g.barbadense_cottongen_reftransV1_0094272, g.barbadense_cottongen_reftransV1_0094272 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094272
Unique Nameg.barbadense_cottongen_reftransV1_0094272
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2630
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: V7BDV9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G123200g PE=4 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.220e-72
Identity = 135/213 (63.38%), Postives = 158/213 (74.18%), Query Frame = -3
Query:    1 SLYSIVAEHGSSTNKVHAPARRLSRFYLHACKANTQDKRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHAIGEMQLFSEGS------------------------DDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXXXXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAVL 567
            S+YS++AEHGSS+NKVHAPARRLSRFY HAC+  +    ASAA++A+SG VLVSKACGNDVPRLTFW SN ++LRA VS  +  +  F +GS                          W DP+TFL+AL+K EAWIFSRIVESVWWQTLTPYMQSAAAKSS SKK   RR  +GD +QGSFSV+LWK+AFKDACERLCP+R  GHECGCLAV+
Sbjct: 1098 SMYSVIAEHGSSSNKVHAPARRLSRFYFHACRVGSPATIASAAQSAVSGFVLVSKACGNDVPRLTFWFSNLLLLRAIVSKEVENIP-FGDGSCINSECDAVGNTLHEEEKDKEKQFHSWEDPKTFLIALEKVEAWIFSRIVESVWWQTLTPYMQSAAAKSSNSKKVDERRPRVGDPDQGSFSVDLWKRAFKDACERLCPVRTGGHECGCLAVI 1309          

HSP 2 Score: 182.185 bits (461), Expect = 1.102e-43
Identity = 116/202 (57.43%), Postives = 149/202 (73.76%), Query Frame = -3
Query: 1621 MVLGLRTKNRKGNSYQVYYIVYVKEINPWTXXXXXXXXXXXXXQWENGDKNSGSSVSSFRNGKIEFGESFRLQVTLSLESSRKSTNRDGFQKNCLEFYLYEPRKDKVAKGQLLGSAVVNLADYGIIRETISISTPINLKKSSRNIEQPVLYLTIQPFDXXXXXXXXXXSLPKEVSLEKDGSESVSGSINEGNDEETEIASFT 2226
            MVLG+R+K+RK  S QV+Y ++V+EINPW P QSL + Q++LLQWENGD+ SGS  S+   GKI+F ESFRL V +  E+S+KS +R+ FQKN LEF LY    DK  K QLLGSA VN AD+GII+ET ++S  +N KKSS+N  QP LY++IQPFD   SSSS   SL K +SL+K+GSESVS S+ +  D++ EI SFT
Sbjct:    1 MVLGIRSKSRKTVSVQVHYTIHVQEINPWPPSQSLRSVQTVLLQWENGDQISGSLASTAGIGKIQFNESFRLSVLMWREASKKSKHRESFQKNYLEFSLY----DKTTKSQLLGSATVNFADFGIIKETKALSIVLNCKKSSKNSSQPFLYISIQPFDTECSSSSPSSSLSKGLSLDKEGSESVSQSLKD--DDDVEIVSFT 196          
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: M1B765_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014918 PE=4 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.521e-71
Identity = 136/229 (59.39%), Postives = 161/229 (70.31%), Query Frame = -3
