXXXXXXXXXQWENGDKNSGSSVSSFRNGKIEFGESFRLQVTLSLESSRKSTNRDGFQKNCLEFYLYEPRKDKVAKGQ-LLGSAVVNLADYGIIRETISISTPINLKKSSRNIEQPVLYLTIQP 2226 MVLGLRTK+R+ N V Y++ +KE+ PW Q L WENG+ NSGS ++ I F ESFRL TL+LE S N+ F KN LE ++Y+ +K LLG+A VNLAD+G++ ++ + P KKSSRN +YLT++P Sbjct: 1 MVLGLRTKSRRDNGVFVEYLISIKELKPWPTSQVPAQCVLLK--WENGENNSGSFIAVVGKDTIMFNESFRL--TLTLEPKVGSDNK--FHKNLLELHVYDAKKKDKGVKNKLLGTASVNLADFGLLTNSVPVGAPFTFKKSSRNDASSEIYLTVEP 151
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: A0A078HYJ5_BRANA (BnaC09g17390D protein OS=Brassica napus GN=BnaC09g17390D PE=4 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 1.056e-69 Identity = 129/193 (66.84%), Postives = 154/193 (79.79%), Query Frame = -3 Query: 1 LYSIVAEHGSSTNKVHAPARRLSRFYLHACKAN---TQDKRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHAIGEMQLFS--EGSDDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXXXXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAVL 564 +YS+VAEH SS +KVHAPARRL+RFYLHACK N KRA AARAA+SGL+LVSKACGND+PRLTFWLSNSIVLRAT+S I ++ L S GSD+W DP+ FL AL+KFE+WIFSR+V+SVWWQ++TPYMQSAA K S S+K S +R LG QG +++ELWK AFK ACERLCP+R ECGCL +L Sbjct: 385 VYSVVAEHSSSMSKVHAPARRLARFYLHACKGNGGSDHSKRACAARAAVSGLILVSKACGNDIPRLTFWLSNSIVLRATLSRGIEKLNLVSIKLGSDEWEDPRAFLAALEKFESWIFSRVVKSVWWQSMTPYMQSAAVKGSMSRKVSGKRR-LGHKNQGLYAIELWKSAFKAACERLCPLRGSRQECGCLPML 576 HSP 2 Score: 116.316 bits (290), Expect = 2.515e-23 Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = -3 Query: 1645 MVLGLRTKNRKGNSYQVYYIVYVKEINPWTXXXXXXXXXXXXXQWENGDKNSGSSVSSFRNGKIEFGESFRLQVTLSLESSRKSTNRDGFQKNCLEFYLYEPRKDKVAKGQ-LLGSAVVNLADYGIIRETISISTPINLKKSSRNIEQPVLYLTIQPFDXXXXXXXXXXSLPK-EVSLEKDGSESVSGSINEGNDE 2226 MVLGLRTK+R+ N V Y++ +KE+ PW Q L W+NG+ + GS ++ I F ESFRL TL+LE K + F KN LE ++Y+ +K LLGSAVVNL+DYG++ + + P KKSSRN +YLTI+P SS S PK S++K+GSE S+ + +D+ Sbjct: 1 MVLGLRTKSRRDNGVFVEYLISIKELKPWPMSQVPVQCVLLK--WQNGENSLGSFIAVVGKDTIMFNESFRL--TLTLEP--KGVDEKKFHKNLLELHVYDAKKKDKGVKNKLLGSAVVNLSDYGVLTNLVPVGAPFTFKKSSRNDANSEIYLTIEPAGDDDGYRSSSSSQPKMRGSVDKEGSEFSLASLTDDDDD 190 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094272 ID=g.barbadense_cottongen_reftransV1_0094272; Name=g.barbadense_cottongen_reftransV1_0094272; organism=Gossypium barbadense; type=contig; length=2630bpback to top |