g.barbadense_cottongen_reftransV1_0094251, g.barbadense_cottongen_reftransV1_0094251 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC6_ARATH (Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1) HSP 1 Score: 391.349 bits (1004), Expect = 6.640e-129 Identity = 230/354 (64.97%), Postives = 277/354 (78.25%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLM-HQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASG---NISSCPPGFHISRGVKHMQHPQQNVHH----LPHISEVPYNSREMHASDVLPVTP---GTSEAAKSRQGKRA--KEAKVIASNXXXXXXXXXXKQENEDS-DKLMSGKS-HEWKGGQDVGGAGDDLNKQ-LVTTKSDWKGKDL-GLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEG-YDLSNPVDLKHHWAKHGTNRYITIK 1573 MDDGGHRENGR KA QGQWLM HQPSMKQ+M+I+AERDAAIQERNLA+SEKKAA+AERDMAFLQRD AIAERNNAI ERD+A+ LQYRENS+ + N+S+CPPG ISRGVKH+ HP + HH +P ++E Y +REM +D LP +P T E+AK ++GKR K A+NK+ K +KVK+E+ED +K+M K+ H++ +D +K L+ +KSDWK +++ GLNQVV+D++TM PPVCSCTGVLRQCYKWGNGGWQSSCCTT+LSMYPLPA+PNKRHAR+GGRKMSGSAFNKLL+RLAAEG +DLSNPVDLK HWAKHGTNRYITIK Sbjct: 1 MDDGGHRENGRHKA----AVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVKHLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVNPKATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTHDY--------TDEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BBRD_ORYSJ (Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 3.073e-93 Identity = 180/349 (51.58%), Postives = 228/349 (65.33%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLMHQPSMK-------QIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLP---HISEVPYN-SREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVG--GAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573 MD+ GHRENGR + DQY+ QW+M Q ++A+M +RD AI+ER+ AL+EKKAAIAERDMAF QRDAA+AERN A+ ERDNA+A L+ + + N + P +S G K++ H Q H +++ PY+ +REMH S+ P++ A K+ KR K+ AS K + ++ S +WK +VG G GDD + K++WK ++LGLNQV FDDSTM P CSCTG LRQCYKWGNGGWQSSCCT ++SMYPLP +PNKRHAR+GGRKMSG AF KLL+RLAAEG+DLS PVDLK HWAKHGTNRYITI+ Sbjct: 1 MDNLGHRENGRQRPDQYKGLHTQWMMPQTQRHLKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDNALAALELARTNGLNMNNGNGFPQGSLS-GSKNIHHHDQLSHAQSSPLQLADSPYDHAREMHISEAYPISTAPGSAGKA---KRPKKNSSQASPLKRPSGVLRKTKK----------PSGDWK---NVGMSGCGDD-SAHASVMKNEWKDQNLGLNQVAFDDSTMPAPACSCTGKLRQCYKWGNGGWQSSCCTMNISMYPLPVMPNKRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 331
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC4_ARATH (Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 1.248e-78 Identity = 157/352 (44.60%), Postives = 206/352 (58.52%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLM---HQPSM--------KQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQ-GKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVT----TKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573 M++GG +N R K D ++ AQ W M HQ K+IM+I+AERDAA+ ERN A+S KK A+A RD A QRD A++ER+ A+ ERDNA A LQ+ ENSL F +S G K + + + E H +V P++ E ++ KR KE K +G V G+DLN+++ +++DW +D+GLN V FD++TM P+CSCTG RQCYKWGNGGWQSSCCTT+LS YPLP +PNKRH+R+GGRKMSG+ F++LL+RL+AEGYDLS PVDLK +WA+HGTNRYITIK Sbjct: 1 MENGGQYDNARFKPDYFKGAQSMWNMIPQHQIKEQHNALVMNKKIMSILAERDAAVHERNQAVSAKKEAVAARDEALQQRDKALSERDKALIERDNAYAALQHHENSL----------NFALSGG-KCVD------------GDDCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKRKKENK---------------------------------QGLSKVKKVGEDLNRRVPAPGKKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHGTNRYITIK 296