Query:    4 SLYSIVAEHGSSTNKVHAPARRLSRFYLHACKANTQDKRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHA---------------IGEMQL--------------------FSEGSDDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXX------XXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAV 567
            SLYS+VAEHGSS +KVHAPARRLSRFY+HAC+A ++ K+A AARA++SGLVLVSKACGNDVPRLTFWLSNS++LRA VS A               +G+  L                     +E   DW D +TF+LAL++ EAWIFSRIVESVWWQTLTP+MQ+ AA       SS  KK   RR  LGD EQG+FS++LWKKAFKDACERLCP+RA GHECGCL +
Sbjct:  542 SLYSVVAEHGSSAHKVHAPARRLSRFYVHACRAKSRAKQAGAARASVSGLVLVSKACGNDVPRLTFWLSNSVMLRAIVSQAAGGRREDDRPYAESNMGKTSLNGRSLKKRNEVSFNKAVNDSLTEELGDWEDIETFMLALEQVEAWIFSRIVESVWWQTLTPHMQNTAANSGGRSMSSSVKKTYGRRCSLGDQEQGNFSIDLWKKAFKDACERLCPVRAGGHECGCLPL 770          

HSP 2 Score: 182.185 bits (461), Expect = 6.566e-44
Identity = 111/202 (54.95%), Postives = 146/202 (72.28%), Query Frame = -3
Query: 1621 MVLGLRTKNRKGNSYQVYYIVYVKEINPWTXXXXXXXXXXXXXQWENGDKNSGSSVSSFRNGKIEFGESFRLQVTLSLESSRKSTNRDGFQKNCLEFYLYEPRKDKVAKGQLLGSAVVNLADYGIIRETISISTPINLKKSSRNIEQPVLYLTIQPFDXXXXXXXXXXSLPKEVSLEKDGSESVSGSINEGNDEETEIASFT 2226
            MVLGLR+K++KG S QV Y++ V EI PW P QSL + QS+LLQWEN  +NSGS VS+  +G IEF +SF L +TL     R+    D FQKN L+FYLYE RKDK  +GQLLG++V+NLAD+G+I E +SI TP++ KKSS+N EQP L+++I P ++GSSSSS  G     V+ E DG ESV  S+N  N+++ +IASFT
Sbjct:    1 MVLGLRSKHKKGASVQVEYVIQVDEIKPWPPSQSLKSVQSVLLQWENDGQNSGSVVSTVGDGTIEFKDSFTLSLTLC----REKKAHDKFQKNFLDFYLYELRKDKTTRGQLLGTSVINLADFGLIEEVVSIYTPVSCKKSSKNSEQPALFVSIHPTERGSSSSSQVG-----VTREGDGQESVVDSVNGRNEDDDDIASFT 193          
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: Q9FHS2_ARATH (Gb|AAF03435.1 OS=Arabidopsis thaliana GN=At5g43230 PE=4 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 7.918e-71
Identity = 125/193 (64.77%), Postives = 156/193 (80.83%), Query Frame = -3
Query:    1 SLYSIVAEHGSSTNKVHAPARRLSRFYLHACKANTQD--KRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHAIGEMQLFSE--GSDDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXXXXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAVL 567
            ++YS+VAEH SS +KVHAPARRL+RFYLHACK N  D  KRA+AARAA+SGL+LVSKACGNDVPRLTFWLSNSIVLRA +S  + +M++  E  GSD+W DP+ FL AL+KFE+WIFSR+V+SVWWQ++TP+MQS A K S ++K S +R  LG   QG +++ELWK AF+ ACERLCP+R    ECGCL +L