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC5_ARATH (Protein BASIC PENTACYSTEINE5 OS=Arabidopsis thaliana GN=BPC5 PE=1 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 1.674e-73 Identity = 151/347 (43.52%), Postives = 203/347 (58.50%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLMHQPSM-------KQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVT----TKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573 M+ GG ENGR K D Y+ Q +M + K+I++I+AERDAA++ERN A++ K A+A RD A QRD A++ER+NAI E ++A+ L+YREN+L I SC RG +++ HLP+ S P++ EAA +R KR KE+K GK G+DLN+ + + ++ DW D+ V FD+ TM P+C+CTG RQCYKWGNGGWQSSCCTT+LS YPLP +PNKRH+R+GGRKMSGS F++LL+RLA EG++LS+PVDLK++WA+HGTNRYITIK Sbjct: 1 MESGGQYENGRYKPDYYKGTQSVNVMPKKEQHNALVMNKKIISILAERDAAVKERNEAVAATKEALASRDEALEQRDKALSERDNAIMETESALNALRYRENNL--NYILSC-----AKRGGSQRFITEES--HLPNPS---------------PISTIPPEAANTRPTKRKKESK--------------------------QGKK-----------MGEDLNRPVASPGKKSRKDWDSNDV---LVTFDEMTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGRKMSGSVFSRLLSRLAGEGHELSSPVDLKNYWARHGTNRYITIK 283
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC7_ARATH (Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thaliana GN=BPC7 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.605e-43 Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = -3 Query: 566 TKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 910 TK + K D+ ++ FD S + PPVCSCTGV R CYKWG GGWQSSCCT S+S YPLP + AR+ GRKMS A+ KLL RLA EGYDLS+P+DLK+HWA+HGTN+++TIK Sbjct: 112 TKREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLADEGYDLSHPLDLKNHWARHGTNKFVTIK 226
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC3_ARATH (Protein BASIC PENTACYSTEINE3 OS=Arabidopsis thaliana GN=BPC3 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 3.211e-39 Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = -3 Query: 566 KGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 895 K ++ +N V D + PVCSCTG+ +QCY+WG GGWQS+CCTT++SMYPLP +R ARI GRKMS AF K+L +L+++G+D SNP+DLK HWAKHGTN+++TI+ Sbjct: 160 KCIEMVINGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPLPVNTKRRGARIAGRKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVTIR 269
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BBR_HORVU (Protein Barley B recombinant OS=Hordeum vulgare GN=BBR PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.137e-39 Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = -3 Query: 566 TKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 910 ++ K ++ +N + FD S + PVCSCTG +QCY+WG GGWQS+CCTTS+S YPLP +R ARI GRKMS AF K+L +LA EGY+L+NP+DLK WAKHGTN+++TI+ Sbjct: 236 SRGPLKPVEMVINGIDFDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 350
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC2_ARATH (Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 2.271e-38 Identity = 61/110 (55.45%), Postives = 84/110 (76.36%), Query Frame = -3 Query: 566 KGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 895 K DL +N V D S + P+C+CTG +QCY+WG GGWQS+CCTT++SM+PLP +R ARI GRKMS AF K+L +LA++G++ NP+DLK HWA+HGTN+++TI+ Sbjct: 170 KSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 279
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BPC1_ARATH (Protein BASIC PENTACYSTEINE1 OS=Arabidopsis thaliana GN=BPC1 PE=1 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 5.252e-38 Identity = 62/110 (56.36%), Postives = 81/110 (73.64%), Query Frame = -3 Query: 566 KGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 895 K DL +N V D S + PVC+CTG +QCY+WG GGWQS+CCTT++S+YPLP +R ARI GRKMS AF K+L +L+ EGY N +DLK HWA+HGTN+++TI+ Sbjct: 174 KSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKSHWARHGTNKFVTIR 283
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Match: BBRB_ORYSJ (Barley B recombinant-like protein B OS=Oryza sativa subsp. japonica GN=Os10g0115200 PE=2 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.548e-37 Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -3 Query: 566 KDLGL--NQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 889 K++G+ N + D S + P+CSCTG +QCY+WG GGWQS+CCTT++S YPLP +R ARI GRKMS AF K+L +LA EGY+L+NP+DLK WAKHGTN+++TI+ Sbjct: 232 KNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: A0A059CE00_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01054 PE=4 SV=1) HSP 1 Score: 476.863 bits (1226), Expect = 1.989e-160 Identity = 250/337 (74.18%), Postives = 276/337 (81.90%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLM-HQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573 MDDGGHRENGR KAD Y+ AQ QWLM HQPSMKQIM IMAERDAA+QERNLALSEKKAAIAERD+AF QRD AIAERNNA ERDNAIA LQYRENSL SGNISSCPPG ISRGVKHM HPQQ VHH+ +SE Y +R+MH SD LP++P SEA +SRQ KR KEAK ++++KKA K PKKVK+E +D +KL++G D NK KSDWKG+DLGLNQV FDDSTM PVCSCTG+ RQCYKWGNGGWQSSCCTT++SMYPLPAVPNKRHAR+GGRKMSGSAF KLL+RLAAEGYDLS+PVDLK HWAKHGTNRYITIK Sbjct: 1 MDDGGHRENGRHKADHYKNAQSQWLMQHQPSMKQIMGIMAERDAALQERNLALSEKKAAIAERDIAFHQRDMAIAERNNAYLERDNAIATLQYRENSLTSGNISSCPPGCQISRGVKHMHHPQQQVHHVSSMSEAAYGTRDMHPSDALPISPVASEATRSRQTKRTKEAKAMSTSKKAPKTPKKVKRETDDLNKLLNGD--------------DGYNKPFGVPKSDWKGQDLGLNQVAFDDSTMPSPVCSCTGIARQCYKWGNGGWQSSCCTTTISMYPLPAVPNKRHARVGGRKMSGSAFGKLLSRLAAEGYDLSSPVDLKDHWAKHGTNRYITIK 323
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: B9GQZ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s02820g PE=4 SV=2) HSP 1 Score: 469.929 bits (1208), Expect = 1.230e-157 Identity = 262/338 (77.51%), Postives = 291/338 (86.09%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLMH-QPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPH-ISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573 MDDGGHRENGR KADQY+TAQGQWLM QPSMKQIMAIMAERDAAI ERN+ALSEKKAAIAERDMAFLQRD+AIAERNNA+ ERDNAIA LQYRENSL SGN+++CPPGFH SRGVKHM H QQ H ++E PY +REM SD LPV+P SE AK ++GKR K+AK SNKK +K P+KVK+E++D+D M GKSHEWK GQD+ G GDD NKQL +KSDWKG+DLGLNQV FD++TM PVCSCTGV RQCYKWGNGGWQSSCCTT+LSMYPLPAVPNKRHAR+GGRKMSGSAF+KLL+RLAAEG DLSNPVDLK HWAKHGTNRYITIK Sbjct: 1 MDDGGHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAIAERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSLPSGNMTTCPPGFHNSRGVKHMHHQQQQHTHHLPHMNEGPYGTREMQTSDALPVSPVASEVAKPQRGKRPKDAKATPSNKKTSKSPRKVKRESDDTD--MFGKSHEWKNGQDMDGGGDDPNKQLAASKSDWKGQDLGLNQVAFDETTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: B9H4J8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s25720g PE=4 SV=1) HSP 1 Score: 469.159 bits (1206), Expect = 2.734e-157 Identity = 254/337 (75.37%), Postives = 286/337 (84.87%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLMH-QPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573 MDDG HRENGR KADQY+TAQGQWLM QPSMKQIMAIMAERDAAI ERN+ALSEKKAA+AERDMAFLQRD+AIAERNNA+ ERDNAIA LQYRENS AS N SS PPG+H SRGVKHM H QQ++H H++E Y +REM SD +P++P SEAAK R+GKR K+ + SNKK +K P KVK+E+ED + M GKS+EWK G+D+ G GD LNKQL +KSDWKG+DLGLNQV FD++TM PVCSCTG RQCYKWGNGGWQSSCCTT+LSMYPLPAVPNKRHAR+GGRKMSGSAF+KLL+RLAAEG DLSNPVDLK HWAKHGTNRYITIK Sbjct: 1 MDDGVHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAVAERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSFASANTSSSPPGYHNSRGVKHMHHQQQHIHLP-HMNEGAYGTREMQTSDAVPISPVASEAAKPRRGKRPKDTQSTPSNKKTSKSPMKVKRESEDLNN-MFGKSNEWKNGEDMNGGGDGLNKQLAASKSDWKGQDLGLNQVAFDETTMPAPVCSCTGFFRQCYKWGNGGWQSSCCTTALSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 335