Sbjct:  164 AIYSVVAEHTSSMSKVHAPARRLARFYLHACKGNGSDHSKRATAARAAVSGLILVSKACGNDVPRLTFWLSNSIVLRAILSRGMEKMKIVPEKAGSDEWEDPRAFLAALEKFESWIFSRVVKSVWWQSMTPHMQSPAVKGSIARKVSGKRR-LGHRNQGLYAIELWKNAFRAACERLCPLRGSRQECGCLPML 355          
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: F4K4M9_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At5g43230 PE=4 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 9.423e-70
Identity = 125/193 (64.77%), Postives = 156/193 (80.83%), Query Frame = -3
Query:    1 SLYSIVAEHGSSTNKVHAPARRLSRFYLHACKANTQD--KRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHAIGEMQLFSE--GSDDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXXXXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAVL 567
            ++YS+VAEH SS +KVHAPARRL+RFYLHACK N  D  KRA+AARAA+SGL+LVSKACGNDVPRLTFWLSNSIVLRA +S  + +M++  E  GSD+W DP+ FL AL+KFE+WIFSR+V+SVWWQ++TP+MQS A K S ++K S +R  LG   QG +++ELWK AF+ ACERLCP+R    ECGCL +L
Sbjct:  384 AIYSVVAEHTSSMSKVHAPARRLARFYLHACKGNGSDHSKRATAARAAVSGLILVSKACGNDVPRLTFWLSNSIVLRAILSRGMEKMKIVPEKAGSDEWEDPRAFLAALEKFESWIFSRVVKSVWWQSMTPHMQSPAVKGSIARKVSGKRR-LGHRNQGLYAIELWKNAFRAACERLCPLRGSRQECGCLPML 575          

HSP 2 Score: 114.005 bits (284), Expect = 1.390e-22
Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = -3
Query: 1759 MVLGLRTKNRKGNSYQVYYIVYVKEINPWTXXXXXXXXXXXXXQWENGDKNSGSSVSSFRNGKIEFGESFRLQVTLSLESSRKSTNRDGFQKNCLEFYLYEPRKDKVAKGQ-LLGSAVVNLADYGIIRETISISTPINLKKSSRNIEQPVLYLTIQP 2226
            MVLGLRTK+R+ N   V Y++ +KE+ PW   Q       L   WENG+ NSGS ++      I F ESFRL  TL+LE    S N+  F KN LE ++Y+ +K        LLG+A VNLAD+G++  ++ +  P   KKSSRN     +YLT++P
Sbjct:    1 MVLGLRTKSRRDNGVFVEYLISIKELKPWPTSQVPAQCVLLK--WENGENNSGSFIAVVGKDTIMFNESFRL--TLTLEPKVGSDNK--FHKNLLELHVYDAKKKDKGVKNKLLGTASVNLADFGLLTNSVPVGAPFTFKKSSRNDASSEIYLTVEP 151          
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Match: A0A078HYJ5_BRANA (BnaC09g17390D protein OS=Brassica napus GN=BnaC09g17390D PE=4 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.056e-69
Identity = 129/193 (66.84%), Postives = 154/193 (79.79%), Query Frame = -3
Query:    1 LYSIVAEHGSSTNKVHAPARRLSRFYLHACKAN---TQDKRASAARAAISGLVLVSKACGNDVPRLTFWLSNSIVLRATVSHAIGEMQLFS--EGSDDWVDPQTFLLALQKFEAWIFSRIVESVWWQTLTPYMQXXXXXXXXXXXXXSRRYGLGDLEQGSFSVELWKKAFKDACERLCPIRACGHECGCLAVL 564
            +YS+VAEH SS +KVHAPARRL+RFYLHACK N      KRA AARAA+SGL+LVSKACGND+PRLTFWLSNSIVLRAT+S  I ++ L S   GSD+W DP+ FL AL+KFE+WIFSR+V+SVWWQ++TPYMQSAA K S S+K S +R  LG   QG +++ELWK AFK ACERLCP+R    ECGCL +L
Sbjct:  385 VYSVVAEHSSSMSKVHAPARRLARFYLHACKGNGGSDHSKRACAARAAVSGLILVSKACGNDIPRLTFWLSNSIVLRATLSRGIEKLNLVSIKLGSDEWEDPRAFLAALEKFESWIFSRVVKSVWWQSMTPYMQSAAVKGSMSRKVSGKRR-LGHKNQGLYAIELWKSAFKAACERLCPLRGSRQECGCLPML 576          

HSP 2 Score: 116.316 bits (290), Expect = 2.515e-23
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = -3
Query: 1645 MVLGLRTKNRKGNSYQVYYIVYVKEINPWTXXXXXXXXXXXXXQWENGDKNSGSSVSSFRNGKIEFGESFRLQVTLSLESSRKSTNRDGFQKNCLEFYLYEPRKDKVAKGQ-LLGSAVVNLADYGIIRETISISTPINLKKSSRNIEQPVLYLTIQPFDXXXXXXXXXXSLPK-EVSLEKDGSESVSGSINEGNDE 2226
            MVLGLRTK+R+ N   V Y++ +KE+ PW   Q       L   W+NG+ + GS ++      I F ESFRL  TL+LE   K  +   F KN LE ++Y+ +K        LLGSAVVNL+DYG++   + +  P   KKSSRN     +YLTI+P        SS  S PK   S++K+GSE    S+ + +D+
Sbjct:    1 MVLGLRTKSRRDNGVFVEYLISIKELKPWPMSQVPVQCVLLK--WQNGENSLGSFIAVVGKDTIMFNESFRL--TLTLEP--KGVDEKKFHKNLLELHVYDAKKKDKGVKNKLLGSAVVNLSDYGVLTNLVPVGAPFTFKKSSRNDANSEIYLTIEPAGDDDGYRSSSSSQPKMRGSVDKEGSEFSLASLTDDDDD 190          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0094272 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7BDV9_PHAVU3.220e-7263.38Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
M1B765_SOLTU3.521e-7159.39Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
Q9FHS2_ARATH7.918e-7164.77Gb|AAF03435.1 OS=Arabidopsis thaliana GN=At5g43230... [more]
F4K4M9_ARATH9.423e-7064.77Uncharacterized protein OS=Arabidopsis thaliana GN... [more]
A0A078HYJ5_BRANA1.056e-6966.84BnaC09g17390D protein OS=Brassica napus GN=BnaC09g... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094272 ID=g.barbadense_cottongen_reftransV1_0094272; Name=g.barbadense_cottongen_reftransV1_0094272; organism=Gossypium barbadense; type=contig; length=2630bp
CAGCACAGCTAAGCAGCCACATTCGTGCCCACATGCTCGAATGGGACAAA
GCCTCTCACAGGCATCTTTAAAAGCCTTCTTCCAAAGCTCAACTGAAAAA
CTCCCCTGCTCTAGATCACCTAATCCATATCTTCTGCTAGAGTTTTTCTT
CGAGCATGAGCTCTTTGCAGCAGCAGACTGCATATATGGAGTCAAAGTCT
GCCACCACACAGACTCGACAATTCTGGAGAAGATCCAAGCTTCAAACTTT
TGCAGTGCAAGTAAAAATGTCTGAGGGTCCACCCAGTCATCAGAACCTTC
CGAAAATAGCTGCATTTCACCAATTGCGTGGCTAACAGTTGCTCTCAATA
CAATTGAATTTGATAACCAGAAGGTTAACCTTGGAACATCATTTCCACAT