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: H1ZN45_POPTR (GAGA-binding transcriptional activator OS=Populus trichocarpa GN=BBR/BPC6 PE=2 SV=1) HSP 1 Score: 468.389 bits (1204), Expect = 5.364e-157 Identity = 261/338 (77.22%), Postives = 290/338 (85.80%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLMH-QPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPH-ISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573 MDDGGHRENGR KADQY+TAQGQWLM QPSMKQIMAIMAERDAAI ERN+ALSEKKAAI ERDMAFLQRD+AIAERNNA+ ERDNAIA LQYRENSL SGN+++CPPGFH SRGVKHM H QQ H ++E PY +REM SD LPV+P SE AK ++GKR K+AK SNKK +K P+KVK+E++D+D M GKSHEWK GQD+ G GDD NKQL +KSDWKG+DLGLNQV FD++TM PVCSCTGV RQCYKWGNGGWQSSCCTT+LSMYPLPAVPNKRHAR+GGRKMSGSAF+KLL+RLAAEG DLSNPVDLK HWAKHGTNRYITIK Sbjct: 1 MDDGGHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAITERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSLPSGNMTTCPPGFHNSRGVKHMHHQQQQHTHHLPHMNEGPYGTREMQTSDALPVSPVASEVAKPQRGKRPKDAKATPSNKKTSKSPRKVKRESDDTD--MFGKSHEWKNGQDMDGGGDDPNKQLAASKSDWKGQDLGLNQVAFDETTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Match: A0A068UIH3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_26 OS=Coffea canephora GN=GSCOC_T00024693001 PE=4 SV=1) HSP 1 Score: 464.922 bits (1195), Expect = 1.148e-155 Identity = 257/337 (76.26%), Postives = 285/337 (84.57%), Query Frame = -3 Query: 566 MDDGGHRENGRLKADQYRTAQGQWLM-HQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDXXXXXXXXXXXXRDNAIANLQYRENSLASGNISSCPPGFHISRGVKHMQHPQQNVHHLPHISEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKEAKVIASNXXXXXXXXXXKQENEDSDKLMSGKSHEWKGGQDVGGAGDDLNKQLVTTKSDWKGKDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTSLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLTRLAAEGYDLSNPVDLKHHWAKHGTNRYITIK 1573 MDD GHRENGR ++ QGQWLM HQPSMKQIMAIMAERDAAIQERNLALSEKKAA+AERDMA LQRD+AIAERNNAI ERDNAIA LQYRENS+ SGN+S CPPG I+RGVKHM HPQQ+VHH P ++E PY SR+M SD +P++PG E AKSR+ KR K+ K + S KKA+K KKVK+E ED +K M GKSHEWK GQ+VG DDLN+QL +K DWK +DLGLNQV FD+STM PVCSCTGVLR CYKWGNGGWQSSCCTT+LSMYPLPAVPNKRHARIGGRKMSGSAFNKLL+RLAAEG+DLSNPVDLK HWAKHGTNRYITIK Sbjct: 1 MDDSGHRENGR-----HKPPQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRENSINSGNMSPCPPGCQITRGVKHMHHPQQHVHHQPQVNEPPYGSRDMPISDAIPISPGVLEPAKSRRTKRTKDPKAVTSTKKASKSSKKVKREGEDLNKTMFGKSHEWKPGQEVGSGTDDLNRQLGVSKPDWKDQDLGLNQVAFDESTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKEHWAKHGTNRYITIK 332 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 12
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BLAST of g.barbadense_cottongen_reftransV1_0094251 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094251 ID=g.barbadense_cottongen_reftransV1_0094251; Name=g.barbadense_cottongen_reftransV1_0094251; organism=Gossypium barbadense; type=contig; length=2004bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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