GCTTTAGAGACCAATACCAATCCTGAAATTGCAGCCCTTGCAGCACTTGC
CCTCTTATCTTGGGTATTTGCTTTACAAGCATGAAGATAGAATCTAGAAA
GTCGTCTAGCTGGAGCATGAACCTTGTTTGTAGAACTTCCATGCTCAGCA
ACAATGGAATAAAGACTAGCCTCAACAACAGCAGCTTCCCTTAGTTCTTC
TTCGAGCATTTCAATTTTGGATTCCAACTCAACTTTGCTGTTGGAAAAGC
TTTTTGTATTTTCTTTGCTTTTATTACATGTGTCACTTGTAGAACCACAA
TGAATCTTTTCAGGAATATCATTTTCCTTTGCCTTCTTTGCAAACTCAGT
TTTCTTTAGCAGCCCATAACTGTTACCTGAGTCAACTTTGCGGTTAGAAA
AGCTGTTTGCAGTTTCTTCCCTTGCACCAAGTATATCACTTGTGGTACCA
TTAGAAGTCTTCTCAGGGATATAATTTTCCTTCGCCTTCTCCATAAACTG
GATCTTTGATAGTCCGTTACTCGTACCTTTGTCAACATGCAACTGAACAG
GTATCACACGCTTTTGCCTATCATTTGCAAGGAAGCCACCTTTCACTTCA
GTTGCTGTCGAGCTGGATGCAAAAGTGTTACTCCTCAATGCAACTTGCTT
TCTCGTAGAATCTTGAGGTGGTCTAAAACCTAACCTGTCCTGAAGAGAAT
ATTCCTCGGGGCCCAAAATCTGGTTATCCAGCTCATCTTCCCATGGTGAC
TTTTCAGCATTTCCCTTCCAATGGCCAACACGTGAATTGCTACTTAAATG
TCTGTTTACATGGCTTTGGTCATGCCTCCATGCTTTTCTAGCTCCCTCTC
TTTTGCTATGGGAGTCTTTATCTTTTACATGATTCAAGTTCACATCTACT
GGAACAGCAACACATGCCTCTGAGGAAGAAACTTTACCCATTGGATGACT
TACAGGATTCTCGGGATTGGAGGACAAGTACATTGAAGATAAATGAGATG
TATTCCCATTTACTTGCTTGAATGCTTCAACCGCCGGACTTACCCCTGAG
TTTGCAGATGTTCCATCAGAAGGAAGACTGAGCCCAAGTCTTCCTATACC
ACCATTTGCTAATTCCAATCCAATCTTCTCATGTTGGCTATGTGACTCCC
TAGAAGAATCAAAAACAGATGAAGAAACAGTCCGAGATGAATGTGAGGAA
AGACCATCATCACCATCATCAGTAAAAGAGGCAATCTCAGTTTCCTCATC
ATTCCCTTCATTTATTGATCCAGAAACAGATTCACTCCCATCCTTTTCAA
GTGATACTTCTTTTGGCAAGCTGCCTTTCGATGATGAGCTGGAGCTACCT
TTATCAAATGGCTGGATAGTAAGATAAAGAACAGGCTGTTCTATGTTCCT
TGAACTCTTCTTCAAGTTAATAGGAGTGCTAATGCTTATAGTTTCCCTGA
TAATCCCATAATCTGCAAGGTTTACAACAGCAGATCCTAAAAGTTGACCC
TTTGCCACCTTGTCCTTTCGAGGCTCATACAAGTAGAACTCTAAACAATT
CTTCTGGAAACCATCACGGTTGGTGCTCTTACGGGACGATTCCAGAGATA
AAGTTACTTGAAGCCTGAAAGACTCGCCAAACTCGATTTTCCCATTCCTA
AAACTAGAAACCGAGGACCCAGAATTCTTATCACCATTTTCCCATTGAAG
CAATAAAGATTGAGCCGCTGGCAAAGACTGCAATGGTGTCCAAGGATTAA
TTTCCTTTACATATACAATGTAATAAACCTGATATGAGTTGCCTTTTCTG
TTCTTAGTTCTTAGGCCAAGAACCATTGTTTGGTCTCTGAAGAAATTATG
GCCTTCACTCTTAATCAATATGATCAATCAAAATGACTTCATGTTTTTGA
AAACCACACATTAAAGATAGGGAACATCCGATGAAGAGAAGAATCATATA
AAAAGGGAAACAAAACGAGAGTAGAAATGTAGGTAGAAGAAAAAGGAAAG
TGTGGCAGTGGAGGCAGCTAAGGAAACAGTAGCAAAGAAGAAAGGAATAA
GACAAAAAAGTGGGAGAAGGTTTACTGTTTAGAGTTGAAAAAGGGTGAAT
TGTTGTGAACTAATGTGCCTTTTTTTAAACAAACAGCGGTGAAAGCAGAA
AAGGCTACGACAAATCGCAATTGTGGGAGGAGAAAGAGGAAACCTTTTTT
TTCTTTTGTTATGGATTTGGTATTTTTGTT
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